Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20985

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,772,733	-		DDA3937_RS20980	0.75	-0.9
4,772,922	+		DDA3937_RS20980	0.85	-2.0
4,772,945	-		DDA3937_RS20980	0.86	+0.2
4,773,027	+				+0.1
4,773,027	+				-0.1
4,773,027	+				-0.2
4,773,028	-				-1.0
4,773,028	-				-0.2
4,773,089	-				-0.1
4,773,089	-				-0.6
4,773,103	+				+0.8
4,773,145	+				-0.2
4,773,145	+				-1.1
4,773,146	-				-0.0
4,773,146	-				-0.5
4,773,184	+				-1.0
4,773,184	+				-0.3
4,773,184	+				+0.1
4,773,184	+				+0.3
4,773,185	-				-1.2
4,773,187	+				+0.3
4,773,187	+				-0.4
4,773,187	+				+0.3
4,773,187	+				-0.8
4,773,187	+				+0.3
4,773,187	+				+0.4
4,773,187	+				+0.8
4,773,187	+				-1.4
4,773,187	+				-1.0
4,773,187	+				-0.4
4,773,187	+				-0.8
4,773,187	+				-1.3
4,773,187	+				+0.3
4,773,188	-				-0.0
4,773,188	-				-0.3
4,773,188	-				+1.8
4,773,188	-				-1.3
4,773,202	+				+0.5
4,773,202	+				-0.4
4,773,203	-				-1.7
4,773,203	-				-0.7
4,773,208	+				-0.1
4,773,208	+				+0.2
4,773,208	+				+0.2
4,773,208	+				-1.1
4,773,208	+				-1.2
4,773,208	+				-1.2
4,773,208	+				-0.5
4,773,208	+				-0.1
4,773,208	+				-0.5
4,773,208	+				-0.0
4,773,208	+				-1.1
4,773,208	+				+0.3
4,773,209	-				-0.1
4,773,209	-				-0.2
4,773,209	-				+0.7
4,773,209	-				+0.8
4,773,209	-				+0.3
4,773,209	-				+0.1
4,773,209	-				-1.1
4,773,209	-				+1.0
4,773,209	-				+0.9
4,773,209	-				+1.2
4,773,209	-				-0.9
4,773,209	-				-0.5
4,773,253	+				-0.4
4,773,254	-				-1.4
4,773,254	-				-1.0
4,773,254	-				-0.1
4,773,303	+				-0.2
4,773,319	+				-0.1
4,773,374	-				-0.5
4,773,424	+				-0.1
4,773,425	-				-0.7
4,773,425	-				-0.5
4,773,425	-				+0.8
4,773,480	+				-1.4
4,773,599	-				-3.1
4,773,667	-				-0.2
4,773,697	-				+0.4
4,773,777	+		DDA3937_RS20985	0.12	-0.7
4,773,777	+		DDA3937_RS20985	0.12	-0.8
4,773,778	-		DDA3937_RS20985	0.12	-0.8
4,773,778	-		DDA3937_RS20985	0.12	+2.5
4,773,778	-		DDA3937_RS20985	0.12	-0.1
4,773,809	+		DDA3937_RS20985	0.16	-0.8
4,773,855	+		DDA3937_RS20985	0.23	-3.0
4,773,855	+		DDA3937_RS20985	0.23	-2.5
4,773,855	+		DDA3937_RS20985	0.23	-1.4
4,773,856	-		DDA3937_RS20985	0.23	-3.0
4,773,911	+		DDA3937_RS20985	0.30	-0.8
4,773,947	-		DDA3937_RS20985	0.35	-3.4
4,773,948	+		DDA3937_RS20985	0.36	-0.2
4,773,949	-		DDA3937_RS20985	0.36	+0.3
4,773,949	-		DDA3937_RS20985	0.36	-0.7
4,773,949	-		DDA3937_RS20985	0.36	-0.8
4,773,960	+		DDA3937_RS20985	0.37	+0.3
4,773,960	+		DDA3937_RS20985	0.37	-1.7
4,773,960	+		DDA3937_RS20985	0.37	-0.1
4,773,960	+		DDA3937_RS20985	0.37	+0.2
4,773,960	+		DDA3937_RS20985	0.37	-0.7
4,773,962	+		DDA3937_RS20985	0.38	-0.8
4,774,043	+		DDA3937_RS20985	0.49	-0.5
4,774,044	-		DDA3937_RS20985	0.49	-1.2
4,774,044	-		DDA3937_RS20985	0.49	-1.0
4,774,048	+		DDA3937_RS20985	0.50	-2.2
4,774,048	+		DDA3937_RS20985	0.50	-0.7
4,774,049	-		DDA3937_RS20985	0.50	-0.9
4,774,049	-		DDA3937_RS20985	0.50	-0.3
4,774,049	-		DDA3937_RS20985	0.50	-3.0
4,774,049	-		DDA3937_RS20985	0.50	-0.7
4,774,090	+		DDA3937_RS20985	0.56	-0.2
