Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18240

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,164,859	+		DDA3937_RS18235	0.75	-1.4
4,164,913	+		DDA3937_RS18235	0.77	-1.1
4,164,913	+		DDA3937_RS18235	0.77	+0.3
4,164,913	+		DDA3937_RS18235	0.77	-0.2
4,164,913	+		DDA3937_RS18235	0.77	-0.9
4,164,913	+		DDA3937_RS18235	0.77	-1.3
4,164,913	+		DDA3937_RS18235	0.77	-0.2
4,164,913	+		DDA3937_RS18235	0.77	-1.4
4,164,914	-		DDA3937_RS18235	0.77	+1.0
4,164,914	-		DDA3937_RS18235	0.77	+0.9
4,164,914	-		DDA3937_RS18235	0.77	-0.4
4,164,914	-		DDA3937_RS18235	0.77	+0.2
4,164,914	-		DDA3937_RS18235	0.77	-0.7
4,164,914	-		DDA3937_RS18235	0.77	-0.6
4,165,083	-		DDA3937_RS18235	0.83	-0.3
4,165,136	+		DDA3937_RS18235	0.85	-2.6
4,165,136	+		DDA3937_RS18235	0.85	-0.6
4,165,136	+		DDA3937_RS18235	0.85	-0.1
4,165,136	+		DDA3937_RS18235	0.85	-0.1
4,165,137	-		DDA3937_RS18235	0.85	+1.4
4,165,291	+		DDA3937_RS18235	0.90	-0.3
4,165,583	+				-1.4
4,165,583	+				-0.6
4,165,601	+				-0.1
4,165,601	+				+0.3
4,165,601	+				+0.2
4,165,601	+				+0.5
4,165,601	+				-0.6
4,165,601	+				+0.3
4,165,601	+				-0.5
4,165,601	+				+1.1
4,165,602	-				-0.9
4,165,602	-				-0.4
4,165,603	+				+0.6
4,165,603	+				+0.4
4,165,603	+				-0.9
4,165,603	+				+0.6
4,165,604	-				-2.5
4,165,604	-				+0.2
4,165,604	-				-0.4
4,165,604	-				+1.5
4,165,605	+				-1.2
4,165,605	+				+0.2
4,165,605	+				-0.5
4,165,605	+				-0.8
4,165,605	+				+0.6
4,165,606	-				-0.2
4,165,606	-				-1.1
4,165,606	-				+0.2
4,165,606	-				-1.4
4,165,606	-				-0.8
4,165,606	-				-0.6
4,165,606	-				+0.0
4,165,606	-				+0.4
4,165,606	-				-0.5
4,165,659	+				-0.9
4,165,660	-				-0.4
4,165,781	+		DDA3937_RS18240	0.20	-0.2
4,165,781	+		DDA3937_RS18240	0.20	+1.2
4,165,781	+		DDA3937_RS18240	0.20	+1.2
4,165,781	+		DDA3937_RS18240	0.20	+0.3
4,165,782	-				+1.2
4,165,782	-		DDA3937_RS18240	0.20	-0.6
4,165,782	-		DDA3937_RS18240	0.20	-1.8
4,165,782	-		DDA3937_RS18240	0.20	-0.9
4,165,782	-		DDA3937_RS18240	0.20	+0.5
4,165,782	-		DDA3937_RS18240	0.20	-1.0
4,165,782	-		DDA3937_RS18240	0.20	-0.6
4,165,929	+		DDA3937_RS18240	0.43	-1.6
4,165,929	+		DDA3937_RS18240	0.43	-1.0
4,165,930	-		DDA3937_RS18240	0.43	-0.5
4,165,930	-		DDA3937_RS18240	0.43	-2.1
4,165,930	-		DDA3937_RS18240	0.43	+0.3
4,165,930	-		DDA3937_RS18240	0.43	-1.8
4,166,185	-		DDA3937_RS18240	0.82	-0.6
4,166,185	-		DDA3937_RS18240	0.82	+0.3
4,166,185	-		DDA3937_RS18240	0.82	+0.1
4,166,264	+				-1.1
4,166,351	-				-0.0
4,166,395	+				+0.6
4,166,395	+				-1.6
4,166,395	+				-0.4
4,166,396	-				-0.1
