Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18890 and DDA3937_RS18895 are separated by 11 nucleotides DDA3937_RS18895 and DDA3937_RS18900 overlap by 8 nucleotides DDA3937_RS18900 and DDA3937_RS18905 are separated by 231 nucleotides DDA3937_RS18905 and DDA3937_RS18910 are separated by 12 nucleotides DDA3937_RS18910 and DDA3937_RS18915 are separated by 101 nucleotides
DDA3937_RS18890: DDA3937_RS18890 - hypothetical protein, at 4,316,633 to 4,316,932
_RS18890
DDA3937_RS18895: DDA3937_RS18895 - hypothetical protein, at 4,316,944 to 4,317,204
_RS18895
DDA3937_RS18900: DDA3937_RS18900 - helix-turn-helix transcriptional regulator, at 4,317,197 to 4,317,454
_RS18900
DDA3937_RS18905: DDA3937_RS18905 - protein nifY, at 4,317,686 to 4,318,348
_RS18905
DDA3937_RS18910: DDA3937_RS18910 - NifT/FixU family protein, at 4,318,361 to 4,318,579
_RS18910
DDA3937_RS18915: DDA3937_RS18915 - nitrogenase molybdenum-iron protein subunit beta, at 4,318,681 to 4,320,249
_RS18915
Position (kb) 4317
4318
4319 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4316.723 kb on + strand, within DDA3937_RS18890 at 4316.723 kb on + strand, within DDA3937_RS18890 at 4316.724 kb on - strand, within DDA3937_RS18890 at 4316.724 kb on - strand, within DDA3937_RS18890 at 4316.933 kb on + strand at 4316.934 kb on - strand at 4316.945 kb on + strand at 4316.946 kb on - strand at 4316.946 kb on - strand at 4316.964 kb on + strand at 4316.964 kb on + strand at 4316.990 kb on + strand, within DDA3937_RS18895 at 4316.991 kb on - strand, within DDA3937_RS18895 at 4316.991 kb on - strand, within DDA3937_RS18895 at 4317.038 kb on - strand, within DDA3937_RS18895 at 4317.038 kb on - strand, within DDA3937_RS18895 at 4317.046 kb on - strand, within DDA3937_RS18895 at 4317.077 kb on + strand, within DDA3937_RS18895 at 4317.078 kb on - strand, within DDA3937_RS18895 at 4317.078 kb on - strand, within DDA3937_RS18895 at 4317.109 kb on - strand, within DDA3937_RS18895 at 4317.111 kb on + strand, within DDA3937_RS18895 at 4317.111 kb on + strand, within DDA3937_RS18895 at 4317.112 kb on - strand, within DDA3937_RS18895 at 4317.112 kb on - strand, within DDA3937_RS18895 at 4317.112 kb on - strand, within DDA3937_RS18895 at 4317.198 kb on + strand at 4317.199 kb on - strand at 4317.199 kb on - strand at 4317.216 kb on - strand at 4317.216 kb on - strand at 4317.275 kb on + strand, within DDA3937_RS18900 at 4317.276 kb on - strand, within DDA3937_RS18900 at 4317.294 kb on + strand, within DDA3937_RS18900 at 4317.437 kb on - strand at 4317.473 kb on + strand at 4317.473 kb on + strand at 4317.485 kb on + strand at 4317.486 kb on - strand at 4317.486 kb on - strand at 4317.496 kb on + strand at 4317.497 kb on - strand at 4317.511 kb on + strand at 4317.512 kb on - strand at 4317.517 kb on + strand at 4317.517 kb on + strand at 4317.519 kb on + strand at 4317.519 kb on + strand at 4317.519 kb on + strand at 4317.520 kb on - strand at 4317.520 kb on - strand at 4317.520 