Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15145

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,473,622	-		DDA3937_RS15140	0.40	-0.8
3,473,622	-		DDA3937_RS15140	0.40	-1.0
3,473,622	-		DDA3937_RS15140	0.40	-2.0
3,473,633	+		DDA3937_RS15140	0.41	+0.7
3,473,634	-		DDA3937_RS15140	0.41	+1.7
3,473,634	-		DDA3937_RS15140	0.41	-1.0
3,473,634	-		DDA3937_RS15140	0.41	+0.4
3,473,683	-		DDA3937_RS15140	0.44	+0.3
3,473,690	-		DDA3937_RS15140	0.45	-0.5
3,473,770	+		DDA3937_RS15140	0.49	+1.8
3,473,770	+		DDA3937_RS15140	0.49	+0.3
3,473,770	+		DDA3937_RS15140	0.49	-1.3
3,473,770	+		DDA3937_RS15140	0.49	-1.7
3,473,771	-		DDA3937_RS15140	0.49	+0.8
3,473,854	-		DDA3937_RS15140	0.54	+1.8
3,473,854	-		DDA3937_RS15140	0.54	+0.7
3,473,854	-		DDA3937_RS15140	0.54	+0.6
3,473,931	+		DDA3937_RS15140	0.59	+0.4
3,473,932	-		DDA3937_RS15140	0.59	-0.3
3,473,932	-		DDA3937_RS15140	0.59	-2.1
3,474,123	+		DDA3937_RS15140	0.71	-0.7
3,474,123	+		DDA3937_RS15140	0.71	-1.8
3,474,123	+		DDA3937_RS15140	0.71	-0.3
3,474,123	+		DDA3937_RS15140	0.71	+1.6
3,474,124	-		DDA3937_RS15140	0.71	+0.2
3,474,124	-		DDA3937_RS15140	0.71	-0.5
3,474,124	-		DDA3937_RS15140	0.71	-0.2
3,474,124	-		DDA3937_RS15140	0.71	+0.1
3,474,124	-		DDA3937_RS15140	0.71	+0.4
3,474,183	+		DDA3937_RS15140	0.74	-0.5
3,474,200	+		DDA3937_RS15140	0.75	-0.8
3,474,200	+		DDA3937_RS15140	0.75	+0.4
3,474,200	+		DDA3937_RS15140	0.75	-0.1
3,474,200	+		DDA3937_RS15140	0.75	-0.3
3,474,200	+		DDA3937_RS15140	0.75	-1.3
3,474,201	-		DDA3937_RS15140	0.76	+1.0
3,474,299	+		DDA3937_RS15140	0.81	-0.7
3,474,300	-		DDA3937_RS15140	0.82	-0.9
3,474,321	+		DDA3937_RS15140	0.83	-0.4
3,474,321	+		DDA3937_RS15140	0.83	+0.5
3,474,322	-		DDA3937_RS15140	0.83	+1.5
3,474,518	-				-0.9
3,474,546	+				-0.0
3,474,546	+				-0.8
3,474,680	+				-0.1
3,474,681	-				+0.0
3,474,681	-				-0.0
3,474,681	-				-0.1
3,474,686	+				-0.3
3,474,687	-				+0.2
3,474,687	-				-0.1
3,474,687	-				-1.9
3,474,687	-				-1.8
3,474,784	-				-0.4
3,474,801	-				+0.6
3,475,064	+		DDA3937_RS15145	0.22	+0.4
3,475,064	+		DDA3937_RS15145	0.22	+0.2
3,475,064	+		DDA3937_RS15145	0.22	-0.2
3,475,065	-		DDA3937_RS15145	0.22	-0.7
3,475,065	-		DDA3937_RS15145	0.22	+0.2
3,475,067	+		DDA3937_RS15145	0.22	+1.4
3,475,068	-		DDA3937_RS15145	0.22	-0.6
3,475,189	-		DDA3937_RS15145	0.27	-0.9
3,475,298	+		DDA3937_RS15145	0.32	+1.8
3,475,439	-		DDA3937_RS15145	0.39	-0.2
3,475,483	+		DDA3937_RS15145	0.41	-1.5
3,475,541	-		DDA3937_RS15145	0.44	+0.4
3,475,573	+		DDA3937_RS15145	0.45	+0.8
3,475,573	+		DDA3937_RS15145	0.45	-1.8
3,475,573	+		DDA3937_RS15145	0.45	-1.3
3,475,573	+		DDA3937_RS15145	0.45	+2.2
3,475,573	+		DDA3937_RS15145	0.45	-0.3
3,475,574	-		DDA3937_RS15145	0.45	+0.4
3,475,574	-		DDA3937_RS15145	0.45	-1.4
3,475,588	+		DDA3937_RS15145	0.46	+0.7
3,475,588	+		DDA3937_RS15145	0.46	+0.5
