Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,962,504	+		DDA3937_RS17410	0.51	+0.0
3,962,504	+		DDA3937_RS17410	0.51	-1.3
3,962,504	+		DDA3937_RS17410	0.51	+0.4
3,962,504	+		DDA3937_RS17410	0.51	-0.5
3,962,504	+		DDA3937_RS17410	0.51	-0.2
3,962,504	+		DDA3937_RS17410	0.51	-2.1
3,962,504	+		DDA3937_RS17410	0.51	+0.2
3,962,504	+		DDA3937_RS17410	0.51	-0.4
3,962,504	+		DDA3937_RS17410	0.51	-1.4
3,962,504	+		DDA3937_RS17410	0.51	-0.3
3,962,504	+		DDA3937_RS17410	0.51	-0.2
3,962,505	-		DDA3937_RS17410	0.51	+0.2
3,962,505	-		DDA3937_RS17410	0.51	-0.3
3,962,505	-		DDA3937_RS17410	0.51	-0.0
3,962,505	-		DDA3937_RS17410	0.51	-0.4
3,962,522	+		DDA3937_RS17410	0.52	+0.4
3,962,522	+		DDA3937_RS17410	0.52	-0.3
3,962,522	+		DDA3937_RS17410	0.52	+0.9
3,962,523	-		DDA3937_RS17410	0.52	-0.3
3,962,523	-		DDA3937_RS17410	0.52	+0.4
3,962,523	-		DDA3937_RS17410	0.52	-0.1
3,962,523	-		DDA3937_RS17410	0.52	-0.2
3,962,523	-		DDA3937_RS17410	0.52	-0.8
3,962,523	-		DDA3937_RS17410	0.52	+0.2
3,962,523	-		DDA3937_RS17410	0.52	-2.0
3,962,523	-		DDA3937_RS17410	0.52	-0.3
3,962,547	+		DDA3937_RS17410	0.54	-0.8
3,962,548	-		DDA3937_RS17410	0.54	-0.3
3,962,548	-		DDA3937_RS17410	0.54	+1.2
3,962,678	+		DDA3937_RS17410	0.64	+1.6
3,962,790	+		DDA3937_RS17410	0.72	-0.8
3,962,790	+		DDA3937_RS17410	0.72	+0.1
3,962,931	-		DDA3937_RS17410	0.82	+0.6
3,962,931	-		DDA3937_RS17410	0.82	-0.8
3,962,931	-		DDA3937_RS17410	0.82	+0.5
3,962,934	+		DDA3937_RS17410	0.83	+0.3
3,962,934	+		DDA3937_RS17410	0.83	+0.1
3,962,934	+		DDA3937_RS17410	0.83	-0.7
3,962,934	+		DDA3937_RS17410	0.83	-0.0
3,962,935	-		DDA3937_RS17410	0.83	-0.1
3,962,935	-		DDA3937_RS17410	0.83	-2.4
3,962,947	-		DDA3937_RS17410	0.84	-0.7
3,963,018	+		DDA3937_RS17410	0.89	-0.5
3,963,018	+		DDA3937_RS17410	0.89	+0.4
3,963,019	-		DDA3937_RS17410	0.89	-0.0
3,963,098	+				-2.0
3,963,098	+				-0.7
3,963,098	+				-0.1
3,963,098	+				-0.9
3,963,098	+				+0.5
3,963,099	-				-0.3
3,963,099	-				+0.2
3,963,099	-				+0.5
3,963,099	-				-0.3
3,963,133	+				+0.7
3,963,310	+				-0.6
3,963,343	+				+0.6
3,963,357	+				-0.2
3,963,435	+		DDA3937_RS17415	0.10	+1.1
3,963,436	-		DDA3937_RS17415	0.11	-0.8
3,963,623	-		DDA3937_RS17415	0.68	+0.6
3,963,623	-		DDA3937_RS17415	0.68	-0.0
3,963,628	-		DDA3937_RS17415	0.69	-0.2
3,963,628	-		DDA3937_RS17415	0.69	+0.7
3,963,628	-		DDA3937_RS17415	0.69	-0.5
3,963,660	+		DDA3937_RS17415	0.79	-0.5
3,963,660	+		DDA3937_RS17415	0.79	+3.4
3,963,661	-		DDA3937_RS17415	0.80	+0.3
