Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19030

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,347,095	+		DDA3937_RS19025	0.21	+1.0
4,347,096	-		DDA3937_RS19025	0.21	+3.2
4,347,216	-		DDA3937_RS19025	0.33	+0.2
4,347,319	-		DDA3937_RS19025	0.43	-0.5
4,347,354	+		DDA3937_RS19025	0.46	-1.7
4,347,354	+		DDA3937_RS19025	0.46	-1.8
4,347,354	+		DDA3937_RS19025	0.46	+0.5
4,347,354	+		DDA3937_RS19025	0.46	-0.3
4,347,354	+		DDA3937_RS19025	0.46	+0.8
4,347,354	+		DDA3937_RS19025	0.46	-0.4
4,347,354	+		DDA3937_RS19025	0.46	-1.9
4,347,355	-		DDA3937_RS19025	0.46	-1.2
4,347,355	-		DDA3937_RS19025	0.46	-0.4
4,347,355	-		DDA3937_RS19025	0.46	+2.2
4,347,355	-		DDA3937_RS19025	0.46	-0.4
4,347,357	-		DDA3937_RS19025	0.46	+0.0
4,347,363	+		DDA3937_RS19025	0.47	-0.8
4,347,363	+		DDA3937_RS19025	0.47	+0.3
4,347,364	-		DDA3937_RS19025	0.47	-0.8
4,347,396	-		DDA3937_RS19025	0.50	-0.2
4,347,396	-		DDA3937_RS19025	0.50	-1.2
4,347,426	+		DDA3937_RS19025	0.53	+0.3
4,347,501	+		DDA3937_RS19025	0.60	-1.7
4,347,501	+		DDA3937_RS19025	0.60	+0.5
4,347,502	-		DDA3937_RS19025	0.60	-1.0
4,347,502	-		DDA3937_RS19025	0.60	-1.7
4,347,558	+		DDA3937_RS19025	0.66	-0.0
4,347,558	+		DDA3937_RS19025	0.66	-1.4
4,347,559	-		DDA3937_RS19025	0.66	+2.3
4,347,610	+		DDA3937_RS19025	0.71	-1.5
4,347,692	+		DDA3937_RS19025	0.79	-0.4
4,347,693	-		DDA3937_RS19025	0.79	-0.4
4,347,802	-		DDA3937_RS19025	0.89	-0.2
4,347,849	+				+1.6
4,347,912	+				-0.0
4,347,913	-				-0.1
4,347,913	-				-1.3
4,347,913	-				-0.4
4,347,913	-				+0.4
4,347,957	+				-0.5
4,347,957	+				-1.3
4,347,957	+				-1.3
4,347,957	+				-0.7
4,347,957	+				+0.3
4,347,957	+				-0.6
4,347,958	-				-2.7
4,347,958	-				+0.3
4,347,958	-				-1.3
4,347,958	-				-2.5
4,347,958	-				-0.6
4,347,961	+				-0.7
4,347,961	+				-0.7
4,347,961	+				-2.0
4,347,961	+				+0.4
4,347,961	+				+0.3
4,347,961	+				-0.3
4,347,961	+				-1.0
4,347,962	-				+0.1
4,347,962	-				-0.5
4,347,962	-				+1.7
4,347,971	+				-1.3
4,347,971	+				-0.6
4,347,971	+				-1.0
4,347,971	+				-1.8
4,347,971	+				+0.2
4,347,971	+				-0.2
4,347,971	+				+0.1
4,347,972	-				+0.4
4,347,972	-				+3.2
4,347,972	-				-0.7
4,347,972	-				-0.8
4,347,972	-				+0.9
4,347,972	-				-2.2
4,347,972	-				+0.0
4,347,972	-				-0.1
4,348,034	+				-0.3
4,348,034	+				+1.5
4,348,034	+				+1.3
4,348,035	-				-0.3
4,348,274	+		DDA3937_RS19030	0.18	-0.3
4,348,274	+		DDA3937_RS19030	0.18	+0.9
4,348,274	+				+1.0
4,348,274	+		DDA3937_RS19030	0.18	+1.8
4,348,484	+		DDA3937_RS19030	0.31	-1.3
4,348,484	+		DDA3937_RS19030	0.31	-0.7
4,348,484	+		DDA3937_RS19030	0.31	+0.3
4,348,484	+		DDA3937_RS19030	0.31	-0.2
4,348,485	-				-1.0
4,348,772	+		DDA3937_RS19030	0.49	-1.7
