Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15660

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,589,427	+		DDA3937_RS15655	0.84	-2.0
3,589,427	+				-1.0
3,589,427	+		DDA3937_RS15655	0.84	-2.2
3,589,427	+		DDA3937_RS15655	0.84	-3.6
3,589,427	+		DDA3937_RS15655	0.84	-2.3
3,589,427	+		DDA3937_RS15655	0.84	-2.9
3,589,427	+		DDA3937_RS15655	0.84	-2.0
3,589,427	+		DDA3937_RS15655	0.84	-2.4
3,589,427	+		DDA3937_RS15655	0.84	-2.0
3,589,427	+		DDA3937_RS15655	0.84	-1.3
3,589,428	-		DDA3937_RS15655	0.84	-2.8
3,589,428	-		DDA3937_RS15655	0.84	-2.1
3,589,428	-		DDA3937_RS15655	0.84	-1.3
3,589,428	-		DDA3937_RS15655	0.84	-2.5
3,589,428	-		DDA3937_RS15655	0.84	-0.2
3,589,482	-		DDA3937_RS15655	0.86	-1.2
3,589,709	+				-2.2
3,589,710	-				-2.3
3,589,710	-				-1.7
3,589,710	-				-1.5
3,589,710	-				-3.2
3,589,710	-				-0.5
3,589,710	-				-1.0
3,589,710	-				-1.0
3,589,866	-				-2.3
3,589,937	+				-2.1
3,589,938	-				-2.4
3,589,938	-				-4.0
3,589,938	-				-1.3
3,589,938	-				-2.7
3,589,938	-				-1.2
3,589,946	+				-0.9
3,589,946	+				-1.5
3,589,947	-				+0.0
3,589,970	+				-3.0
3,589,996	-				-1.8
3,590,036	-				-3.6
3,590,049	-				-0.8
3,590,115	+				-1.0
3,590,116	-				-0.8
3,590,118	+				-3.0
3,590,118	+				-2.8
3,590,119	-				-0.3
3,590,119	-				-2.4
3,590,119	-				-0.7
3,590,120	+				-2.1
3,590,120	+				+0.0
3,590,120	+				-1.5
3,590,121	-				-0.6
3,590,121	-				+0.0
3,590,121	-				+0.8
3,590,121	-				+0.8
3,590,195	+				+0.1
3,590,196	-				+0.2
3,590,196	-				-0.5
3,590,204	+				+1.3
3,590,204	+				-0.6
3,590,204	+				-2.4
3,590,204	+				-0.2
3,590,204	+				+1.3
3,590,204	+				-2.4
3,590,205	-				-1.5
3,590,205	-				-0.5
3,590,207	+				-0.7
3,590,208	-				+0.2
3,590,208	-				-0.7
3,590,267	+				+0.6
3,590,337	+				+0.0
3,590,337	+				+0.9
3,590,342	+				+1.3
3,590,395	+				-0.8
3,590,395	+				-0.8
3,590,396	-				+0.7
3,590,486	+		DDA3937_RS15660	0.11	-2.3
3,590,486	+		DDA3937_RS15660	0.11	+1.6
3,590,486	+		DDA3937_RS15660	0.11	-0.2
3,590,486	+		DDA3937_RS15660	0.11	+0.2
3,590,486	+		DDA3937_RS15660	0.11	-0.5
3,590,486	+		DDA3937_RS15660	0.11	-1.1
3,590,486	+		DDA3937_RS15660	0.11	+0.2
3,590,486	+		DDA3937_RS15660	0.11	+0.5
3,590,653	+		DDA3937_RS15660	0.23	+0.2
3,590,653	+		DDA3937_RS15660	0.23	-1.4
3,590,693	+		DDA3937_RS15660	0.26	-0.3
3,590,694	-		DDA3937_RS15660	0.26	+1.4
3,590,694	-		DDA3937_RS15660	0.26	+0.0
3,590,696	+		DDA3937_RS15660	0.26	-0.7
3,590,720	+		DDA3937_RS15660	0.27	+0.4