3,475,657	+		DDA3937_RS15145	0.49	+0.6
3,475,836	+		DDA3937_RS15145	0.57	-0.6
3,475,836	+		DDA3937_RS15145	0.57	+1.2
3,475,837	-		DDA3937_RS15145	0.57	+1.6
3,476,080	+		DDA3937_RS15145	0.69	+0.8
3,476,080	+		DDA3937_RS15145	0.69	+0.7
3,476,080	+		DDA3937_RS15145	0.69	+0.4
3,476,080	+		DDA3937_RS15145	0.69	+0.2
3,476,080	+		DDA3937_RS15145	0.69	-0.3
3,476,080	+		DDA3937_RS15145	0.69	+0.5
3,476,080	+		DDA3937_RS15145	0.69	+0.2
3,476,080	+		DDA3937_RS15145	0.69	+1.0
3,476,081	-		DDA3937_RS15145	0.69	+2.8
3,476,081	-		DDA3937_RS15145	0.69	+0.7
3,476,081	-		DDA3937_RS15145	0.69	+0.7
3,476,081	-		DDA3937_RS15145	0.69	+0.3
3,476,081	-		DDA3937_RS15145	0.69	-0.3
3,476,081	-		DDA3937_RS15145	0.69	-0.2
3,476,081	-		DDA3937_RS15145	0.69	+0.5
3,476,174	+		DDA3937_RS15145	0.73	+0.2
3,476,174	+		DDA3937_RS15145	0.73	-0.2
3,476,174	+		DDA3937_RS15145	0.73	+0.3
3,476,174	+		DDA3937_RS15145	0.73	-1.4
3,476,174	+		DDA3937_RS15145	0.73	+0.9
3,476,174	+		DDA3937_RS15145	0.73	-2.2
3,476,175	-		DDA3937_RS15145	0.73	-0.3
3,476,175	-		DDA3937_RS15145	0.73	-2.2
3,476,175	-		DDA3937_RS15145	0.73	+1.1
3,476,175	-		DDA3937_RS15145	0.73	-1.5
3,476,175	-		DDA3937_RS15145	0.73	+1.3
3,476,175	-		DDA3937_RS15145	0.73	-1.1
3,476,175	-		DDA3937_RS15145	0.73	-1.0
3,476,176	+		DDA3937_RS15145	0.73	-0.5
3,476,176	+		DDA3937_RS15145	0.73	-0.5
3,476,176	+		DDA3937_RS15145	0.73	+0.3
3,476,176	+		DDA3937_RS15145	0.73	+1.8
3,476,176	+		DDA3937_RS15145	0.73	-0.8
3,476,176	+		DDA3937_RS15145	0.73	-0.1
3,476,176	+		DDA3937_RS15145	0.73	+0.2
3,476,176	+		DDA3937_RS15145	0.73	-0.2
3,476,176	+		DDA3937_RS15145	0.73	-1.0
3,476,177	-		DDA3937_RS15145	0.73	-0.0
3,476,177	-		DDA3937_RS15145	0.73	-0.3
3,476,177	-		DDA3937_RS15145	0.73	-0.0
3,476,177	-		DDA3937_RS15145	0.73	+1.2
3,476,177	-		DDA3937_RS15145	0.73	-1.0
3,476,177	-		DDA3937_RS15145	0.73	+0.4
3,476,177	-				+2.8
3,476,177	-		DDA3937_RS15145	0.73	-0.3
3,476,177	-		DDA3937_RS15145	0.73	+1.8
3,476,177	-		DDA3937_RS15145	0.73	-0.3
3,476,403	+		DDA3937_RS15145	0.84	-0.3
3,476,403	+		DDA3937_RS15145	0.84	-1.2
3,476,404	-		DDA3937_RS15145	0.84	-0.4
3,476,404	-		DDA3937_RS15145	0.84	-0.8
3,476,404	-		DDA3937_RS15145	0.84	+1.1
3,476,404	-		DDA3937_RS15145	0.84	+0.3
3,476,404	-		DDA3937_RS15145	0.84	+3.2
3,476,452	-		DDA3937_RS15145	0.86	+0.4
3,476,623	+				-0.1
3,476,623	+				+2.5
3,476,623	+				-0.9
3,476,623	+				-1.2
3,476,624	-				+0.1
3,476,624	-				+0.2
3,476,624	-				-0.2
3,476,624	-				-1.2
3,476,624	-				-0.6
3,476,624	-				+1.0
3,476,624	-				-0.8
3,476,624	-				-1.9
3,476,632	+				-0.8
3,476,736	+				-0.0
3,476,736	+				+1.0
3,476,736	+				+0.4
3,476,736	+				-1.4
3,476,737	-				+1.5
3,476,737	-				+0.2
3,476,848	+				+0.4
3,476,848	+				-0.0
3,476,848	+				-0.2
3,476,848	+				+0.7
3,476,848	+				-0.4
3,476,848	+				+0.8
