Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20910

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,751,460	+		DDA3937_RS20900	0.61	+0.8
4,751,460	+		DDA3937_RS20900	0.61	+2.3
4,751,460	+		DDA3937_RS20900	0.61	-0.6
4,751,460	+		DDA3937_RS20900	0.61	-1.5
4,751,461	-		DDA3937_RS20900	0.61	-2.0
4,751,499	+		DDA3937_RS20900	0.65	-0.4
4,751,517	+				-0.7
4,751,518	-		DDA3937_RS20900	0.67	-0.2
4,751,597	+		DDA3937_RS20900	0.75	-1.5
4,751,598	-		DDA3937_RS20900	0.75	-0.1
4,751,598	-		DDA3937_RS20900	0.75	+0.2
4,751,626	+		DDA3937_RS20900	0.78	-1.8
4,751,635	-		DDA3937_RS20900	0.79	+0.3
4,751,647	-		DDA3937_RS20900	0.81	-0.8
4,751,700	+		DDA3937_RS20900	0.86	+0.0
4,751,775	+				-0.6
4,751,775	+				-0.2
4,751,776	-				-1.0
4,751,812	+				+1.3
4,751,829	+				+0.7
4,751,829	+				-0.2
4,751,829	+				+0.8
4,751,829	+				+0.1
4,751,829	+				+0.5
4,751,829	+				+0.5
4,751,829	+				+0.1
4,751,830	-				+0.3
4,751,830	-				-0.4
4,751,830	-				-0.5
4,751,830	-				+7.3
4,751,833	+				-0.3
4,751,833	+				-2.0
4,751,833	+				+0.5
4,751,890	+				-0.3
4,751,936	+				-1.7
4,751,937	-				-2.8
4,751,937	-				-1.2
4,751,937	-				+0.0
4,751,937	-				-2.2
4,751,942	+				+0.3
4,752,195	+				-0.1
4,752,195	+				-0.3
4,752,195	+				-0.2
4,752,197	+				-0.2
4,752,198	-				+1.3
4,752,198	-				-0.2
4,752,198	-				-0.2
4,752,198	-				+0.6
4,752,204	+				-0.2
4,752,204	+				-0.1
4,752,204	+				-0.9
4,752,204	+				-0.5
4,752,204	+				-0.8
4,752,204	+				-1.3
4,752,205	-				-0.8
4,752,205	-				+0.5
4,752,205	-				-0.7
4,752,205	-				-1.8
4,752,205	-				-0.2
4,752,211	+				+0.0
4,752,212	-				-1.4
4,752,212	-				+0.7
4,752,212	-				+0.2
4,752,218	+				+0.7
4,752,218	+				-0.9
4,752,219	-				+0.3
4,752,219	-				-2.7
4,752,294	+				+1.2
4,752,294	+				+0.3
4,752,294	+				+0.9
4,752,294	+				-0.8
4,752,294	+				+0.2
4,752,295	-				-2.1
4,752,295	-				+1.3
4,752,295	-				+0.3
4,752,295	-				+2.2
4,752,295	-				+2.2
4,752,295	-				-0.6
4,752,296	+				-1.2
4,752,296	+				+0.2
4,752,296	+				-0.8
4,752,297	-				-0.1
4,752,297	-				+0.2
4,752,297	-				-0.7
4,752,297	-				-1.4
4,752,337	-				-0.1
4,752,439	+				-0.2
4,752,439	+				+0.5
4,752,439	+				-0.8
4,752,439	+				-1.1
4,752,439	+				+1.1
4,752,439	+				+2.1
4,752,439	+				+1.0
4,752,440	-				-0.3
4,752,440	-				-0.7
4,752,440	-				+0.9
4,752,440	-				+0.6
4,752,499	+				-1.0
4,752,499	+				-0.7
4,752,500	-				+2.3
4,752,500	-				-0.1
4,752,500	-				-0.6
4,752,578	+		DDA3937_RS20910	0.23	+0.1
4,752,578	+		DDA3937_RS20910	0.23	-1.0
4,752,578	+		DDA3937_RS20910	0.23	+0.3
4,752,579	-		DDA3937_RS20910	0.24	+0.2
4,752,579	-		DDA3937_RS20910	0.24	+5.6
4,752,623	-		DDA3937_RS20910	0.31	+0.5
4,752,623	-		DDA3937_RS20910	0.31	-0.4
4,752,623	-		DDA3937_RS20910	0.31	+1.4
4,752,623	-		DDA3937_RS20910	0.31	-0.1
4,752,623	-		DDA3937_RS20910	0.31	-0.7
4,752,623	-		DDA3937_RS20910	0.31	-1.1