3,590,720	+		DDA3937_RS15660	0.27	-1.5
3,590,720	+		DDA3937_RS15660	0.27	+0.3
3,590,760	+		DDA3937_RS15660	0.30	-1.8
3,590,760	+		DDA3937_RS15660	0.30	+1.3
3,590,761	-		DDA3937_RS15660	0.30	+0.5
3,590,761	-		DDA3937_RS15660	0.30	+0.5
3,590,778	+		DDA3937_RS15660	0.31	-0.5
3,590,779	-		DDA3937_RS15660	0.31	-0.5
3,590,828	-		DDA3937_RS15660	0.35	-0.1
3,590,880	+		DDA3937_RS15660	0.38	+0.0
3,590,881	-		DDA3937_RS15660	0.38	+0.1
3,590,881	-		DDA3937_RS15660	0.38	-2.5
3,590,883	+		DDA3937_RS15660	0.39	-0.5
3,590,883	+		DDA3937_RS15660	0.39	-0.3
3,590,883	+		DDA3937_RS15660	0.39	+2.6
3,590,883	+		DDA3937_RS15660	0.39	-1.4
3,590,912	+		DDA3937_RS15660	0.41	+1.5
3,590,912	+		DDA3937_RS15660	0.41	+0.8
3,590,913	-		DDA3937_RS15660	0.41	+2.4
3,590,954	-		DDA3937_RS15660	0.43	+0.5
3,590,954	-		DDA3937_RS15660	0.43	+0.6
3,591,011	+		DDA3937_RS15660	0.47	+2.2
3,591,011	+		DDA3937_RS15660	0.47	-0.2
3,591,011	+		DDA3937_RS15660	0.47	+0.1
3,591,011	+		DDA3937_RS15660	0.47	+0.0
3,591,011	+		DDA3937_RS15660	0.47	+0.9
3,591,011	+		DDA3937_RS15660	0.47	-0.5
3,591,011	+		DDA3937_RS15660	0.47	+0.9
3,591,012	-		DDA3937_RS15660	0.47	-1.0
3,591,012	-		DDA3937_RS15660	0.47	-0.3
3,591,012	-		DDA3937_RS15660	0.47	+0.2
3,591,012	-		DDA3937_RS15660	0.47	-2.4
3,591,012	-		DDA3937_RS15660	0.47	-0.1
3,591,012	-		DDA3937_RS15660	0.47	-1.3
3,591,012	-		DDA3937_RS15660	0.47	+0.8
3,591,012	-		DDA3937_RS15660	0.47	-1.0
3,591,013	+		DDA3937_RS15660	0.47	-1.0
3,591,014	-		DDA3937_RS15660	0.48	-0.8
3,591,014	-		DDA3937_RS15660	0.48	-2.4
3,591,035	-		DDA3937_RS15660	0.49	+2.6
3,591,110	+		DDA3937_RS15660	0.54	-0.8
3,591,111	-		DDA3937_RS15660	0.54	-1.0
3,591,111	-		DDA3937_RS15660	0.54	-0.3
3,591,137	+		DDA3937_RS15660	0.56	+1.2
3,591,138	-		DDA3937_RS15660	0.56	-1.0
3,591,138	-		DDA3937_RS15660	0.56	-1.0
3,591,138	-		DDA3937_RS15660	0.56	+0.2
3,591,138	-		DDA3937_RS15660	0.56	-0.4
3,591,146	-		DDA3937_RS15660	0.57	+0.0
3,591,146	-		DDA3937_RS15660	0.57	+3.0
3,591,176	-				+1.0
3,591,176	-		DDA3937_RS15660	0.59	-0.3
3,591,467	+		DDA3937_RS15660	0.79	+0.6
3,591,468	-		DDA3937_RS15660	0.79	+3.5
3,591,479	+		DDA3937_RS15660	0.79	+0.3
3,591,487	+		DDA3937_RS15660	0.80	+0.0
3,591,487	+		DDA3937_RS15660	0.80	+1.2
3,591,488	-		DDA3937_RS15660	0.80	+1.4
3,591,535	+		DDA3937_RS15660	0.83	-0.2
3,591,555	+		DDA3937_RS15660	0.85	+0.6
3,591,556	-		DDA3937_RS15660	0.85	-0.1
3,591,556	-		DDA3937_RS15660	0.85	+1.4