4,166,396	-				+0.4
4,166,396	-				-1.2
4,166,402	-				+2.8
4,166,414	+				-0.4
4,166,559	-		DDA3937_RS18245	0.20	-0.6
4,166,614	+		DDA3937_RS18245	0.25	-2.4
4,166,629	+		DDA3937_RS18245	0.27	-1.9
4,166,630	-		DDA3937_RS18245	0.27	+0.6
4,166,651	-		DDA3937_RS18245	0.29	-0.2
4,166,701	+		DDA3937_RS18245	0.34	+1.3
4,166,701	+		DDA3937_RS18245	0.34	-0.0
4,166,701	+		DDA3937_RS18245	0.34	-0.3
4,166,702	-		DDA3937_RS18245	0.34	-0.5
4,166,702	-		DDA3937_RS18245	0.34	+1.0
4,166,702	-		DDA3937_RS18245	0.34	-0.5
4,166,702	-		DDA3937_RS18245	0.34	-0.9
4,166,702	-		DDA3937_RS18245	0.34	+1.5
4,166,749	+		DDA3937_RS18245	0.39	+0.2
4,166,749	+		DDA3937_RS18245	0.39	-1.9
4,166,749	+		DDA3937_RS18245	0.39	-0.8
4,166,750	-		DDA3937_RS18245	0.39	+1.1
4,166,750	-		DDA3937_RS18245	0.39	-0.1
4,166,753	+				+0.2
4,166,753	+		DDA3937_RS18245	0.39	-0.4
4,166,753	+		DDA3937_RS18245	0.39	-1.1
4,166,753	+		DDA3937_RS18245	0.39	-0.4
4,166,754	-		DDA3937_RS18245	0.39	-1.1
4,166,754	-		DDA3937_RS18245	0.39	+0.3
4,166,754	-		DDA3937_RS18245	0.39	-2.1
4,166,754	-		DDA3937_RS18245	0.39	-2.9
4,166,754	-		DDA3937_RS18245	0.39	-0.2
4,166,754	-		DDA3937_RS18245	0.39	-1.9
4,166,754	-		DDA3937_RS18245	0.39	-1.2
4,166,754	-		DDA3937_RS18245	0.39	+0.5
4,166,822	+		DDA3937_RS18245	0.46	-0.6
4,166,822	+				+0.8
4,166,822	+		DDA3937_RS18245	0.46	+1.5
4,166,823	-		DDA3937_RS18245	0.46	-1.2
4,166,823	-		DDA3937_RS18245	0.46	+1.9
4,166,826	-		DDA3937_RS18245	0.47	+0.7
4,166,826	-		DDA3937_RS18245	0.47	+0.1
4,166,881	+		DDA3937_RS18245	0.52	-1.9
4,166,881	+		DDA3937_RS18245	0.52	-0.9
4,166,881	+		DDA3937_RS18245	0.52	-0.8
4,166,881	+		DDA3937_RS18245	0.52	-1.4
4,166,881	+		DDA3937_RS18245	0.52	-1.8
4,166,881	+		DDA3937_RS18245	0.52	-0.6
4,166,882	-		DDA3937_RS18245	0.52	+0.0
4,166,882	-		DDA3937_RS18245	0.52	-0.5
4,166,882	-		DDA3937_RS18245	0.52	-0.4
4,166,883	+		DDA3937_RS18245	0.53	-0.6
4,166,883	+		DDA3937_RS18245	0.53	-0.7
4,166,883	+		DDA3937_RS18245	0.53	+0.2
4,166,883	+		DDA3937_RS18245	0.53	-0.4
4,166,883	+		DDA3937_RS18245	0.53	-1.9
4,166,884	-		DDA3937_RS18245	0.53	+0.2
4,166,884	-		DDA3937_RS18245	0.53	+0.2
4,166,884	-		DDA3937_RS18245	0.53	+2.4
4,166,884	-		DDA3937_RS18245	0.53	-1.9
4,166,884	-		DDA3937_RS18245	0.53	-0.9
4,166,907	+		DDA3937_RS18245	0.55	-1.2
4,166,907	+		DDA3937_RS18245	0.55	+1.3
4,166,907	+				-0.1
4,166,908	-		DDA3937_RS18245	0.55	-0.8
4,166,908	-		DDA3937_RS18245	0.55	+0.2
4,167,008	+		DDA3937_RS18245	0.65	-1.4
4,167,009	-		DDA3937_RS18245	0.65	-1.6
4,167,146	+		DDA3937_RS18245	0.79	-1.1