Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15230

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,489,351	+		DDA3937_RS15220	0.85	-0.6
3,489,351	+		DDA3937_RS15220	0.85	-1.1
3,489,351	+		DDA3937_RS15220	0.85	+0.7
3,489,351	+		DDA3937_RS15220	0.85	+0.5
3,489,352	-		DDA3937_RS15220	0.85	-0.7
3,489,352	-		DDA3937_RS15220	0.85	-0.8
3,489,536	+				+0.4
3,489,536	+				-2.1
3,489,550	+				-0.6
3,489,550	+				-1.0
3,489,550	+				-1.0
3,489,550	+				+2.0
3,489,551	-				-1.6
3,489,551	-				-1.3
3,489,551	-				-0.3
3,489,695	+				-0.2
3,489,695	+				-0.2
3,489,695	+				-1.6
3,489,696	-				+0.3
3,489,700	+				-0.0
3,489,700	+				-0.8
3,489,741	+				-0.7
3,489,742	-				-1.6
3,489,758	+				+0.4
3,489,758	+				+0.5
3,489,800	+				+0.4
3,489,800	+				-0.1
3,489,806	+				+0.4
3,489,807	-				-0.4
3,489,820	+				+0.1
3,489,820	+				-2.2
3,489,821	-				-0.2
3,489,824	+				+0.8
3,489,824	+				+0.2
3,489,824	+				-0.0
3,489,825	-				-0.4
3,489,825	-				-0.5
3,489,825	-				-0.6
3,489,825	-				-0.8
3,489,904	+		DDA3937_RS15225	0.21	-0.6
3,489,905	-		DDA3937_RS15225	0.21	+4.0
3,489,908	+		DDA3937_RS15225	0.22	-0.6
3,489,908	+		DDA3937_RS15225	0.22	+1.0
3,489,909	-		DDA3937_RS15225	0.22	-1.2
3,489,909	-		DDA3937_RS15225	0.22	-1.0
3,489,909	-		DDA3937_RS15225	0.22	+0.4
3,490,314	+				+0.2
3,490,315	-				-1.3
3,490,315	-				-1.3
3,490,315	-				-0.8
3,490,315	-				+0.2
3,490,332	+				-1.0
3,490,332	+				-0.9
3,490,333	-				+1.7
3,490,333	-				-1.3
3,490,334	+				-0.6
3,490,479	-				-0.7
3,490,479	-				+0.6
3,490,479	-				-1.3
3,490,490	+				+0.4
3,490,490	+				-0.3
3,490,490	+				-2.5
3,490,490	+				-0.3
3,490,490	+				-1.8
3,490,536	+		DDA3937_RS15230	0.12	+0.2
3,490,537	-		DDA3937_RS15230	0.12	-0.6
3,490,553	-		DDA3937_RS15230	0.13	+0.5
3,490,553	-		DDA3937_RS15230	0.13	+0.6
3,490,589	+		DDA3937_RS15230	0.14	-0.8
3,490,590	-		DDA3937_RS15230	0.14	-0.0
3,490,656	+		DDA3937_RS15230	0.17	-0.8
3,490,656	+		DDA3937_RS15230	0.17	-3.1
3,490,656	+		DDA3937_RS15230	0.17	+1.8
3,490,656	+		DDA3937_RS15230	0.17	+0.9
3,490,657	-		DDA3937_RS15230	0.17	-0.7
3,490,693	-		DDA3937_RS15230	0.19	-0.1
3,490,731	+		DDA3937_RS15230	0.21	-0.4
3,490,731	+		DDA3937_RS15230	0.21	-1.2
3,490,732	-		DDA3937_RS15230	0.21	-0.4
3,490,732	-		DDA3937_RS15230	0.21	+0.4
3,490,821	+		DDA3937_RS15230	0.25	-1.0
3,490,821	+		DDA3937_RS15230	0.25	+0.8
3,490,998	+		DDA3937_RS15230	0.33	-0.2
3,491,001	+		DDA3937_RS15230	0.33	+0.3
3,491,002	-		DDA3937_RS15230	0.33	+1.1
3,491,002	-		DDA3937_RS15230	0.33	+1.0
3,491,002	-		DDA3937_RS15230	0.33	+0.5
3,491,002	-		DDA3937_RS15230	0.33	-1.3
3,491,045	+		DDA3937_RS15230	0.35	-1.9
3,491,053	-		DDA3937_RS15230	0.35	-0.9
