Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18615

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,253,544	-		DDA3937_RS18605	0.87	-0.1
4,253,544	-		DDA3937_RS18605	0.87	-0.4
4,253,544	-		DDA3937_RS18605	0.87	-1.2
4,253,593	+				+0.6
4,253,641	-				+0.7
4,253,661	-				-1.3
4,253,665	-				+0.5
4,253,665	-				+0.3
4,253,671	+				+0.3
4,253,671	+				-0.7
4,253,671	+				+0.1
4,253,672	-				+1.5
4,253,672	-				-0.2
4,253,672	-				+0.0
4,253,672	-				+1.5
4,253,672	-				+1.6
4,253,672	-				+0.9
4,253,672	-				+0.0
4,253,672	-				+0.3
4,253,672	-				-0.9
4,253,672	-				+1.3
4,253,672	-				-1.4
4,253,672	-				+2.6
4,253,672	-				-0.1
4,253,672	-				-0.7
4,253,672	-				-1.5
4,253,672	-				+0.1
4,253,675	-				+0.1
4,253,675	-				+0.3
4,253,675	-				-0.1
4,253,675	-				+0.2
4,253,675	-				+0.8
4,253,675	-				-1.1
4,253,697	-				+1.0
4,253,782	-				+2.3
4,253,790	-				+0.5
4,253,860	+				+0.7
4,253,860	+		DDA3937_RS18610	0.20	+2.5
4,253,861	-		DDA3937_RS18610	0.21	+2.2
4,253,861	-		DDA3937_RS18610	0.21	+1.5
4,253,861	-		DDA3937_RS18610	0.21	+5.5
4,253,861	-		DDA3937_RS18610	0.21	+1.7
4,253,861	-		DDA3937_RS18610	0.21	+1.5
4,253,865	-				+2.9
4,253,865	-		DDA3937_RS18610	0.22	+1.4
4,253,883	-		DDA3937_RS18610	0.28	+2.3
4,253,883	-		DDA3937_RS18610	0.28	+1.4
4,253,883	-		DDA3937_RS18610	0.28	+1.5
4,253,883	-		DDA3937_RS18610	0.28	+1.4
4,253,883	-		DDA3937_RS18610	0.28	-0.5
4,253,883	-		DDA3937_RS18610	0.28	+1.7
4,253,885	+		DDA3937_RS18610	0.29	+1.5
4,253,886	-		DDA3937_RS18610	0.29	+1.8
4,253,886	-		DDA3937_RS18610	0.29	+1.6
4,253,886	-		DDA3937_RS18610	0.29	+0.9
4,253,886	-		DDA3937_RS18610	0.29	+4.8
4,253,886	-		DDA3937_RS18610	0.29	+1.9
4,253,886	-		DDA3937_RS18610	0.29	+1.6
4,253,886	-		DDA3937_RS18610	0.29	+2.0
4,253,886	-		DDA3937_RS18610	0.29	+2.8
4,253,914	-		DDA3937_RS18610	0.38	-2.4
4,253,914	-		DDA3937_RS18610	0.38	+0.5
4,253,914	-		DDA3937_RS18610	0.38	-1.6
4,253,918	+				+0.5
4,253,919	-		DDA3937_RS18610	0.40	+1.3
4,253,935	+		DDA3937_RS18610	0.45	+1.3
4,253,935	+		DDA3937_RS18610	0.45	-1.7
4,253,936	-		DDA3937_RS18610	0.46	-2.5
4,253,936	-		DDA3937_RS18610	0.46	-1.8
4,254,026	-		DDA3937_RS18610	0.76	+1.3
4,254,026	-		DDA3937_RS18610	0.76	-2.4
4,254,026	-		DDA3937_RS18610	0.76	-0.3
4,254,026	-		DDA3937_RS18610	0.76	-1.9
4,254,026	-		DDA3937_RS18610	0.76	+0.6
4,254,101	+				-1.1
4,254,102	-				-0.2
4,254,102	-				+1.2
4,254,104	-				+0.3
4,254,104	-				-0.0
4,254,104	-				+0.4
4,254,104	-				-0.2
4,254,124	-				+0.3
4,254,124	-				+0.1
4,254,155	+				-1.7
4,254,194	+				+0.9
4,254,222	+				+0.1
4,254,223	-				-0.1