4,348,772	+		DDA3937_RS19030	0.49	+0.4
4,348,787	+		DDA3937_RS19030	0.50	+0.9
4,348,788	-		DDA3937_RS19030	0.50	+1.8
4,349,061	-		DDA3937_RS19030	0.66	-0.9
4,349,061	-				+1.3
4,349,104	+		DDA3937_RS19030	0.69	-0.7
4,349,104	+		DDA3937_RS19030	0.69	+1.3
4,349,104	+		DDA3937_RS19030	0.69	-0.9
4,349,104	+		DDA3937_RS19030	0.69	-0.8
4,349,105	-		DDA3937_RS19030	0.69	+0.9
4,349,228	-		DDA3937_RS19030	0.76	+0.2
4,349,269	-		DDA3937_RS19030	0.79	+0.9
4,349,331	+		DDA3937_RS19030	0.83	-0.7
4,349,332	-		DDA3937_RS19030	0.83	+0.5
4,349,332	-		DDA3937_RS19030	0.83	-1.5
4,349,361	+		DDA3937_RS19030	0.84	+2.1
4,349,362	-		DDA3937_RS19030	0.85	-1.0
4,349,531	+				+0.2
4,349,542	-				-1.4
4,349,559	+				+0.2
4,349,560	-				-0.3
4,349,565	+				-1.3
4,349,596	+				+0.7
4,349,596	+				-0.7
4,349,597	-				+0.4
4,349,656	+				-0.5
4,349,657	-				+0.7
4,349,657	-				-0.9
4,349,657	-				-1.4
4,349,657	-				+0.1
4,349,657	-				-1.3
4,349,660	+				+2.3
4,349,661	-				+0.3
4,349,662	+				+0.1
4,349,662	+				-0.5
4,349,662	+				-0.4
4,349,663	-				-1.9
4,349,670	+				+0.3
4,349,671	-				+0.1
4,349,711	+				+1.5
4,349,711	+				-0.3
4,349,711	+				+0.3
4,349,711	+				+0.2
4,349,711	+				-0.7
4,349,711	+				-1.2
4,349,712	-				+0.1
4,349,712	-				+1.0
4,349,759	+				-1.4
4,349,759	+				-0.5
4,349,759	+				+1.3
4,349,759	+				+0.9
4,349,759	+				-2.8
4,349,759	+				+1.3
4,349,759	+				+1.5
4,349,760	-				+0.2
4,349,760	-				-1.7
4,349,760	-				-2.5
4,349,787	+				-0.5
4,349,788	-				-1.7
4,349,788	-				-0.2
4,349,788	-				+0.3
4,349,791	+				+0.2
4,349,791	+				+0.4
4,349,792	-				+2.1
4,349,798	-				-1.3
4,349,819	+				-0.7
4,349,820	-				-1.3
4,349,837	+				-1.7
4,349,838	-				-1.1
4,349,853	+				-0.6
4,349,935	+				-0.4
4,349,935	+				+0.2
4,349,935	+				-0.5
4,349,936	-				-0.0
4,349,937	+				-0.7
4,349,937	+				-2.2
4,349,937	+				-1.1
4,349,937	+				-0.6
4,349,938	-				-0.6
4,349,938	-				-0.3
4,349,938	-				-0.6
4,349,938	-				-1.0
4,350,069	+				-1.8
4,350,069	+				-0.1
4,350,069	+				-3.3
4,350,069	+				-1.5
4,350,070	-				+0.7
4,350,070	-				-0.5
4,350,070	-				-0.4
4,350,070	-				-1.3
4,350,070	-				-1.3
4,350,070	-				-0.8
4,350,136	+		DDA3937_RS19035	0.13	-2.0
4,350,136	+		DDA3937_RS19035	0.13	-0.6
4,350,137	-		DDA3937_RS19035	0.13	-0.7
4,350,140	-		DDA3937_RS19035	0.14	-1.0
4,350,140	-		DDA3937_RS19035	0.14	+0.3
4,350,140	-		DDA3937_RS19035	0.14	-0.3
4,350,140	-		DDA3937_RS19035	0.14	+0.1
4,350,159	-		DDA3937_RS19035	0.15	+1.5
4,350,159	-		DDA3937_RS19035	0.15	-0.1
4,350,159	-		DDA3937_RS19035	0.15	-0.8
4,350,214	+		DDA3937_RS19035	0.19	+1.3
4,350,215	-		DDA3937_RS19035	0.19	+0.2
4,350,300	+		DDA3937_RS19035	0.25	-1.5
4,350,300	+		DDA3937_RS19035	0.25	-1.5