3,491,080	-		DDA3937_RS15230	0.37	-0.0
3,491,080	-		DDA3937_RS15230	0.37	-0.2
3,491,172	+		DDA3937_RS15230	0.41	-2.1
3,491,173	-		DDA3937_RS15230	0.41	-0.4
3,491,173	-		DDA3937_RS15230	0.41	-0.3
3,491,281	+		DDA3937_RS15230	0.46	+1.0
3,491,314	+		DDA3937_RS15230	0.47	+0.7
3,491,314	+		DDA3937_RS15230	0.47	-0.5
3,491,315	-		DDA3937_RS15230	0.47	-1.6
3,491,315	-		DDA3937_RS15230	0.47	-0.8
3,491,322	-		DDA3937_RS15230	0.48	+2.0
3,491,351	+		DDA3937_RS15230	0.49	+0.3
3,491,439	-		DDA3937_RS15230	0.53	-0.4
3,491,485	+		DDA3937_RS15230	0.55	-0.2
3,491,573	+		DDA3937_RS15230	0.59	-0.9
3,491,574	-				+2.6
3,491,574	-		DDA3937_RS15230	0.59	-0.7
3,491,577	+		DDA3937_RS15230	0.59	+0.4
3,491,577	+		DDA3937_RS15230	0.59	-1.0
3,491,577	+		DDA3937_RS15230	0.59	-0.6
3,491,577	+		DDA3937_RS15230	0.59	+0.7
3,491,577	+		DDA3937_RS15230	0.59	-1.0
3,491,577	+		DDA3937_RS15230	0.59	-2.6
3,491,578	-		DDA3937_RS15230	0.59	-2.2
3,491,578	-		DDA3937_RS15230	0.59	-1.2
3,491,578	-		DDA3937_RS15230	0.59	+0.5
3,491,599	+		DDA3937_RS15230	0.60	+0.7
3,491,599	+		DDA3937_RS15230	0.60	+0.0
3,491,609	+		DDA3937_RS15230	0.61	+0.6
3,491,610	-		DDA3937_RS15230	0.61	-0.3
3,491,610	-		DDA3937_RS15230	0.61	-0.1
3,491,655	+		DDA3937_RS15230	0.63	-0.7
3,491,655	+				-0.0
3,491,655	+		DDA3937_RS15230	0.63	-0.1
3,491,655	+		DDA3937_RS15230	0.63	-1.0
3,491,655	+		DDA3937_RS15230	0.63	+1.0
3,491,655	+		DDA3937_RS15230	0.63	+0.2
3,491,656	-		DDA3937_RS15230	0.63	-2.3
3,491,656	-		DDA3937_RS15230	0.63	-1.0
3,491,656	-		DDA3937_RS15230	0.63	-0.8
3,491,656	-		DDA3937_RS15230	0.63	-0.6
3,491,657	+		DDA3937_RS15230	0.63	-1.2
3,491,708	-		DDA3937_RS15230	0.65	-1.1
3,491,736	+		DDA3937_RS15230	0.67	-2.5
3,491,736	+		DDA3937_RS15230	0.67	-0.7
3,491,736	+		DDA3937_RS15230	0.67	+0.7
3,491,737	-		DDA3937_RS15230	0.67	-0.6
3,491,831	+		DDA3937_RS15230	0.71	-0.9
3,491,924	+		DDA3937_RS15230	0.75	+0.6
3,491,924	+		DDA3937_RS15230	0.75	+0.4
3,491,924	+				-1.3
3,491,924	+		DDA3937_RS15230	0.75	-0.0
3,491,925	-		DDA3937_RS15230	0.75	+0.6
3,491,933	+		DDA3937_RS15230	0.76	-0.8
3,491,933	+		DDA3937_RS15230	0.76	-1.5
3,491,933	+		DDA3937_RS15230	0.76	-0.8
3,491,933	+		DDA3937_RS15230	0.76	+0.5
3,491,933	+		DDA3937_RS15230	0.76	-1.0
3,491,933	+		DDA3937_RS15230	0.76	-0.5
3,491,933	+		DDA3937_RS15230	0.76	+0.3
3,491,934	-		DDA3937_RS15230	0.76	-0.0
3,491,934	-		DDA3937_RS15230	0.76	-0.4
3,491,934	-		DDA3937_RS15230	0.76	-1.9
3,491,934	-		DDA3937_RS15230	0.76	+0.5
3,491,954	+		DDA3937_RS15230	0.76	-2.3
3,491,967	+		DDA3937_RS15230	0.77	+0.8
3,491,967	+		DDA3937_RS15230	0.77	-1.3
3,491,967	+		DDA3937_RS15230	0.77	-0.2
3,492,141	+		DDA3937_RS15230	0.85	-1.2
