Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20495

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,666,285	-				-2.1
4,666,821	+				+0.7
4,666,821	+				+3.2
4,666,821	+				+1.0
4,666,821	+				-0.0
4,666,821	+				-1.6
4,666,821	+				+1.3
4,666,822	-				+0.0
4,666,822	-				-2.8
4,666,822	-				-0.6
4,666,822	-				-1.0
4,666,850	+				+0.2
4,666,850	+				-0.4
4,666,850	+				-0.2
4,666,851	-				+1.3
4,666,851	-				+0.5
4,666,884	-				+1.5
4,666,896	+				-0.7
4,666,896	+				+0.4
4,667,041	+		DDA3937_RS20495	0.20	+1.1
4,667,108	+		DDA3937_RS20495	0.27	+0.0
4,667,108	+		DDA3937_RS20495	0.27	+1.4
4,667,108	+		DDA3937_RS20495	0.27	+0.2
4,667,109	-		DDA3937_RS20495	0.27	+0.4
4,667,109	-		DDA3937_RS20495	0.27	+0.6
4,667,109	-		DDA3937_RS20495	0.27	+3.2
4,667,109	-		DDA3937_RS20495	0.27	-0.8
4,667,109	-		DDA3937_RS20495	0.27	-0.7
4,667,109	-		DDA3937_RS20495	0.27	+0.5
4,667,109	-		DDA3937_RS20495	0.27	+0.2
4,667,109	-		DDA3937_RS20495	0.27	-0.1
4,667,114	+		DDA3937_RS20495	0.28	+0.5
4,667,114	+		DDA3937_RS20495	0.28	+0.0
4,667,114	+		DDA3937_RS20495	0.28	+0.3
4,667,114	+		DDA3937_RS20495	0.28	+0.2
4,667,114	+		DDA3937_RS20495	0.28	-0.1
4,667,114	+		DDA3937_RS20495	0.28	-0.2
4,667,114	+		DDA3937_RS20495	0.28	+0.9
4,667,114	+		DDA3937_RS20495	0.28	+0.2
4,667,114	+		DDA3937_RS20495	0.28	+1.2
4,667,114	+		DDA3937_RS20495	0.28	+2.6
4,667,114	+		DDA3937_RS20495	0.28	+0.6
4,667,114	+		DDA3937_RS20495	0.28	-0.4
4,667,114	+		DDA3937_RS20495	0.28	+0.5
4,667,115	-		DDA3937_RS20495	0.28	+0.2
4,667,115	-		DDA3937_RS20495	0.28	-0.2
4,667,115	-		DDA3937_RS20495	0.28	+0.1
4,667,115	-		DDA3937_RS20495	0.28	+1.5
4,667,115	-		DDA3937_RS20495	0.28	+0.6
4,667,115	-		DDA3937_RS20495	0.28	-0.5
4,667,115	-		DDA3937_RS20495	0.28	+0.4
4,667,115	-		DDA3937_RS20495	0.28	+0.7
4,667,115	-		DDA3937_RS20495	0.28	-1.5
4,667,115	-		DDA3937_RS20495	0.28	-1.0
4,667,115	-		DDA3937_RS20495	0.28	+0.2
4,667,115	-		DDA3937_RS20495	0.28	+0.5
4,667,115	-		DDA3937_RS20495	0.28	+1.1
4,667,115	-		DDA3937_RS20495	0.28	+0.6
4,667,275	+		DDA3937_RS20495	0.44	+1.1
4,667,290	-		DDA3937_RS20495	0.46	-0.3
4,667,313	+		DDA3937_RS20495	0.48	-0.1
4,667,352	+		DDA3937_RS20495	0.52	-0.7
4,667,353	-		DDA3937_RS20495	0.52	-0.7
4,667,367	+		DDA3937_RS20495	0.54	+2.7
4,667,367	+				+0.0
4,667,367	+		DDA3937_RS20495	0.54	-0.3
4,667,367	+		DDA3937_RS20495	0.54	-0.3
4,667,367	+		DDA3937_RS20495	0.54	+0.5
4,667,388	+		DDA3937_RS20495	0.56	-1.4
4,667,388	+		DDA3937_RS20495	0.56	-0.6
4,667,389	-		DDA3937_RS20495	0.56	-1.1
4,667,409	+		DDA3937_RS20495	0.58	-0.9
4,667,410	-		DDA3937_RS20495	0.58	-0.5
4,667,619	+		DDA3937_RS20495	0.79	-0.1
4,667,619	+		DDA3937_RS20495	0.79	-0.9