3,476,848	+				+0.1
3,476,848	+				+0.4
3,476,848	+				-0.3
3,476,848	+				-1.6
3,476,848	+				+1.7
3,476,848	+				-0.1
3,476,848	+				-0.0
3,476,848	+				+0.5
3,476,848	+				+0.1
3,476,848	+				+0.2
3,476,848	+				-0.2
3,476,848	+				+0.2
3,476,848	+				-0.6
3,476,848	+				+0.6
3,476,848	+				+0.4
3,476,848	+				+1.5
3,476,848	+				+0.4
3,476,848	+				+0.2
3,476,848	+				-1.2
3,476,848	+				-0.8
3,476,848	+				+0.6
3,476,848	+				-2.0
3,476,848	+				+0.0
3,476,849	-				-0.6
3,476,849	-				-0.2
3,476,849	-				+0.1
3,476,849	-				-0.4
3,476,849	-				-0.3
3,476,849	-				-0.0
3,476,849	-				-0.3
3,476,849	-				+0.7
3,476,849	-				-0.2
3,476,849	-				-1.7
3,476,849	-				+2.1
3,476,849	-				-0.2
3,476,849	-				-0.9
3,476,849	-				-0.4
3,476,849	-				+0.3
3,476,849	-				+0.3
3,476,849	-				-1.7
3,476,849	-				-1.0
3,476,849	-				-1.0
3,476,849	-				-0.5
3,476,849	-				+1.0
3,476,849	-				-0.7
3,476,849	-				-0.7
3,476,849	-				-1.5
3,476,849	-				-1.0
3,476,849	-				-0.4
3,476,849	-				-0.0
3,476,849	-				+0.4
3,476,849	-				-0.1
3,476,849	-				-1.6
3,476,849	-				-0.6
3,476,849	-				+0.3
3,476,849	-				+0.3
3,476,850	-				-1.6
3,476,867	+				-0.8
3,476,868	-				-0.2
3,476,868	-				+1.1
3,476,870	+				-1.6
3,476,870	+				+0.1
3,476,870	+				+1.0
3,476,870	+				+0.6
3,476,871	-				-1.3
3,476,871	-				-1.3
3,476,871	-				-0.7
3,476,871	-				-0.0
3,476,881	+				-1.3
3,476,881	+				-1.1
3,476,882	-				-0.4
3,476,882	-				-1.8
3,476,882	-				+1.0
3,476,882	-				-0.2
3,476,882	-				-1.3
3,476,882	-				-0.2
3,476,882	-				+1.3
3,476,882	-				-0.7
3,476,905	+				-1.6
3,476,906	-				-0.1
3,476,906	-				-0.3
3,476,906	-				-1.0
3,476,937	+				+0.1
3,476,938	-				+0.6
3,476,940	+				+0.7
3,476,940	+				+0.3
3,476,940	+				+0.3
3,476,940	+				-0.9
3,476,940	+				+1.2
3,476,941	-				+0.2
3,476,944	+				+1.1
3,476,945	-				+0.2
3,476,950	+				-0.9
3,476,951	-				-2.0
3,476,951	-				+0.8
3,476,960	+				-0.5
3,476,961	-				-0.8
3,476,961	-				+0.8
3,476,996	+				-0.2
3,476,996	+				+0.5
3,476,996	+				-0.1
3,476,997	-				-1.0
3,477,000	+				-1.3
3,477,001	-				-1.2
3,477,001	-				-1.0
3,477,102	-				-0.0
3,477,102	-				+2.3
3,477,102	-				-1.1
3,477,102	-				-1.0
3,477,102	-				-1.4
3,477,205	-		DDA3937_RS15150	0.11	-1.3
3,477,260	+		DDA3937_RS15150	0.14	-2.8
3,477,260	+		DDA3937_RS15150	0.14	-2.6
3,477,260	+		DDA3937_RS15150	0.14	-0.3
3,477,260	+		DDA3937_RS15150	0.14	-0.6
3,477,380	-		DDA3937_RS15150	0.19	+0.3
3,477,437	+		DDA3937_RS15150	0.22	-0.7
3,477,437	+		DDA3937_RS15150	0.22	+1.0
3,477,438	-		DDA3937_RS15150	0.22	-1.9
3,477,438	-				-1.6
3,477,438	-		DDA3937_RS15150	0.22	-2.3
3,477,443	+		DDA3937_RS15150	0.22	+0.3
3,477,444	-		DDA3937_RS15150	0.23	-1.3
3,477,482	+		DDA3937_RS15150	0.24	+0.3
3,477,644	+		DDA3937_RS15150	0.32	-1.6
3,477,674	+		DDA3937_RS15150	0.34	-1.2