kb on - strand at 4317.523 kb on + strand at 4317.523 kb on + strand at 4317.523 kb on + strand at 4317.524 kb on - strand at 4317.524 kb on - strand at 4317.524 kb on - strand at 4317.524 kb on - strand at 4317.527 kb on - strand at 4317.535 kb on + strand at 4317.535 kb on + strand at 4317.535 kb on + strand at 4317.536 kb on - strand at 4317.536 kb on - strand at 4317.536 kb on - strand at 4317.536 kb on - strand at 4317.543 kb on - strand at 4317.551 kb on - strand at 4317.557 kb on - strand at 4317.562 kb on + strand at 4317.596 kb on + strand at 4317.597 kb on - strand at 4317.597 kb on - strand at 4317.623 kb on + strand at 4317.623 kb on + strand at 4317.623 kb on + strand at 4317.623 kb on + strand at 4317.623 kb on + strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.624 kb on - strand at 4317.626 kb on - strand at 4317.626 kb on - strand at 4317.663 kb on + strand at 4317.664 kb on - strand at 4317.664 kb on - strand at 4317.679 kb on + strand at 4317.679 kb on + strand at 4317.679 kb on + strand at 4317.680 kb on - strand at 4317.698 kb on - strand at 4317.826 kb on + strand, within DDA3937_RS18905 at 4317.827 kb on - strand, within DDA3937_RS18905 at 4317.827 kb on - strand, within DDA3937_RS18905 at 4317.827 kb on - strand, within DDA3937_RS18905 at 4317.827 kb on - strand, within DDA3937_RS18905 at 4317.949 kb on - strand, within DDA3937_RS18905 at 4317.993 kb on + strand, within DDA3937_RS18905 at 4317.993 kb on + strand, within DDA3937_RS18905 at 4317.993 kb on + strand, within DDA3937_RS18905 at 4317.993 kb on + strand, within DDA3937_RS18905 at 4317.993 kb on + strand, within DDA3937_RS18905 at 4317.993 kb on + strand, within DDA3937_RS18905 at 4317.994 kb on - strand, within DDA3937_RS18905 at 4317.994 kb on - strand, within DDA3937_RS18905 at 4317.997 kb on + strand, within DDA3937_RS18905 at 4317.997 kb on + strand, within DDA3937_RS18905 at 4318.067 kb on + strand, within DDA3937_RS18905 at 4318.067 kb on + strand, within DDA3937_RS18905 at 4318.067 kb on + strand, within DDA3937_RS18905 at 4318.431 kb on + strand, within DDA3937_RS18910 at 4318.431 kb on + strand, within DDA3937_RS18910 at 4318.431 kb on + strand, within DDA3937_RS18910 at 4318.431 kb on + strand, within DDA3937_RS18910 at 4318.431 kb on + strand, within DDA3937_RS18910 at 4318.432 kb on - strand, within DDA3937_RS18910 at 4318.432 kb on - strand, within DDA3937_RS18910 at 4318.434 kb on + strand, within DDA3937_RS18910 at 4318.435 kb on - strand, within DDA3937_RS18910 at 4318.435 kb on - strand, within DDA3937_RS18910 at 4318.435 kb on - strand, within DDA3937_RS18910 at 4318.435 kb on - strand, within DDA3937_RS18910 at 4318.435 kb on - strand, within DDA3937_RS18910 at 4318.533 kb on + strand at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.533 kb on + strand, within DDA3937_RS18910 at 4318.534 kb on - strand, within DDA3937_RS18910 at 4318.534 kb on - strand, within DDA3937_RS18910 at 4318.534 kb on - strand, within DDA3937_RS18910 at 4318.539 kb on + strand, within DDA3937_RS18910 at 4318.539 kb on + strand, within DDA3937_RS18910 at 4318.539 kb on + strand, within DDA3937_RS18910 at 4318.539 kb on + strand, within DDA3937_RS18910 at 4318.540 kb on - strand, within DDA3937_RS18910 at 4318.540 kb on - strand, within DDA3937_RS18910 at 4318.540 kb on - strand, within DDA3937_RS18910 at 4318.540 kb on - strand, within DDA3937_RS18910 at 4318.540 kb on - strand, within DDA3937_RS18910 at 4318.703 kb on + strand at 4318.703 kb on + strand at 4318.704 kb on - strand at 4318.988 kb on + strand, within DDA3937_RS18915 at 4318.988 kb on + strand, within DDA3937_RS18915 at 4318.988 kb on + strand, within DDA3937_RS18915 at 4318.988 kb on + strand, within DDA3937_RS18915 at 4318.988 kb on + strand, within DDA3937_RS18915 at 4318.989 kb on - strand, within DDA3937_RS18915 at 4318.989 kb on - strand, within DDA3937_RS18915 at 4318.989 kb on - strand, within DDA3937_RS18915 at 4318.989 kb on - strand, within DDA3937_RS18915 at 4318.989 kb on - strand, within DDA3937_RS18915 at 4319.144 kb on + strand, within DDA3937_RS18915 at 4319.145 kb on - strand, within DDA3937_RS18915
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,316,723 + DDA3937_RS18890 0.30 -2.8 4,316,723 + DDA3937_RS18890 0.30 -0.8 4,316,724 - DDA3937_RS18890 0.30 -0.5 4,316,724 - DDA3937_RS18890 0.30 -0.4 4,316,933 + +0.2 4,316,934 - +0.6 4,316,945 + +0.7 4,316,946 - -0.1 4,316,946 - -2.0 4,316,964 + +2.3 4,316,964 + -0.9 4,316,990 + DDA3937_RS18895 0.18 +0.0 4,316,991 - DDA3937_RS18895 0.18 -1.5 4,316,991 - DDA3937_RS18895 0.18 +0.9 4,317,038 - DDA3937_RS18895 0.36 -1.3 4,317,038 - DDA3937_RS18895 0.36 -1.2 4,317,046 - DDA3937_RS18895 0.39 +1.5 4,317,077 + DDA3937_RS18895 0.51 +0.3 4,317,078 - DDA3937_RS18895 0.51 -0.7 4,317,078 - DDA3937_RS18895 0.51 -0.3 4,317,109 - DDA3937_RS18895 0.63 -0.3 4,317,111 + DDA3937_RS18895 0.64 +1.3 4,317,111 + DDA3937_RS18895 0.64 +0.1 4,317,112 - DDA3937_RS18895 0.64 +0.3 4,317,112 - DDA3937_RS18895 0.64 -0.8 4,317,112 - DDA3937_RS18895 0.64 -0.3 4,317,198 + -0.0 4,317,199 - -0.5 4,317,199 - -0.0 4,317,216 - -0.9 4,317,216 - +0.2 4,317,275 + DDA3937_RS18900 0.30 +0.3 4,317,276 - DDA3937_RS18900 0.31 -0.1 4,317,294 + DDA3937_RS18900 0.38 +0.7 4,317,437 - -0.3 4,317,473 + -0.8 4,317,473 + -2.3 4,317,485 + -0.7 4,317,486 - -0.3 4,317,486 - -0.9 4,317,496 + -1.7 4,317,497 - -0.0 4,317,511 + +0.4 4,317,512 - +0.2 4,317,517 + -0.5 4,317,517 + +0.0 4,317,519 + +0.9 4,317,519 + -1.4 4,317,519 + +1.3 4,317,520 - -1.5 4,317,520 - +0.5 4,317,520 - -1.7 4,317,523 + -1.3 4,317,523 + -0.6 4,317,523 + +0.6 4,317,524 - +5.6 4,317,524 - -0.3 4,317,524 - -0.7 4,317,524 - +0.8 4,317,527 - -2.2 4,317,535 + +1.5 4,317,535 + -0.4 4,317,535 + -0.3 4,317,536 - -0.3 4,317,536 - +0.7 4,317,536 - -0.3 4,317,536 - -0.3 4,317,543 - +2.7 4,317,551 - +0.3 4,317,557 - +0.0 4,317,562 + +0.6 4,317,596 + -0.7 4,317,597 - +0.6 4,317,597 - -0.4 4,317,623 + -0.8 