Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19495

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,432,948	+		DDA3937_RS19490	0.67	-1.7
4,432,967	-		DDA3937_RS19490	0.69	-0.6
4,432,967	-		DDA3937_RS19490	0.69	+0.4
4,432,967	-		DDA3937_RS19490	0.69	-0.4
4,433,105	-		DDA3937_RS19490	0.79	-0.2
4,433,105	-		DDA3937_RS19490	0.79	-0.5
4,433,105	-		DDA3937_RS19490	0.79	-0.3
4,433,134	+		DDA3937_RS19490	0.81	-1.0
4,433,135	-		DDA3937_RS19490	0.81	-0.7
4,433,138	-		DDA3937_RS19490	0.81	-0.0
4,433,138	-		DDA3937_RS19490	0.81	+1.0
4,433,352	+				-0.8
4,433,394	-				+0.7
4,433,394	-				-1.8
4,433,432	+				-0.1
4,433,476	+				+1.0
4,433,720	+				+0.1
4,433,720	+				-0.2
4,433,721	-				+0.1
4,433,744	+				+0.1
4,433,744	+				+0.6
4,433,744	+				+0.8
4,433,744	+				-0.4
4,433,745	-				-0.1
4,433,752	+				-0.7
4,433,802	+				-0.6
4,433,803	-				-0.7
4,433,803	-				-1.5
4,433,820	+				-0.8
4,433,820	+				-0.5
4,433,820	+				-2.5
4,433,820	+				+0.1
4,433,820	+				-0.3
4,433,820	+				+1.0
4,433,820	+				-0.3
4,433,820	+				+0.3
4,433,820	+				-2.2
4,433,820	+				+0.8
4,433,820	+				-0.3
4,433,821	-				-0.3
4,433,821	-				+0.3
4,433,821	-				-0.3
4,433,821	-				-0.3
4,433,821	-				+0.6
4,433,821	-				-0.2
4,433,821	-				+3.5
4,433,824	+				+0.6
4,433,825	-				-1.0
4,433,825	-				+0.3
4,433,851	+				+1.6
4,433,851	+				-0.3
4,433,852	-				-1.0
4,433,867	-				+2.6
4,433,876	-				+1.4
4,433,889	+				-0.9
4,433,890	-				+0.1
4,434,083	+		DDA3937_RS19495	0.20	-2.0
4,434,083	+		DDA3937_RS19495	0.20	-0.3
4,434,083	+		DDA3937_RS19495	0.20	+0.0
4,434,083	+		DDA3937_RS19495	0.20	+0.6
4,434,083	+		DDA3937_RS19495	0.20	-0.0
4,434,084	-		DDA3937_RS19495	0.21	-1.0
4,434,084	-		DDA3937_RS19495	0.21	-1.0
4,434,084	-		DDA3937_RS19495	0.21	-0.1
4,434,084	-		DDA3937_RS19495	0.21	-0.5
4,434,084	-		DDA3937_RS19495	0.21	-1.2
4,434,085	+		DDA3937_RS19495	0.21	-1.5
4,434,085	+		DDA3937_RS19495	0.21	+1.3
4,434,127	+		DDA3937_RS19495	0.24	-0.9
4,434,238	+		DDA3937_RS19495	0.34	-0.6
4,434,447	-		DDA3937_RS19495	0.53	-0.5
4,434,461	+		DDA3937_RS19495	0.54	-0.7
4,434,461	+		DDA3937_RS19495	0.54	-1.2
4,434,461	+		DDA3937_RS19495	0.54	+0.1
4,434,461	+		DDA3937_RS19495	0.54	-0.7
4,434,461	+		DDA3937_RS19495	0.54	+0.3
4,434,462	-		DDA3937_RS19495	0.54	+0.2
4,434,462	-		DDA3937_RS19495	0.54	-0.4
4,434,462	-		DDA3937_RS19495	0.54	-0.3
4,434,462	-		DDA3937_RS19495	0.54	-0.2
4,434,462	-		DDA3937_RS19495	0.54	-1.8
4,434,462	-		DDA3937_RS19495	0.54	+0.7
4,434,467	+		DDA3937_RS19495	0.55	+0.2
4,434,467	+		DDA3937_RS19495	0.55	-0.4
4,434,467	+		DDA3937_RS19495	0.55	-2.0
4,434,467	+		DDA3937_RS19495	0.55	-0.8
4,434,468	-		DDA3937_RS19495	0.55	+0.1
4,434,468	-		DDA3937_RS19495	0.55	-0.1
4,434,468	-		DDA3937_RS19495	0.55	+0.2
4,434,468	-		DDA3937_RS19495	0.55	-0.3
4,434,468	-		DDA3937_RS19495	0.55	-0.2
4,434,468	-		DDA3937_RS19495	0.55	+1.0
4,434,468	-		DDA3937_RS19495	0.55	-1.1
4,434,468	-		DDA3937_RS19495	0.55	+2.0
4,434,468	-		DDA3937_RS19495	0.55	+0.7
4,434,536	+		DDA3937_RS19495	0.61	-0.4
4,434,536	+		DDA3937_RS19495	0.61	+0.4
4,434,536	+		DDA3937_RS19495	0.61	-0.3
4,434,536	+		DDA3937_RS19495	0.61	-0.1
4,434,537	-		DDA3937_RS19495	0.61	-1.1
4,434,537	-		DDA3937_RS19495	0.61	-1.0
4,434,537	-		DDA3937_RS19495	0.61	+0.3
4,434,544	+		DDA3937_RS19495	0.61	-0.3
4,434,605	+		DDA3937_RS19495	0.67	-0.6
4,434,605	+		DDA3937_RS19495	0.67	-0.5