4,774,090	+		DDA3937_RS20985	0.56	-1.0
4,774,090	+		DDA3937_RS20985	0.56	-0.4
4,774,091	-		DDA3937_RS20985	0.56	-1.0
4,774,091	-		DDA3937_RS20985	0.56	-1.7
4,774,095	+		DDA3937_RS20985	0.56	+0.0
4,774,096	-		DDA3937_RS20985	0.56	-0.7
4,774,096	-		DDA3937_RS20985	0.56	-2.1
4,774,096	-		DDA3937_RS20985	0.56	+0.2
4,774,178	-		DDA3937_RS20985	0.68	+1.0
4,774,197	+		DDA3937_RS20985	0.71	-1.0
4,774,197	+		DDA3937_RS20985	0.71	-1.0
4,774,197	+		DDA3937_RS20985	0.71	-2.2
4,774,197	+		DDA3937_RS20985	0.71	-1.5
4,774,198	-		DDA3937_RS20985	0.71	-0.3
4,774,208	-		DDA3937_RS20985	0.72	+1.3
4,774,292	-		DDA3937_RS20985	0.84	-0.3
4,774,360	+				-2.1
4,774,361	-				+0.4
4,774,361	-				+0.0
4,774,361	-				-1.1
4,774,361	-				+1.9
4,774,361	-				-1.7
4,774,361	-				-1.1
4,774,361	-				-0.6
4,774,361	-				+0.2
4,774,361	-				+0.2
4,774,406	+				-0.5
4,774,406	+				+0.3
4,774,406	+				-0.7
4,774,406	+				-0.5
4,774,406	+				+0.2
4,774,406	+				-0.1
4,774,406	+				+0.1
4,774,407	-				-0.5
4,774,407	-				-0.2
4,774,407	-				+0.7
4,774,407	-				+0.4
4,774,409	+				-0.2
4,774,409	+				-0.7
4,774,409	+				+0.8
4,774,409	+				-0.4
4,774,410	-				-0.7
4,774,410	-				-1.0
4,774,410	-				-0.2
4,774,410	-				-1.0
4,774,410	-				-0.5
4,774,410	-				-2.0
4,774,419	+				-0.2
4,774,448	-				+0.1
4,774,448	-				+1.3
4,774,453	+				-0.1
4,774,453	+				-0.1
4,774,453	+				-0.3
4,774,453	+				+2.3
4,774,454	-				-0.0
4,774,454	-				+0.3
4,774,454	-				-0.7
4,774,454	-				-0.5
4,774,454	-				-0.1
4,774,454	-				-0.5
4,774,454	-				-0.7
4,774,457	+				+1.7
4,774,458	-				+0.9
4,774,458	-				+0.1
4,774,458	-				-0.5
4,774,458	-				-0.7
4,774,472	-				-0.2
4,774,485	+				+0.7
4,774,485	+				+0.7
4,774,485	+				-0.2
4,774,486	-				-0.2
4,774,486	-				-1.9
4,774,486	-				+0.1
4,774,486	-				-0.1
4,774,499	+				-0.0
4,774,499	+				-1.6
4,774,500	-				-0.0
4,774,500	-				+0.3
4,774,540	+				-1.2
4,774,629	+				-0.5
4,774,630	-				-0.5
4,774,630	-				-0.4
4,774,675	-				-1.2
4,774,689	-				-0.8
4,774,689	-				-0.1
4,774,692	-				+0.1
4,774,723	+				+0.1
4,774,723	+				-0.4
4,774,723	+				-1.6
4,774,724	-				-0.4
4,774,745	+				-0.1
4,774,746	-				+0.2
4,774,761	+				-0.8
4,774,761	+				-0.6
4,774,761	+				+1.7
4,774,761	+				+1.0
4,774,761	+				+0.9
4,774,762	-				+0.7
4,774,762	-				+0.3
4,774,762	-				-1.2
4,774,762	-				-0.6
4,774,762	-				+0.3
4,774,762	-				+0.2
4,774,762	-				-1.7
4,774,764	+				-0.2
4,774,764	+				+0.9
4,774,764	+				-0.6
4,774,764	+				-2.0
4,774,765	-				-0.1
4,774,765	-				+0.2
4,774,765	-				-1.2
4,774,765	-				-2.0
4,774,765	-				+0.5
4,774,765	-				-0.8
4,774,765	-				-0.1
4,774,765	-				-1.1
4,774,780	-				-0.7
4,775,069	-				-0.5
4,775,096	+				-0.2
4,775,096	+				-0.5
4,775,186	+				+0.3
4,775,187	-				-0.2
4,775,269	+				+0.3
4,775,293	+		DDA3937_RS20990	0.12	+0.0
4,775,336	-		DDA3937_RS20990	0.16	+0.9
4,775,336	-		DDA3937_RS20990	0.16	+1.8
4,775,371	+		DDA3937_RS20990	0.19	-0.9
4,775,372	-		DDA3937_RS20990	0.19	-0.5
4,775,372	-		DDA3937_RS20990	0.19	+2.2