Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21100 and DDA3937_RS21105 are separated by 29 nucleotides DDA3937_RS21105 and DDA3937_RS21110 are separated by 1 nucleotides DDA3937_RS21110 and DDA3937_RS21115 overlap by 4 nucleotides
DDA3937_RS21100: DDA3937_RS21100 - TIGR04028 family ABC transporter substrate-binding protein, at 4,802,481 to 4,804,124
_RS21100
DDA3937_RS21105: DDA3937_RS21105 - ABC transporter permease, at 4,804,154 to 4,805,095
_RS21105
DDA3937_RS21110: DDA3937_RS21110 - ABC transporter permease, at 4,805,097 to 4,805,957
_RS21110
DDA3937_RS21115: DDA3937_RS21115 - ABC transporter ATP-binding protein, at 4,805,954 to 4,807,636
_RS21115
Position (kb) 4805
4806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4804.101 kb on + strand at 4804.102 kb on - strand at 4804.122 kb on + strand at 4804.166 kb on + strand at 4804.166 kb on + strand at 4804.166 kb on + strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.167 kb on - strand at 4804.216 kb on + strand at 4804.216 kb on + strand at 4804.217 kb on - strand at 4804.217 kb on - strand at 4804.217 kb on - strand at 4804.444 kb on + strand, within DDA3937_RS21105 at 4804.594 kb on + strand, within DDA3937_RS21105 at 4804.594 kb on + strand, within DDA3937_RS21105 at 4804.595 kb on - strand, within DDA3937_RS21105 at 4804.595 kb on - strand, within DDA3937_RS21105 at 4804.595 kb on - strand, within DDA3937_RS21105 at 4804.595 kb on - strand, within DDA3937_RS21105 at 4804.983 kb on + strand, within DDA3937_RS21105 at 4804.983 kb on + strand, within DDA3937_RS21105 at 4805.051 kb on + strand at 4805.052 kb on - strand at 4805.096 kb on + strand at 4805.235 kb on - strand, within DDA3937_RS21110 at 4805.235 kb on - strand, within DDA3937_RS21110 at 4805.340 kb on + strand, within DDA3937_RS21110 at 4805.340 kb on + strand, within DDA3937_RS21110 at 4805.340 kb on + strand, within DDA3937_RS21110 at 4805.340 kb on + strand, within DDA3937_RS21110 at 4805.341 kb on - strand, within DDA3937_RS21110 at 4805.597 kb on + strand, within DDA3937_RS21110 at 4805.793 kb on + strand, within DDA3937_RS21110 at 4805.794 kb on - strand, within DDA3937_RS21110 at 4805.850 kb on + strand, within DDA3937_RS21110 at 4805.850 kb on + strand, within DDA3937_RS21110 at 4805.850 kb on + strand, within DDA3937_RS21110 at 4805.850 kb on + strand, within DDA3937_RS21110 at 4805.851 kb on - strand, within DDA3937_RS21110 at 4805.851 kb on - strand, within DDA3937_RS21110 at 4806.244 kb on + strand, within DDA3937_RS21115 at 4806.245 kb on - strand, within DDA3937_RS21115 at 4806.259 kb on - strand, within DDA3937_RS21115 at 4806.438 kb on - strand, within DDA3937_RS21115 at 4806.680 kb on + strand, within DDA3937_RS21115 at 4806.680 kb on + strand, within DDA3937_RS21115 at 4806.680 kb on + strand, within DDA3937_RS21115 at 4806.681 kb on - strand, within DDA3937_RS21115 at 4806.681 kb on - strand, within DDA3937_RS21115 at 4806.681 kb on - strand, within DDA3937_RS21115 at 4806.823 kb on + strand, within DDA3937_RS21115 at 4806.858 kb on + strand, within DDA3937_RS21115 at 4806.858 kb on + strand, within DDA3937_RS21115 at 4806.859 kb on - strand, within DDA3937_RS21115 at 4806.859 kb on - strand, within DDA3937_RS21115 at 4806.859 kb on - strand, within DDA3937_RS21115 at 4806.859 kb on - strand, within DDA3937_RS21115
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,804,101 + -0.8 4,804,102 - +0.3 4,804,122 + +0.2 4,804,166 + +0.3 4,804,166 + +0.8 4,804,166 + -1.2 4,804,167 - +0.3 4,804,167 - +0.4 4,804,167 - -0.1 4,804,167 - +0.3 4,804,167 - -0.7 4,804,167 - -1.2 4,804,167 - -0.4 4,804,167 - +0.5 4,804,216 + -0.4 4,804,216 + +0.8 4,804,217 - +0.4 4,804,217 - -0.4 4,804,217 - -0.8 4,804,444 + DDA3937_RS21105 0.31 +0.0 4,804,594 + DDA3937_RS21105 0.47 -1.2 4,804,594 + DDA3937_RS21105 0.47 -0.0 4,804,595 - DDA3937_RS21105 0.47 -0.4 4,804,595 - DDA3937_RS21105 0.47 -3.0 4,804,595 - DDA3937_RS21105 0.47 -0.1 4,804,595 - DDA3937_RS21105 0.47 -0.3 4,804,983 + DDA3937_RS21105 0.88 -1.8 4,804,983 + DDA3937_RS21105 0.88 -0.3 4,805,051 + +1.0 4,805,052 - -0.7 4,805,096 + +0.0 4,805,235 - DDA3937_RS21110 0.16 -1.8 4,805,235 - DDA3937_RS21110 0.16 +0.3 4,805,340 + DDA3937_RS21110 0.28 -2.7 4,805,340 + DDA3937_RS21110 0.28 +0.4 4,805,340 + DDA3937_RS21110 0.28 +0.2 4,805,340 + DDA3937_RS21110 0.28 +0.6 4,805,341 - DDA3937_RS21110 0.28 -0.4 4,805,597 + DDA3937_RS21110 0.58 +3.5 4,805,793 + DDA3937_RS21110 0.81 -0.3 4,805,794 - DDA3937_RS21110 0.81 +1.9 4,805,850 + DDA3937_RS21110 0.87 -0.5 4,805,850 + DDA3937_RS21110 0.87 -0.5 4,805,850 + DDA3937_RS21110 0.87 -0.6 4,805,850 + DDA3937_RS21110 0.87 -0.5 4,805,851 - DDA3937_RS21110 0.88 +2.6 4,805,851 - DDA3937_RS21110 0.88 -0.5 4,806,244 + DDA3937_RS21115 0.17 +0.5 4,806,245 - DDA3937_RS21115 0.17 -1.2 4,806,259 - DDA3937_RS21115 0.18 +0.0 4,806,438 - DDA3937_RS21115 0.29 +1.9 4,806,680 + DDA3937_RS21115 0.43 -0.2 4,806,680 + DDA3937_RS21115 0.43 -2.6 4,806,680 + DDA3937_RS21115 0.43 +0.6 4,806,681 - DDA3937_RS21115 0.43 -0.2 4,806,681 - DDA3937_RS21115 0.43 +0.4 4,806,681 - DDA3937_RS21115 0.43 +0.7 4,806,823 + DDA3937_RS21115 0.52 -0.9 4,806,858 + DDA3937_RS21115 0.54 -0.4 4,806,858 + DDA3937_RS21115 0.54 +2.1 4,806,859 - DDA3937_RS21115 0.54 -0.4 4,806,859 - DDA3937_RS21115 0.54 +2.0 4,806,859 - DDA3937_RS21115 0.54 +0.2 4,806,859 - DDA3937_RS21115 0.54 -1.0
Or see this region's nucleotide sequence