4,667,619	+		DDA3937_RS20495	0.79	-0.1
4,667,619	+		DDA3937_RS20495	0.79	+0.4
4,667,619	+		DDA3937_RS20495	0.79	-0.6
4,667,619	+		DDA3937_RS20495	0.79	-0.1
4,667,620	-		DDA3937_RS20495	0.80	+0.2
4,667,620	-		DDA3937_RS20495	0.80	+2.7
4,667,620	-		DDA3937_RS20495	0.80	-0.5
4,667,620	-		DDA3937_RS20495	0.80	-0.1
4,667,719	+		DDA3937_RS20495	0.90	-0.4
4,667,720	-		DDA3937_RS20495	0.90	+0.6
4,667,731	-				-0.5
4,667,766	+				-0.5
4,667,766	+				-0.6
4,667,766	+				-0.9
4,667,767	-				-0.7
4,667,767	-				+0.0
4,667,767	-				+0.3
4,667,768	+				+0.0
4,667,768	+				-0.6
4,667,768	+				+0.6
4,667,769	-				-0.1
4,667,769	-				-2.1
4,667,781	+				-0.5
4,667,781	+				-0.7
4,667,793	+				+0.0
4,667,794	-				-0.1
4,667,794	-				+1.4
4,667,799	+				+1.5
4,667,799	+				-0.0
4,667,800	-				-0.7
4,667,800	-				+0.1
4,667,836	-				+0.3
4,667,836	-				+1.4
4,667,836	-				+0.0
4,667,865	+				-0.5
4,667,865	+				-0.3
4,667,874	-				+0.1
4,667,889	+				-1.8
4,667,890	-				-0.1
4,667,972	+		DDA3937_RS20500	0.12	-1.0
4,667,972	+		DDA3937_RS20500	0.12	-1.0
4,667,973	-		DDA3937_RS20500	0.12	+0.0
4,667,980	+		DDA3937_RS20500	0.13	-1.7
4,667,980	+		DDA3937_RS20500	0.13	-2.0
4,667,981	-		DDA3937_RS20500	0.13	-0.1
4,667,981	-		DDA3937_RS20500	0.13	+0.1
4,667,996	+		DDA3937_RS20500	0.15	-0.2
4,668,067	+		DDA3937_RS20500	0.24	+0.5
4,668,068	-		DDA3937_RS20500	0.24	-1.6
4,668,085	+		DDA3937_RS20500	0.26	-1.4
4,668,085	+		DDA3937_RS20500	0.26	-2.0
4,668,085	+		DDA3937_RS20500	0.26	-1.0
4,668,086	-		DDA3937_RS20500	0.26	-0.1
4,668,150	+		DDA3937_RS20500	0.34	+0.3
4,668,150	+		DDA3937_RS20500	0.34	-0.1
4,668,151	-		DDA3937_RS20500	0.34	+1.8
4,668,151	-		DDA3937_RS20500	0.34	-3.3
4,668,151	-		DDA3937_RS20500	0.34	-2.0
4,668,151	-		DDA3937_RS20500	0.34	-1.5
4,668,170	+		DDA3937_RS20500	0.37	-0.5
4,668,170	+		DDA3937_RS20500	0.37	-1.3
4,668,171	-		DDA3937_RS20500	0.37	-1.3
4,668,207	+				+2.3
4,668,366	+		DDA3937_RS20500	0.61	-1.0
4,668,366	+		DDA3937_RS20500	0.61	-0.0
4,668,368	+		DDA3937_RS20500	0.61	+0.7
4,668,368	+		DDA3937_RS20500	0.61	-0.2
4,668,431	+		DDA3937_RS20500	0.69	-0.6
4,668,432	-		DDA3937_RS20500	0.69	+0.5
4,668,462	+		DDA3937_RS20500	0.73	-0.7
4,668,463	-		DDA3937_RS20500	0.73	-0.3
4,668,472	+		DDA3937_RS20500	0.74	-0.3
4,668,472	+		DDA3937_RS20500	0.74	-0.5
4,668,472	+		DDA3937_RS20500	0.74	+0.2
4,668,472	+		DDA3937_RS20500	0.74	-1.3
4,668,473	-		DDA3937_RS20500	0.74	-0.1
4,668,473	-		DDA3937_RS20500	0.74	+0.0
4,668,509	+		DDA3937_RS20500	0.79	+0.6
4,668,509	+		DDA3937_RS20500	0.79	-0.9
4,668,510	-		DDA3937_RS20500	0.79	-1.1
4,668,510	-		DDA3937_RS20500	0.79	-0.3
4,668,608	+				-0.0
4,668,618	+				+1.9