4,254,223	-				-1.4
4,254,223	-				-1.0
4,254,228	-				-0.1
4,254,228	-				-1.6
4,254,240	-				+1.6
4,254,244	+				+1.3
4,254,244	+				+1.5
4,254,244	+				-0.2
4,254,244	+				-0.2
4,254,244	+				-0.3
4,254,244	+				+0.6
4,254,244	+				+1.4
4,254,245	-				-0.1
4,254,245	-				-0.3
4,254,245	-				-0.3
4,254,251	+				-0.7
4,254,252	-				-0.2
4,254,379	+		DDA3937_RS18615	0.14	+1.3
4,254,380	-		DDA3937_RS18615	0.15	-0.3
4,254,395	-		DDA3937_RS18615	0.16	+1.3
4,254,415	+		DDA3937_RS18615	0.18	+0.7
4,254,415	+		DDA3937_RS18615	0.18	+0.3
4,255,149	-				-0.6
4,255,223	+				-1.7
4,255,223	+				-0.3
4,255,223	+				-0.1
4,255,223	+				+0.5
4,255,223	+				-1.5
4,255,224	-				-0.1
4,255,224	-				-0.4
4,255,224	-				-0.7
4,255,224	-				+1.0
4,255,224	-				+4.4
4,255,224	-				-0.7
4,255,224	-				-2.1
4,255,224	-				+0.7
4,255,224	-				-0.9
4,255,225	+				-1.1
4,255,225	+				+0.4
4,255,225	+				+1.2
4,255,225	+				-0.3
4,255,225	+				+1.3
4,255,226	-				+0.1
4,255,226	-				-0.6
4,255,226	-				-0.3
4,255,226	-				-0.9
4,255,226	-				+0.2
4,255,273	+				+0.5
4,255,273	+				-0.8
4,255,274	-				-1.1
4,255,274	-				-0.2
4,255,392	-		DDA3937_RS18620	0.11	+2.1
4,255,392	-		DDA3937_RS18620	0.11	-1.0
4,255,483	+		DDA3937_RS18620	0.16	-0.3
4,255,483	+		DDA3937_RS18620	0.16	-1.7
4,255,484	-		DDA3937_RS18620	0.16	+1.1
4,255,489	+		DDA3937_RS18620	0.16	-0.9
4,255,489	+				-0.3
4,255,490	-		DDA3937_RS18620	0.16	+0.0
4,255,588	+		DDA3937_RS18620	0.21	-0.2
4,255,589	-		DDA3937_RS18620	0.21	+0.4
4,255,635	-		DDA3937_RS18620	0.24	+0.9
4,255,679	+		DDA3937_RS18620	0.26	-0.4
4,255,694	+		DDA3937_RS18620	0.27	-0.3
4,255,694	+		DDA3937_RS18620	0.27	-1.1
4,255,694	+		DDA3937_RS18620	0.27	-1.1
4,255,694	+		DDA3937_RS18620	0.27	+0.2
4,255,695	-		DDA3937_RS18620	0.27	-0.7
4,255,695	-		DDA3937_RS18620	0.27	-0.7
4,255,695	-		DDA3937_RS18620	0.27	-1.1
4,255,695	-		DDA3937_RS18620	0.27	-1.3
4,255,707	-		DDA3937_RS18620	0.27	-0.6
4,255,890	-		DDA3937_RS18620	0.37	-1.1
4,256,134	+		DDA3937_RS18620	0.49	-1.2
4,256,153	+		DDA3937_RS18620	0.50	-0.4
4,256,153	+		DDA3937_RS18620	0.50	+0.3
4,256,154	-		DDA3937_RS18620	0.50	+0.0
4,256,154	-		DDA3937_RS18620	0.50	-0.4
4,256,154	-		DDA3937_RS18620	0.50	-0.4
4,256,157	+		DDA3937_RS18620	0.50	+1.3
4,256,157	+		DDA3937_RS18620	0.50	-0.8
4,256,157	+		DDA3937_RS18620	0.50	+0.4
4,256,157	+		DDA3937_RS18620	0.50	-1.9
4,256,157	+		DDA3937_RS18620	0.50	-0.5
4,256,157	+		DDA3937_RS18620	0.50	+0.6
4,256,158	-		DDA3937_RS18620	0.51	-1.2
4,256,168	-		DDA3937_RS18620	0.51	-1.3
4,256,168	-		DDA3937_RS18620	0.51	-1.3
4,256,168	-		DDA3937_RS18620	0.51	+1.4