Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS17955 and DDA3937_RS17960 are separated by 261 nucleotides DDA3937_RS17960 and DDA3937_RS17965 are separated by 5 nucleotides DDA3937_RS17965 and DDA3937_RS17970 are separated by 9 nucleotides
DDA3937_RS17955: DDA3937_RS17955 - carboxylating nicotinate-nucleotide diphosphorylase, at 4,099,312 to 4,100,202
_RS17955
DDA3937_RS17960: DDA3937_RS17960 - prepilin peptidase-dependent pilin, at 4,100,464 to 4,100,907
_RS17960
DDA3937_RS17965: DDA3937_RS17965 - type II secretion system protein GspE, at 4,100,913 to 4,102,364
_RS17965
DDA3937_RS17970: DDA3937_RS17970 - protein transport protein HofC, at 4,102,374 to 4,103,579
_RS17970
Position (kb) 4100
4101
4102
4103 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.137 kb on + strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.138 kb on - strand at 4100.139 kb on + strand at 4100.139 kb on + strand at 4100.139 kb on + strand at 4100.139 kb on + strand at 4100.139 kb on + strand at 4100.140 kb on - strand at 4100.140 kb on - strand at 4100.140 kb on - strand at 4100.196 kb on + strand at 4100.196 kb on + strand at 4100.197 kb on - strand at 4100.197 kb on - strand at 4100.197 kb on - strand at 4100.200 kb on + strand at 4100.201 kb on - strand at 4100.226 kb on + strand at 4100.227 kb on - strand at 4100.227 kb on - strand at 4100.488 kb on - strand at 4100.488 kb on - strand at 4100.488 kb on - strand at 4100.549 kb on - strand, within DDA3937_RS17960 at 4100.557 kb on + strand, within DDA3937_RS17960 at 4100.557 kb on + strand, within DDA3937_RS17960 at 4100.558 kb on - strand, within DDA3937_RS17960 at 4100.607 kb on + strand, within DDA3937_RS17960 at 4100.607 kb on + strand, within DDA3937_RS17960 at 4100.638 kb on - strand, within DDA3937_RS17960 at 4100.701 kb on + strand, within DDA3937_RS17960 at 4100.701 kb on + strand, within DDA3937_RS17960 at 4100.701 kb on + strand, within DDA3937_RS17960 at 4100.702 kb on - strand, within DDA3937_RS17960 at 4100.778 kb on + strand, within DDA3937_RS17960 at 4100.779 kb on - strand, within DDA3937_RS17960 at 4100.853 kb on + strand, within DDA3937_RS17960 at 4100.853 kb on + strand, within DDA3937_RS17960 at 4100.854 kb on - strand, within DDA3937_RS17960 at 4100.912 kb on + strand at 4100.912 kb on + strand at 4100.913 kb on - strand at 4100.913 kb on - strand at 4100.930 kb on - strand at 4100.947 kb on + strand at 4100.947 kb on + strand at 4100.947 kb on + strand at 4100.947 kb on + strand at 4100.947 kb on + strand at 4100.948 kb on - strand at 4100.948 kb on - strand at 4100.948 kb on - strand at 4101.113 kb on + strand, within DDA3937_RS17965 at 4101.113 kb on + strand, within DDA3937_RS17965 at 4101.113 kb on + strand, within DDA3937_RS17965 at 4101.114 kb on - strand, within DDA3937_RS17965 at 4101.114 kb on - strand, within DDA3937_RS17965 at 4101.114 kb on - strand, within DDA3937_RS17965 at 4101.114 kb on - strand, within DDA3937_RS17965 at 4101.147 kb on + strand, within DDA3937_RS17965 at 4101.169 kb on + strand, within DDA3937_RS17965 at 4101.294 kb on - strand, within DDA3937_RS17965 at 4101.294 