3,591,556	-		DDA3937_RS15660	0.85	+0.5
3,591,584	+		DDA3937_RS15660	0.87	-1.7
3,591,584	+		DDA3937_RS15660	0.87	-0.3
3,591,585	-		DDA3937_RS15660	0.87	-1.1
3,591,585	-		DDA3937_RS15660	0.87	+0.6
3,591,587	+		DDA3937_RS15660	0.87	-2.1
3,591,629	+		DDA3937_RS15660	0.90	-1.3
3,591,629	+		DDA3937_RS15660	0.90	+0.0
3,591,629	+		DDA3937_RS15660	0.90	+0.0
3,591,629	+		DDA3937_RS15660	0.90	-0.8
3,591,629	+		DDA3937_RS15660	0.90	+0.9
3,591,630	-		DDA3937_RS15660	0.90	+0.2
3,591,630	-				-0.5
3,591,630	-		DDA3937_RS15660	0.90	-1.1
3,591,630	-		DDA3937_RS15660	0.90	+0.5
3,591,630	-				-0.3
3,591,635	+				-0.5
3,591,635	+				+0.0
3,591,635	+				+0.9
3,591,635	+				+0.5
3,591,636	-				+4.1
3,591,636	-				-1.2
3,591,636	-				-1.2
3,591,636	-				+0.2
3,591,657	-				+1.7
3,591,657	-				+0.4
3,591,658	+				+1.0
3,591,658	+				+0.2
3,591,659	-				-1.1
3,591,659	-				-1.0
3,591,659	-				+1.1
3,591,659	-				-0.2
3,591,659	-				+0.8
3,591,677	+				+2.1
3,591,678	-				+0.3
3,591,681	+				-1.5
3,591,731	+				+0.3
3,591,838	+				-1.0
3,592,287	-				+0.9
3,592,327	+				-0.1
3,592,327	+				+0.5
3,592,328	-				-0.1
3,592,328	-				+0.5
3,592,329	+				+0.0
3,592,329	+				-1.4
3,592,329	+				-0.5
3,592,329	+				-1.3
3,592,329	+				-0.2
3,592,329	+				+0.0
3,592,329	+				-0.9
3,592,329	+				+0.8
3,592,329	+				-1.0
3,592,329	+				-0.5
3,592,329	+				+0.7
3,592,329	+				-0.4
3,592,329	+				-0.5
3,592,329	+				+0.8
3,592,329	+				-1.2
3,592,330	-				-0.5
3,592,330	-				-0.8
3,592,330	-				-0.5
3,592,330	-				+2.0
3,592,330	-				-0.7
3,592,330	-				-0.7
3,592,330	-				-1.4
3,592,330	-				-0.4
3,592,330	-				+0.7
3,592,330	-				+1.7
3,592,330	-				-0.5
3,592,330	-				-1.4
3,592,330	-				-0.4
3,592,330	-				+0.2
3,592,330	-				-1.1
3,592,330	-				-1.1
3,592,449	+		DDA3937_RS15670	0.16	-0.7
3,592,449	+		DDA3937_RS15670	0.16	+0.2
3,592,450	-		DDA3937_RS15670	0.16	+1.0
3,592,578	-		DDA3937_RS15670	0.36	-0.1
3,592,578	-		DDA3937_RS15670	0.36	+2.2
3,592,665	+		DDA3937_RS15670	0.49	-0.5
3,592,665	+		DDA3937_RS15670	0.49	-0.5
3,592,665	+		DDA3937_RS15670	0.49	+0.4
3,592,665	+		DDA3937_RS15670	0.49	-0.1
3,592,666	-		DDA3937_RS15670	0.49	+2.5
3,592,666	-		DDA3937_RS15670	0.49	-1.6
3,592,688	+		DDA3937_RS15670	0.53	+0.6
3,592,739	+		DDA3937_RS15670	0.60	+0.7
3,592,739	+		DDA3937_RS15670	0.60	-1.3
3,592,739	+		DDA3937_RS15670	0.60	-0.1
3,592,739	+		DDA3937_RS15670	0.60	-0.8
3,592,739	+		DDA3937_RS15670	0.60	-2.1
3,592,739	+		DDA3937_RS15670	0.60	+0.8