4,434,605	+		DDA3937_RS19495	0.67	-0.7
4,434,605	+		DDA3937_RS19495	0.67	-1.3
4,434,605	+		DDA3937_RS19495	0.67	-0.5
4,434,605	+		DDA3937_RS19495	0.67	-0.0
4,434,606	-		DDA3937_RS19495	0.67	-0.4
4,434,606	-		DDA3937_RS19495	0.67	-0.3
4,434,617	+		DDA3937_RS19495	0.68	-0.1
4,434,719	+		DDA3937_RS19495	0.77	-1.2
4,434,720	-		DDA3937_RS19495	0.77	-1.5
4,434,787	+		DDA3937_RS19495	0.83	-0.1
4,434,791	+		DDA3937_RS19495	0.83	+0.4
4,434,791	+		DDA3937_RS19495	0.83	-0.6
4,434,791	+		DDA3937_RS19495	0.83	-0.5
4,434,791	+		DDA3937_RS19495	0.83	-0.0
4,434,792	-		DDA3937_RS19495	0.83	+0.3
4,434,792	-		DDA3937_RS19495	0.83	+1.6
4,434,824	+		DDA3937_RS19495	0.86	+1.6
4,434,824	+		DDA3937_RS19495	0.86	+0.1
4,434,824	+		DDA3937_RS19495	0.86	-0.3
4,434,824	+		DDA3937_RS19495	0.86	-1.5
4,434,824	+		DDA3937_RS19495	0.86	-0.7
4,434,825	-		DDA3937_RS19495	0.86	-0.8
4,434,825	-		DDA3937_RS19495	0.86	-0.3
4,434,825	-		DDA3937_RS19495	0.86	-1.1
4,434,876	-				-0.1
4,434,881	+				+0.2
4,434,881	+				-0.2
4,434,881	+				+1.7
4,434,881	+				-0.1
4,434,882	-				-0.4
4,434,882	-				+0.7
4,434,923	-				-0.7
4,434,926	+				+1.6
4,434,926	+				+0.2
4,434,927	-				+0.5
4,434,927	-				+0.3
4,434,927	-				+0.2
4,434,927	-				-0.7
4,434,973	+				+1.9
4,434,973	+				+0.3
4,434,973	+				+0.5
4,434,974	-				-0.4
4,434,978	-				+0.2
4,434,978	-				-0.3
4,435,040	+				-1.2
4,435,040	+				-1.0
4,435,129	+				-0.1
4,435,129	+				-1.2
4,435,130	-				+0.4
4,435,130	-				-0.9
4,435,130	-				+0.7
4,435,130	-				-1.4
4,435,132	-				-1.2
4,435,158	+				+0.3
4,435,159	-				-0.3
4,435,159	-				+0.5
4,435,189	+				-1.1
4,435,189	+				-0.0
4,435,189	+				-0.2
4,435,190	-				-0.6
4,435,190	-				-2.7
4,435,212	+				-0.4
4,435,339	+				+1.8
4,435,340	-				-1.0
4,435,340	-				-1.3
4,435,340	-				-0.5
4,435,343	+				+1.5
4,435,343	+				-1.5
4,435,344	-				-0.5
4,435,344	-				-0.6
4,435,344	-				+0.3
4,435,344	-				-0.4
4,435,344	-				+0.9
4,435,347	+				+0.9
4,435,348	-				+0.6
4,435,348	-				+0.4
4,435,348	-				-0.6
4,435,453	+				-0.3
4,435,453	+				-0.3
4,435,453	+				-2.6
4,435,454	-				-0.1
4,435,454	-				+0.7
4,435,454	-				+1.9
4,435,463	+				-0.5
4,435,464	-				-0.5
4,435,487	+				+0.1
4,435,487	+				-0.9
4,435,487	+				+0.3
4,435,487	+				-0.0
4,435,487	+				+0.1
4,435,488	-				-0.4
4,435,488	-				+1.5
4,435,488	-				-0.7
4,435,490	+				+0.6
4,435,490	+				+0.7
4,435,491	-				-0.3
4,435,681	-		DDA3937_RS19500	0.17	+0.3
4,435,720	+		DDA3937_RS19500	0.20	-0.8
4,435,720	+		DDA3937_RS19500	0.20	-0.1
4,435,720	+		DDA3937_RS19500	0.20	+0.2
4,435,720	+		DDA3937_RS19500	0.20	-0.8
4,435,720	+		DDA3937_RS19500	0.20	-0.2
4,435,720	+		DDA3937_RS19500	0.20	-0.5
4,435,720	+		DDA3937_RS19500	0.20	+0.6
4,435,720	+		DDA3937_RS19500	0.20	-0.7
4,435,721	-		DDA3937_RS19500	0.20	-0.7
4,435,721	-		DDA3937_RS19500	0.20	+2.1
4,435,721	-		DDA3937_RS19500	0.20	+5.5
4,435,721	-		DDA3937_RS19500	0.20	+0.1
4,435,721	-		DDA3937_RS19500	0.20	-1.0
4,435,721	-		DDA3937_RS19500	0.20	+0.3
4,435,721	-		DDA3937_RS19500	0.20	+1.3
4,435,723	-		DDA3937_RS19500	0.20	-0.4
4,435,834	-		DDA3937_RS19500	0.30	+0.3
4,435,895	+		DDA3937_RS19500	0.36	-1.3
4,435,895	+		DDA3937_RS19500	0.36	-0.0
4,435,896	-		DDA3937_RS19500	0.36	+1.3
4,435,896	-		DDA3937_RS19500	0.36	-0.4
4,435,947	+		DDA3937_RS19500	0.40	-0.1
4,435,947	+				+1.3
4,435,947	+				+1.3
4,435,948	-		DDA3937_RS19500	0.40	-1.1
4,435,948	-		DDA3937_RS19500	0.40	+1.4