kb on - strand, within DDA3937_RS17965 at 4101.444 kb on + strand, within DDA3937_RS17965 at 4101.444 kb on + strand, within DDA3937_RS17965 at 4101.444 kb on + strand, within DDA3937_RS17965 at 4101.444 kb on + strand, within DDA3937_RS17965 at 4101.445 kb on - strand, within DDA3937_RS17965 at 4101.445 kb on - strand, within DDA3937_RS17965 at 4101.445 kb on - strand, within DDA3937_RS17965 at 4101.496 kb on + strand, within DDA3937_RS17965 at 4101.496 kb on + strand, within DDA3937_RS17965 at 4101.496 kb on + strand, within DDA3937_RS17965 at 4101.497 kb on - strand, within DDA3937_RS17965 at 4101.497 kb on - strand, within DDA3937_RS17965 at 4101.497 kb on - strand, within DDA3937_RS17965 at 4101.497 kb on - strand, within DDA3937_RS17965 at 4101.633 kb on - strand, within DDA3937_RS17965 at 4101.648 kb on + strand, within DDA3937_RS17965 at 4101.648 kb on + strand, within DDA3937_RS17965 at 4101.648 kb on + strand, within DDA3937_RS17965 at 4101.649 kb on - strand, within DDA3937_RS17965 at 4101.649 kb on - strand, within DDA3937_RS17965 at 4101.687 kb on - strand, within DDA3937_RS17965 at 4101.687 kb on - strand, within DDA3937_RS17965 at 4101.815 kb on + strand, within DDA3937_RS17965 at 4101.815 kb on + strand, within DDA3937_RS17965 at 4101.815 kb on + strand, within DDA3937_RS17965 at 4101.816 kb on - strand, within DDA3937_RS17965 at 4101.816 kb on - strand, within DDA3937_RS17965 at 4101.893 kb on + strand, within DDA3937_RS17965 at 4101.894 kb on - strand, within DDA3937_RS17965 at 4101.903 kb on - strand, within DDA3937_RS17965 at 4101.903 kb on - strand, within DDA3937_RS17965 at 4101.903 kb on - strand, within DDA3937_RS17965 at 4101.957 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.977 kb on + strand, within DDA3937_RS17965 at 4101.978 kb on - strand, within DDA3937_RS17965 at 4101.978 kb on - strand, within DDA3937_RS17965 at 4101.978 kb on - strand, within DDA3937_RS17965 at 4101.978 kb on - strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.012 kb on + strand, within DDA3937_RS17965 at 4102.013 kb on - strand, within DDA3937_RS17965 at 4102.013 kb on - strand, within DDA3937_RS17965 at 4102.013 kb on - strand, within DDA3937_RS17965 at 4102.125 kb on + strand, within DDA3937_RS17965 at 4102.128 kb on + strand, within DDA3937_RS17965 at 4102.146 kb on + strand, within DDA3937_RS17965 at 4102.201 kb on + strand, within DDA3937_RS17965 at 4102.201 kb on + strand, within DDA3937_RS17965 at 4102.202 kb on - strand, within DDA3937_RS17965 at 4102.202 kb on - strand, within DDA3937_RS17965 at 4102.362 kb on + strand at 4102.381 kb on + strand at 4102.382 kb on - strand at 4102.392 kb on + strand at 4102.393 kb on - strand at 4102.393 kb on - strand at 4102.393 kb on - strand at 4102.451 kb on + strand at 4102.468 kb on - strand at 4102.468 kb on - strand at 4102.468 kb on - strand at 4102.468 kb on - strand at 4102.468 kb on - strand at 4102.521 kb on + strand, within DDA3937_RS17970 at 4102.521 kb on + strand, within DDA3937_RS17970 at 4102.521 kb on + strand, within DDA3937_RS17970 at 4102.522 kb on - strand, within DDA3937_RS17970 