3,492,142	-		DDA3937_RS15230	0.85	-1.6
3,492,142	-		DDA3937_RS15230	0.85	-0.0
3,492,142	-		DDA3937_RS15230	0.85	-0.0
3,492,143	+		DDA3937_RS15230	0.85	-0.3
3,492,143	+		DDA3937_RS15230	0.85	-0.0
3,492,143	+		DDA3937_RS15230	0.85	-1.0
3,492,143	+		DDA3937_RS15230	0.85	+0.7
3,492,143	+		DDA3937_RS15230	0.85	-0.4
3,492,143	+		DDA3937_RS15230	0.85	-1.1
3,492,143	+		DDA3937_RS15230	0.85	+0.1
3,492,143	+		DDA3937_RS15230	0.85	-1.5
3,492,144	-		DDA3937_RS15230	0.85	-0.6
3,492,144	-		DDA3937_RS15230	0.85	+1.3
3,492,144	-		DDA3937_RS15230	0.85	-0.2
3,492,144	-		DDA3937_RS15230	0.85	+1.5
3,492,144	-		DDA3937_RS15230	0.85	-0.0
3,492,144	-		DDA3937_RS15230	0.85	-0.0
3,492,144	-		DDA3937_RS15230	0.85	+0.1
3,492,144	-		DDA3937_RS15230	0.85	-0.4
3,492,144	-		DDA3937_RS15230	0.85	-0.3
3,492,144	-		DDA3937_RS15230	0.85	+0.3
3,492,144	-		DDA3937_RS15230	0.85	-0.6
3,492,144	-		DDA3937_RS15230	0.85	+1.0
3,492,194	-		DDA3937_RS15230	0.87	-2.2
3,492,341	-				-0.5
3,492,353	+				+1.0
3,492,353	+				-0.1
3,492,354	-				+0.6
3,492,391	+				-1.1
3,492,468	+				+0.8
3,492,602	-		DDA3937_RS15235	0.21	-0.6
3,492,602	-				+0.4
3,492,639	+		DDA3937_RS15235	0.27	+2.6
3,492,640	-		DDA3937_RS15235	0.27	+1.4
3,492,640	-		DDA3937_RS15235	0.27	-0.8
3,492,640	-		DDA3937_RS15235	0.27	+1.9
3,492,676	+		DDA3937_RS15235	0.33	+0.3
3,492,677	-		DDA3937_RS15235	0.33	-2.2
3,492,677	-		DDA3937_RS15235	0.33	+0.2
3,492,677	-		DDA3937_RS15235	0.33	-1.0
3,492,683	-		DDA3937_RS15235	0.34	+0.6
3,492,852	+		DDA3937_RS15235	0.61	-1.1
3,492,853	-		DDA3937_RS15235	0.61	-0.3
3,492,853	-		DDA3937_RS15235	0.61	+1.6
3,492,853	-		DDA3937_RS15235	0.61	-1.0
3,492,856	-		DDA3937_RS15235	0.62	-0.6
3,492,856	-		DDA3937_RS15235	0.62	-0.0
3,492,856	-		DDA3937_RS15235	0.62	-0.9
3,492,856	-		DDA3937_RS15235	0.62	-0.2
3,492,886	+				+2.0
3,492,888	+		DDA3937_RS15235	0.67	-1.7
3,492,888	+		DDA3937_RS15235	0.67	-2.0
3,492,889	-		DDA3937_RS15235	0.67	+0.3
3,492,889	-		DDA3937_RS15235	0.67	-0.2
3,492,951	+		DDA3937_RS15235	0.77	+0.4
3,492,951	+		DDA3937_RS15235	0.77	-0.2
3,492,952	-		DDA3937_RS15235	0.77	-0.3
3,493,033	+		DDA3937_RS15235	0.90	-0.4
3,493,033	+		DDA3937_RS15235	0.90	-0.0
3,493,034	-				+0.3
3,493,111	-				-1.1
3,493,111	-				-0.6
3,493,132	-				-0.3
3,493,164	-				-0.0
3,493,202	+				+1.0
3,493,219	-				-0.5
3,493,226	-				-1.8
3,493,226	-				-0.3
3,493,280	+				+1.1
3,493,294	-				+0.4
3,493,307	-				-0.6
3,493,321	+				-1.0
3,493,421	+		DDA3937_RS15240	0.21	-0.6
3,493,421	+		DDA3937_RS15240	0.21	-0.3
3,493,422	-		DDA3937_RS15240	0.21	+0.2
3,493,422	-		DDA3937_RS15240	0.21	-0.6
3,493,467	+		DDA3937_RS15240	0.31	-1.7
3,493,467	+		DDA3937_RS15240	0.31	-0.9