3,963,661	-		DDA3937_RS17415	0.80	-0.8
3,963,661	-		DDA3937_RS17415	0.80	+0.6
3,963,661	-		DDA3937_RS17415	0.80	+0.3
3,963,687	+		DDA3937_RS17415	0.87	-1.7
3,963,750	+				-0.2
3,963,750	+				+0.6
3,963,751	-				-1.8
3,963,788	+				+0.5
3,963,788	+				+0.0
3,963,788	+				-0.1
3,963,788	+				-0.8
3,963,788	+				-3.4
3,963,788	+				-1.6
3,963,788	+				-0.3
3,963,789	-				+1.4
3,963,789	-				+0.8
3,963,789	-				-0.1
3,963,791	+				+0.3
3,963,791	+				-0.6
3,963,791	+				+0.3
3,963,792	-				-0.8
3,963,792	-				-0.0
3,963,792	-				-0.9
3,963,809	-				+0.7
3,963,908	-				-1.2
3,964,072	-		DDA3937_RS17420	0.21	+0.3
3,964,213	+		DDA3937_RS17420	0.35	-0.8
3,964,213	+		DDA3937_RS17420	0.35	+1.1
3,964,213	+		DDA3937_RS17420	0.35	-0.8
3,964,213	+		DDA3937_RS17420	0.35	-0.3
3,964,213	+		DDA3937_RS17420	0.35	+0.6
3,964,213	+		DDA3937_RS17420	0.35	+0.8
3,964,213	+		DDA3937_RS17420	0.35	-0.9
3,964,213	+		DDA3937_RS17420	0.35	-0.7
3,964,213	+		DDA3937_RS17420	0.35	-0.0
3,964,214	-		DDA3937_RS17420	0.36	+0.4
3,964,214	-		DDA3937_RS17420	0.36	+0.8
3,964,214	-		DDA3937_RS17420	0.36	-1.0
3,964,214	-		DDA3937_RS17420	0.36	-0.6
3,964,214	-		DDA3937_RS17420	0.36	-1.6
3,964,214	-		DDA3937_RS17420	0.36	-0.8
3,964,214	-		DDA3937_RS17420	0.36	-0.9
3,964,218	+		DDA3937_RS17420	0.36	-0.8
3,964,218	+		DDA3937_RS17420	0.36	-0.2
3,964,219	-		DDA3937_RS17420	0.36	+0.3
3,964,219	-		DDA3937_RS17420	0.36	-0.6
3,964,269	-		DDA3937_RS17420	0.41	-0.6
3,964,269	-		DDA3937_RS17420	0.41	-0.5
3,964,269	-		DDA3937_RS17420	0.41	-0.0
3,964,269	-		DDA3937_RS17420	0.41	-0.6
3,964,269	-		DDA3937_RS17420	0.41	+0.0
3,964,269	-		DDA3937_RS17420	0.41	-1.4
3,964,269	-		DDA3937_RS17420	0.41	-3.2
3,964,366	-		DDA3937_RS17420	0.51	-0.3
3,964,475	+		DDA3937_RS17420	0.61	-0.1
3,964,475	+		DDA3937_RS17420	0.61	-0.5
3,964,476	-		DDA3937_RS17420	0.61	+0.3
3,964,476	-		DDA3937_RS17420	0.61	-0.8
3,964,482	+		DDA3937_RS17420	0.62	+0.2
3,964,482	+		DDA3937_RS17420	0.62	-0.5
3,964,483	-		DDA3937_RS17420	0.62	+1.2
3,964,598	+		DDA3937_RS17420	0.73	+1.2
3,964,598	+		DDA3937_RS17420	0.73	+0.3
3,964,599	-		DDA3937_RS17420	0.74	+0.2
3,964,599	-		DDA3937_RS17420	0.74	-0.8
3,964,599	-		DDA3937_RS17420	0.74	-0.6
3,964,625	-		DDA3937_RS17420	0.76	-0.6
3,964,722	+		DDA3937_RS17420	0.86	-0.4
3,964,722	+		DDA3937_RS17420	0.86	+0.6
3,964,723	-		DDA3937_RS17420	0.86	-0.2
3,964,723	-		DDA3937_RS17420	0.86	-2.3
3,964,723	-		DDA3937_RS17420	0.86	-0.2
3,964,723	-		DDA3937_RS17420	0.86	-1.7