at 4102.522 kb on - strand, within DDA3937_RS17970 at 4102.522 kb on - strand, within DDA3937_RS17970 at 4102.522 kb on - strand, within DDA3937_RS17970 at 4102.588 kb on + strand, within DDA3937_RS17970 at 4102.588 kb on + strand, within DDA3937_RS17970 at 4102.714 kb on + strand, within DDA3937_RS17970 at 4102.714 kb on + strand, within DDA3937_RS17970 at 4102.714 kb on + strand, within DDA3937_RS17970 at 4102.714 kb on + strand, within DDA3937_RS17970 at 4102.715 kb on - strand, within DDA3937_RS17970 at 4102.715 kb on - strand, within DDA3937_RS17970 at 4102.818 kb on + strand, within DDA3937_RS17970 at 4102.897 kb on + strand, within DDA3937_RS17970 at 4102.897 kb on + strand, within DDA3937_RS17970 at 4102.898 kb on - strand, within DDA3937_RS17970 at 4102.918 kb on + strand, within DDA3937_RS17970 at 4102.919 kb on - strand, within DDA3937_RS17970 at 4102.919 kb on - strand, within DDA3937_RS17970 at 4102.928 kb on - strand, within DDA3937_RS17970 at 4102.928 kb on - strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.950 kb on + strand, within DDA3937_RS17970 at 4102.951 kb on - strand, within DDA3937_RS17970 at 4103.056 kb on + strand, within DDA3937_RS17970 at 4103.056 kb on + strand, within DDA3937_RS17970 at 4103.056 kb on + strand, within DDA3937_RS17970 at 4103.077 kb on + strand, within DDA3937_RS17970 at 4103.077 kb on + strand, within DDA3937_RS17970 at 4103.077 kb on + strand, within DDA3937_RS17970 at 4103.078 kb on - strand, within DDA3937_RS17970 at 4103.120 kb on - strand, within DDA3937_RS17970 at 4103.132 kb on - strand, within DDA3937_RS17970 at 4103.132 kb on - strand, within DDA3937_RS17970 at 4103.140 kb on + strand, within DDA3937_RS17970 at 4103.141 kb on - strand, within DDA3937_RS17970 at 4103.141 kb on - strand, within DDA3937_RS17970 at 4103.144 kb on + strand, within DDA3937_RS17970 at 4103.144 kb on + strand, within DDA3937_RS17970 at 4103.144 kb on + strand, within DDA3937_RS17970 at 4103.145 kb on - strand, within DDA3937_RS17970 at 4103.145 kb on - strand, within DDA3937_RS17970 at 4103.145 kb on - strand, within DDA3937_RS17970 at 4103.152 kb on + strand, within DDA3937_RS17970 at 4103.152 kb on + strand, within DDA3937_RS17970 at 4103.183 kb on + strand, within DDA3937_RS17970 at 4103.324 kb on + strand, within DDA3937_RS17970 at 4103.325 kb on - strand, within DDA3937_RS17970 at 4103.347 kb on - strand, within DDA3937_RS17970 at 4103.347 kb on - strand, within DDA3937_RS17970
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,100,137 + -0.8 4,100,137 + -0.5 4,100,137 + -0.7 4,100,137 + -0.0 4,100,137 + +0.2 4,100,137 + +0.5 4,100,137 + +0.3 4,100,137 + +0.2 4,100,137 + -0.4 4,100,137 + +0.8 4,100,137 + -0.4 4,100,137 + +0.2 4,100,138 - -0.0 4,100,138 - -0.0 4,100,138 - -1.3 4,100,138 - -0.4 4,100,138 - +0.5 4,100,138 - -0.3 4,100,138 - +0.1 4,100,138 - -0.4 4,100,139 + +0.5 4,100,139 + +0.1 4,100,139 + +0.9 4,100,139 + -0.4 4,100,139 + +0.1 4,100,140 - -1.0 4,100,140 - +1.1 4,100,140 - +0.4 4,100,196 + -0.4 4,100,196 + -0.8 4,100,197 - -0.1 4,100,197 - +3.1 4,100,197 - +1.4 4,100,200 + -1.1 4,100,201 - -0.1 4,100,226 + -2.4 4,100,227 - -0.4 4,100,227 - -1.8 4,100,488 - -0.7 4,100,488 - -0.5 4,100,488 - -0.2 4,100,549 - DDA3937_RS17960 0.19 -1.3 4,100,557 + DDA3937_RS17960 0.21 -1.3 4,100,557 + DDA3937_RS17960 0.21 -0.6 4,100,558 - DDA3937_RS17960 0.21 -1.3 4,100,607 + DDA3937_RS17960 0.32 -0.4 4,100,607 + DDA3937_RS17960 0.32 -0.3 4,100,638 - DDA3937_RS17960 0.39 -0.1 4,100,701 + DDA3937_RS17960 0.53 +0.4 4,100,701 + DDA3937_RS17960 0.53 -0.9 4,100,701 + DDA3937_RS17960 0.53 +0.4 4,100,702 - DDA3937_RS17960 0.54 +0.4 4,100,778 + DDA3937_RS17960 0.71 -0.6 4,100,779 - DDA3937_RS17960 0.71 +0.9 4,100,853 + DDA3937_RS17960 0.88 -1.6 4,100,853 + DDA3937_RS17960 0.88 +0.7 4,100,854 - DDA3937_RS17960 0.88 -0.5 4,100,912 + -1.6 4,100,912 + +0.6 4,100,913 - +0.2 4,100,913 - -0.3 4,100,930 - -1.4 4,100,947 + -0.4 4,100,947 + +0.4 4,100,947 + -0.1 4,100,947 + -0.4 4,100,947 + -2.1 4,100,948 - -0.1 4,100,948 - -0.3 4,100,948 - +0.3 4,101,113 + DDA3937_RS17965 0.14 -0.6 4,101,113 + DDA3937_RS17965 0.14 -1.0 4,101,113 + DDA3937_RS17965 0.14 -0.2 4,101,114 - DDA3937_RS17965 0.14 -0.8 4,101,114 - DDA3937_RS17965 0.14 +0.4 4,101,114 - DDA3937_RS17965 0.14 -0.9 4,101,114 - DDA3937_RS17965 0.14 +4.2 4,101,147 + DDA3937_RS17965 0.16 +1.3 4,101,169 + DDA3937_RS17965 0.18 -0.0 4,101,294 - DDA3937_RS17965 0.26 +0.4 4,101,294 - DDA3937_RS17965 0.26 -0.4 4,101,444 + DDA3937_RS17965 0.37 -0.3 4,101,444 + DDA3937_RS17965 0.37 -0.7 4,101,444 + DDA3937_RS17965 0.37 -0.1 4,101,444 + DDA3937_RS17965 0.37 -0.2 4,101,445 - DDA3937_RS17965 0.37 +0.6 4,101,445 - DDA3937_RS17965 0.37 -0.3 4,101,445 - DDA3937_RS17965 0.37 -0.2 4,101,496 + DDA3937_RS17965 0.40 -0.8 4,101,496 + DDA3937_RS17965 0.40 +0.3 4,101,496 + DDA3937_RS17965 0.40 +0.8 4,101,497 - DDA3937_RS17965 0.40 +1.9 4,101,497 - DDA3937_RS17965 0.40 +0.9 4,101,497 - DDA3937_RS17965 0.40 -0.3 4,101,497 - DDA3937_RS17965 0.40 +0.6 4,101,633 - DDA3937_RS17965 0.50 +1.3 4,101,648 + DDA3937_RS17965 0.51 -0.4 4,101,648 + DDA3937_RS17965 0.51 -0.9 4,101,648 + DDA3937_RS17965 0.51 +0.5 4,101,649 - DDA3937_RS17965 0.51 -0.0 4,101,649 - DDA3937_RS17965 0.51 +0.7 4,101,687 - DDA3937_RS17965 0.53 +0.3 4,101,687 - DDA3937_RS17965 0.53 -1.5 4,101,815 + DDA3937_RS17965 0.62 -1.1 4,101,815 + DDA3937_RS17965 0.62 -0.4 4,101,815 + DDA3937_RS17965 0.62 -0.4 4,101,816 - DDA3937_RS17965 0.62 -0.2 4,101,816 - DDA3937_RS17965 0.62 -0.3 4,101,893 + DDA3937_RS17965 0.67 -0.2 4,101,894 - DDA3937_RS17965 0.68 -2.2 4,101,903 - DDA3937_RS17965 0.68 -0.9 4,101,903 - DDA3937_RS17965 0.68 -0.9 4,101,903 - DDA3937_RS17965 0.68 +0.1 4,101,957 + DDA3937_RS17965 0.72 +0.3 4,101,977 + DDA3937_RS17965 0.73 -2.3 4,101,977 + DDA3937_RS17965 0.73 -0.3 4,101,977 + DDA3937_RS17965 0.73 +1.0 4,101,977 + DDA3937_RS17965 0.73 -1.9 4,101,977 + DDA3937_RS17965 0.73 -1.1 4,101,977 + DDA3937_RS17965 0.73 -2.1 4,101,977 + DDA3937_RS17965 0.73 -1.5 4,101,977 + DDA3937_RS17965 0.73 -0.6 4,101,977 + DDA3937_RS17965 0.73 +0.6 4,101,978 - DDA3937_RS17965 0.73 -0.3 4,101,978 - DDA3937_RS17965 0.73 -0.6 4,101,978 - DDA3937_RS17965 0.73 +0.5 4,101,978 - DDA3937_RS17965 0.73 -0.2 4,102,012 + DDA3937_RS17965 