4,752,709	+				-0.2
4,752,709	+		DDA3937_RS20910	0.46	+1.0
4,752,709	+		DDA3937_RS20910	0.46	-0.4
4,752,806	+		DDA3937_RS20910	0.63	-0.2
4,752,851	+		DDA3937_RS20910	0.71	-0.2
4,752,851	+		DDA3937_RS20910	0.71	-0.7
4,752,851	+		DDA3937_RS20910	0.71	+0.3
4,752,851	+		DDA3937_RS20910	0.71	+0.5
4,752,851	+		DDA3937_RS20910	0.71	-0.1
4,752,851	+		DDA3937_RS20910	0.71	-1.0
4,752,851	+		DDA3937_RS20910	0.71	-0.2
4,752,851	+		DDA3937_RS20910	0.71	+1.1
4,752,851	+		DDA3937_RS20910	0.71	-0.4
4,752,851	+		DDA3937_RS20910	0.71	+1.3
4,752,851	+		DDA3937_RS20910	0.71	-0.6
4,752,851	+		DDA3937_RS20910	0.71	+0.3
4,752,851	+		DDA3937_RS20910	0.71	-0.1
4,752,851	+		DDA3937_RS20910	0.71	+0.7
4,752,851	+		DDA3937_RS20910	0.71	-1.0
4,752,852	-		DDA3937_RS20910	0.71	+0.3
4,752,852	-		DDA3937_RS20910	0.71	-0.3
4,752,852	-		DDA3937_RS20910	0.71	-1.7
4,752,985	+				-0.1
4,752,985	+				+0.5
4,752,985	+				+0.6
4,752,985	+				+0.8
4,752,985	+				+0.3
4,752,986	-				-0.4
4,752,986	-				+0.3
4,752,986	-				-0.4
4,752,986	-				+0.2
4,752,986	-				-0.3
4,752,986	-				+0.4
4,752,986	-				+0.3
4,752,989	+				+0.1
4,752,989	+				-0.5
4,752,989	+				+0.3
4,752,989	+				+0.3
4,752,989	+				-2.7
4,752,990	-				+0.6
4,752,990	-				-0.4
4,752,990	-				-0.3
4,752,990	-				+1.0
4,752,990	-				-1.1
4,752,990	-				+0.6
4,752,990	-				+0.5
4,752,990	-				-0.3
4,752,990	-				-0.1
4,752,990	-				-0.6
4,752,990	-				+0.8
4,752,993	-				+0.9
4,752,993	-				+0.5
4,753,094	-				+1.1
4,753,134	-				-0.9
4,753,187	+				+0.2
4,753,188	-				+2.7
4,753,217	+				-2.4
4,753,217	+				+0.2
4,753,250	+				+0.7
4,753,250	+				-0.5
4,753,278	-				-1.2
4,753,302	+		DDA3937_RS20915	0.11	-0.4
4,753,303	-		DDA3937_RS20915	0.11	-0.6
4,753,303	-		DDA3937_RS20915	0.11	-0.1
4,753,332	+		DDA3937_RS20915	0.13	-1.5
4,753,332	+		DDA3937_RS20915	0.13	-2.1
4,753,479	+		DDA3937_RS20915	0.25	+0.8
4,753,479	+		DDA3937_RS20915	0.25	-1.2
4,753,480	-		DDA3937_RS20915	0.25	-0.1
4,753,480	-		DDA3937_RS20915	0.25	+0.3
4,753,607	+		DDA3937_RS20915	0.36	-0.5
4,753,608	-		DDA3937_RS20915	0.36	-0.7
4,753,684	+		DDA3937_RS20915	0.42	-1.0
4,753,703	+		DDA3937_RS20915	0.44	-1.6
4,753,704	-		DDA3937_RS20915	0.44	+0.0
4,753,741	+		DDA3937_RS20915	0.47	-0.7
4,753,741	+		DDA3937_RS20915	0.47	+0.3
4,753,741	+		DDA3937_RS20915	0.47	-0.0
4,753,741	+		DDA3937_RS20915	0.47	+0.1
4,753,742	-		DDA3937_RS20915	0.47	-0.3
4,753,742	-		DDA3937_RS20915	0.47	-0.3
4,753,874	+		DDA3937_RS20915	0.58	-1.0
4,753,874	+		DDA3937_RS20915	0.58	-1.2
4,753,875	-		DDA3937_RS20915	0.58	-0.7
4,753,875	-		DDA3937_RS20915	0.58	-1.3
4,753,910	+		DDA3937_RS20915	0.61	-0.4
4,753,910	+		DDA3937_RS20915	0.61	-0.8
4,753,911	-		DDA3937_RS20915	0.61	+0.0
4,753,911	-		DDA3937_RS20915	0.61	-1.2
4,753,911	-		DDA3937_RS20915	0.61	+2.2
4,753,911	-		DDA3937_RS20915	0.61	-0.6
4,753,925	+		DDA3937_RS20915	0.62	-1.0
4,753,926	-		DDA3937_RS20915	0.62	+0.5