4,317,623 + +1.3 4,317,623 + +0.0 4,317,623 + -0.7 4,317,623 + -2.5 4,317,624 - +0.2 4,317,624 - -0.4 4,317,624 - -0.2 4,317,624 - +0.4 4,317,624 - -0.4 4,317,624 - -0.6 4,317,624 - -0.4 4,317,624 - +0.3 4,317,624 - +0.1 4,317,624 - +2.4 4,317,624 - -2.2 4,317,626 - -0.3 4,317,626 - -1.0 4,317,663 + -0.2 4,317,664 - -0.0 4,317,664 - -1.7 4,317,679 + +0.2 4,317,679 + -0.1 4,317,679 + -0.9 4,317,680 - +0.3 4,317,698 - -0.0 4,317,826 + DDA3937_RS18905 0.21 +0.6 4,317,827 - DDA3937_RS18905 0.21 +0.3 4,317,827 - DDA3937_RS18905 0.21 -0.2 4,317,827 - DDA3937_RS18905 0.21 +0.2 4,317,827 - DDA3937_RS18905 0.21 +0.6 4,317,949 - DDA3937_RS18905 0.40 -0.3 4,317,993 + DDA3937_RS18905 0.46 -1.3 4,317,993 + DDA3937_RS18905 0.46 -0.2 4,317,993 + DDA3937_RS18905 0.46 +1.3 4,317,993 + DDA3937_RS18905 0.46 -0.6 4,317,993 + DDA3937_RS18905 0.46 +0.7 4,317,993 + DDA3937_RS18905 0.46 -0.4 4,317,994 - DDA3937_RS18905 0.46 -0.5 4,317,994 - DDA3937_RS18905 0.46 +0.7 4,317,997 + DDA3937_RS18905 0.47 +0.1 4,317,997 + DDA3937_RS18905 0.47 -1.7 4,318,067 + DDA3937_RS18905 0.57 -1.1 4,318,067 + DDA3937_RS18905 0.57 +6.3 4,318,067 + DDA3937_RS18905 0.57 +1.1 4,318,431 + DDA3937_RS18910 0.32 +0.4 4,318,431 + DDA3937_RS18910 0.32 -1.7 4,318,431 + DDA3937_RS18910 0.32 -1.3 4,318,431 + DDA3937_RS18910 0.32 -0.6 4,318,431 + DDA3937_RS18910 0.32 -0.3 4,318,432 - DDA3937_RS18910 0.32 +2.5 4,318,432 - DDA3937_RS18910 0.32 +1.3 4,318,434 + DDA3937_RS18910 0.33 +0.8 4,318,435 - DDA3937_RS18910 0.34 +0.9 4,318,435 - DDA3937_RS18910 0.34 -0.6 4,318,435 - DDA3937_RS18910 0.34 +0.4 4,318,435 - DDA3937_RS18910 0.34 -2.0 4,318,435 - DDA3937_RS18910 0.34 -0.2 4,318,533 + -1.0 4,318,533 + DDA3937_RS18910 0.79 -1.4 4,318,533 + DDA3937_RS18910 0.79 +0.3 4,318,533 + DDA3937_RS18910 0.79 -0.2 4,318,533 + DDA3937_RS18910 0.79 +0.1 4,318,533 + DDA3937_RS18910 0.79 +0.5 4,318,533 + DDA3937_RS18910 0.79 +1.3 4,318,533 + DDA3937_RS18910 0.79 -0.1 4,318,533 + DDA3937_RS18910 0.79 +0.6 4,318,534 - DDA3937_RS18910 0.79 -1.8 4,318,534 - DDA3937_RS18910 0.79 +1.2 4,318,534 - DDA3937_RS18910 0.79 +1.3 4,318,539 + DDA3937_RS18910 0.81 -0.0 4,318,539 + DDA3937_RS18910 0.81 +1.1 4,318,539 + DDA3937_RS18910 0.81 -0.5 4,318,539 + DDA3937_RS18910 0.81 +0.1 4,318,540 - DDA3937_RS18910 0.82 +0.4 4,318,540 - DDA3937_RS18910 0.82 -0.4 4,318,540 - DDA3937_RS18910 0.82 -0.4 4,318,540 - DDA3937_RS18910 0.82 +0.2 4,318,540 - DDA3937_RS18910 0.82 +0.3 4,318,703 + +0.1 4,318,703 + +0.5 4,318,704 - -0.0 4,318,988 + DDA3937_RS18915 0.20 +0.4 4,318,988 + DDA3937_RS18915 0.20 +0.1 4,318,988 + DDA3937_RS18915 0.20 +0.3 4,318,988 + DDA3937_RS18915 0.20 -0.5 4,318,988 + DDA3937_RS18915 0.20 -0.5 4,318,989 - DDA3937_RS18915 0.20 -1.2 4,318,989 - DDA3937_RS18915 0.20 -0.1 4,318,989 - DDA3937_RS18915 0.20 +0.8 4,318,989 - DDA3937_RS18915 0.20 +0.3 4,318,989 - DDA3937_RS18915 0.20 -0.6 4,319,144 + DDA3937_RS18915 0.30 -0.3 4,319,145 - DDA3937_RS18915 0.30 -0.8
Or see this region's nucleotide sequence