0.76 +1.8 4,102,012 + DDA3937_RS17965 0.76 -1.8 4,102,012 + DDA3937_RS17965 0.76 +0.6 4,102,012 + DDA3937_RS17965 0.76 +0.7 4,102,012 + DDA3937_RS17965 0.76 +0.7 4,102,012 + DDA3937_RS17965 0.76 -0.7 4,102,012 + DDA3937_RS17965 0.76 +0.2 4,102,013 - DDA3937_RS17965 0.76 +0.5 4,102,013 - DDA3937_RS17965 0.76 +0.6 4,102,013 - DDA3937_RS17965 0.76 -0.8 4,102,125 + DDA3937_RS17965 0.83 -1.4 4,102,128 + DDA3937_RS17965 0.84 -0.8 4,102,146 + DDA3937_RS17965 0.85 +0.6 4,102,201 + DDA3937_RS17965 0.89 +0.0 4,102,201 + DDA3937_RS17965 0.89 -0.4 4,102,202 - DDA3937_RS17965 0.89 -0.9 4,102,202 - DDA3937_RS17965 0.89 +0.5 4,102,362 + +0.6 4,102,381 + +0.1 4,102,382 - -1.0 4,102,392 + -0.9 4,102,393 - -0.9 4,102,393 - -0.8 4,102,393 - -1.5 4,102,451 + -0.1 4,102,468 - +0.3 4,102,468 - +0.8 4,102,468 - +0.4 4,102,468 - +0.1 4,102,468 - +0.0 4,102,521 + DDA3937_RS17970 0.12 -2.1 4,102,521 + DDA3937_RS17970 0.12 +1.0 4,102,521 + DDA3937_RS17970 0.12 -1.0 4,102,522 - DDA3937_RS17970 0.12 -0.7 4,102,522 - DDA3937_RS17970 0.12 -0.4 4,102,522 - DDA3937_RS17970 0.12 +0.2 4,102,522 - DDA3937_RS17970 0.12 +0.1 4,102,588 + DDA3937_RS17970 0.18 -0.1 4,102,588 + DDA3937_RS17970 0.18 -1.6 4,102,714 + DDA3937_RS17970 0.28 -1.7 4,102,714 + DDA3937_RS17970 0.28 -0.8 4,102,714 + DDA3937_RS17970 0.28 -0.0 4,102,714 + DDA3937_RS17970 0.28 -0.0 4,102,715 - DDA3937_RS17970 0.28 -0.8 4,102,715 - DDA3937_RS17970 0.28 -0.7 4,102,818 + DDA3937_RS17970 0.37 -0.3 4,102,897 + DDA3937_RS17970 0.43 -0.2 4,102,897 + DDA3937_RS17970 0.43 -0.8 4,102,898 - DDA3937_RS17970 0.43 -0.3 4,102,918 + DDA3937_RS17970 0.45 +0.6 4,102,919 - DDA3937_RS17970 0.45 +1.9 4,102,919 - DDA3937_RS17970 0.45 -2.1 4,102,928 - DDA3937_RS17970 0.46 -1.1 4,102,928 - DDA3937_RS17970 0.46 -0.1 4,102,950 + DDA3937_RS17970 0.48 -0.4 4,102,950 + DDA3937_RS17970 0.48 -0.8 4,102,950 + DDA3937_RS17970 0.48 -0.3 4,102,950 + DDA3937_RS17970 0.48 -0.4 4,102,950 + DDA3937_RS17970 0.48 -1.2 4,102,950 + DDA3937_RS17970 0.48 -0.1 4,102,950 + DDA3937_RS17970 0.48 +1.2 4,102,950 + DDA3937_RS17970 0.48 -0.4 4,102,951 - DDA3937_RS17970 0.48 -0.8 4,103,056 + DDA3937_RS17970 0.57 +0.5 4,103,056 + DDA3937_RS17970 0.57 -0.1 4,103,056 + DDA3937_RS17970 0.57 -0.1 4,103,077 + DDA3937_RS17970 0.58 -0.7 4,103,077 + DDA3937_RS17970 0.58 -2.3 4,103,077 + DDA3937_RS17970 0.58 -1.8 4,103,078 - DDA3937_RS17970 0.58 -1.6 4,103,120 - DDA3937_RS17970 0.62 +1.2 4,103,132 - DDA3937_RS17970 0.63 -0.4 4,103,132 - DDA3937_RS17970 0.63 +0.2 4,103,140 + DDA3937_RS17970 0.64 +1.0 4,103,141 - DDA3937_RS17970 0.64 -0.3 4,103,141 - DDA3937_RS17970 0.64 -0.2 4,103,144 + DDA3937_RS17970 0.64 -0.6 4,103,144 + DDA3937_RS17970 0.64 +1.4 4,103,144 + DDA3937_RS17970 0.64 +0.2 4,103,145 - DDA3937_RS17970 0.64 -0.8 4,103,145 - DDA3937_RS17970 0.64 -1.7 4,103,145 - DDA3937_RS17970 0.64 +0.2 4,103,152 + DDA3937_RS17970 0.65 +0.9 4,103,152 + DDA3937_RS17970 0.65 +0.9 4,103,183 + DDA3937_RS17970 0.67 +2.7 4,103,324 + DDA3937_RS17970 0.79 +0.1 4,103,325 - DDA3937_RS17970 0.79 -0.2 4,103,347 - DDA3937_RS17970 0.81 -1.0 4,103,347 - DDA3937_RS17970 0.81 +1.8
Or see this region's nucleotide sequence