Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14535

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,328,506	-		DDA3937_RS14525	0.40	+0.6
3,328,506	-		DDA3937_RS14525	0.40	-1.6
3,328,506	-		DDA3937_RS14525	0.40	-0.8
3,328,506	-		DDA3937_RS14525	0.40	-0.7
3,328,632	-		DDA3937_RS14525	0.57	-1.1
3,328,658	+		DDA3937_RS14525	0.60	+0.9
3,328,658	+		DDA3937_RS14525	0.60	-0.1
3,328,658	+		DDA3937_RS14525	0.60	-0.0
3,328,674	+		DDA3937_RS14525	0.62	-0.8
3,328,674	+		DDA3937_RS14525	0.62	-0.8
3,328,674	+		DDA3937_RS14525	0.62	-0.5
3,328,674	+		DDA3937_RS14525	0.62	+0.7
3,328,759	+		DDA3937_RS14525	0.74	-0.8
3,328,760	-		DDA3937_RS14525	0.74	-1.3
3,328,845	-		DDA3937_RS14525	0.85	-1.1
3,328,868	-		DDA3937_RS14525	0.88	-1.2
3,328,868	-		DDA3937_RS14525	0.88	+0.3
3,328,964	+				-0.2
3,328,964	+				-1.6
3,328,965	-				+1.0
3,328,965	-				+1.2
3,328,967	+				-0.6
3,328,967	+				-0.9
3,328,968	-				-0.7
3,328,968	-				+0.9
3,328,968	-				+0.0
3,328,992	+		DDA3937_RS14530	0.13	+3.3
3,328,992	+		DDA3937_RS14530	0.13	+1.8
3,328,993	-		DDA3937_RS14530	0.13	-1.3
3,328,993	-		DDA3937_RS14530	0.13	-0.4
3,328,996	+		DDA3937_RS14530	0.14	-0.0
3,328,997	-		DDA3937_RS14530	0.15	-1.0
3,329,065	+		DDA3937_RS14530	0.36	-1.7
3,329,065	+		DDA3937_RS14530	0.36	+0.5
3,329,066	-		DDA3937_RS14530	0.37	-0.7
3,329,066	-		DDA3937_RS14530	0.37	-0.4
3,329,156	+		DDA3937_RS14530	0.65	+1.1
3,329,239	+				-0.3
3,329,263	+				-0.7
3,329,263	+				-1.9
3,329,264	-				+0.2
3,329,264	-				-1.4
3,329,264	-				-1.5
3,329,264	-				-0.5
3,329,346	+				+1.7
3,329,347	-				-0.1
3,329,347	-				-0.7
3,329,348	+				-0.4
3,329,349	-				-0.7
3,329,349	-				+0.1
3,329,349	-				-1.6
3,329,349	-				-0.8
3,329,349	-				-0.1
3,329,351	+				+1.3
3,329,351	+				-0.6
3,329,352	-				-1.1
3,329,352	-				-1.4
3,329,352	-				-0.7
3,329,352	-				+0.1
3,329,352	-				+1.2
3,329,378	-				+0.4
3,329,434	+				-1.2
3,329,434	+				-1.7
3,329,434	+				-0.8
3,329,434	+				-1.0
3,329,435	-				+0.7
3,329,456	+				+0.3
3,329,456	+				-0.9
3,329,457	-				-0.9
3,329,457	-				-0.2
3,329,457	-				+3.5
3,329,457	-				+0.9
3,329,481	+				+0.4
3,329,505	-		DDA3937_RS14535	0.12	-0.2
3,329,568	+		DDA3937_RS14535	0.27	+1.1
3,329,568	+		DDA3937_RS14535	0.27	+0.3
3,329,568	+		DDA3937_RS14535	0.27	+1.9
3,329,568	+		DDA3937_RS14535	0.27	+0.9
3,329,569	-		DDA3937_RS14535	0.27	-0.5
3,329,569	-		DDA3937_RS14535	0.27	-1.0
3,329,569	-		DDA3937_RS14535	0.27	+1.9
3,329,572	+		DDA3937_RS14535	0.27	+0.6
3,329,572	-		DDA3937_RS14535	0.27	+0.2
3,329,572	-		DDA3937_RS14535	0.27	-0.1
3,329,572	-		DDA3937_RS14535	0.27	+0.0
3,329,643	+		DDA3937_RS14535	0.44	+0.4
3,329,643	+		DDA3937_RS14535	0.44	-1.2
3,329,643	+		DDA3937_RS14535	0.44	-1.4
3,329,644	-		DDA3937_RS14535	0.44	+0.6
3,329,644	-		DDA3937_RS14535	0.44	+0.2
3,329,644	-		DDA3937_RS14535	0.44	+0.8
3,329,788	+		DDA3937_RS14535	0.78	-0.4
3,329,789	-		DDA3937_RS14535	0.78	+0.5
3,329,802	+		DDA3937_RS14535	0.81	-1.7
3,329,803	-		DDA3937_RS14535	0.82	-0.2
3,329,859	-				-1.0
3,329,863	+				+0.6
3,329,863	+				-0.2
3,329,863	+				-0.3
3,329,864	-				-0.4
3,329,864	-				+0.9
3,329,880	+				-0.0
3,329,880	+				+0.1
3,329,880	+				-0.1
3,329,880	+				+0.0
3,329,880	+				-1.8
3,329,880	+				+0.1
3,329,880	+				-0.4
3,329,880	+				+1.6
3,329,881	-				-1.4
3,329,881	-				+1.8
3,329,881	-				-0.7
3,329,881	-				-0.5
3,329,918	-				+0.6
3,329,918	-				+1.8
3,329,925	+				-0.4
3,330,035	+		DDA3937_RS14540	0.13	-0.6
3,330,051	+		DDA3937_RS14540	0.16	-0.4
3,330,090	+		DDA3937_RS14540	0.22	-0.2
3,330,091	-		DDA3937_RS14540	0.22	-0.2
3,330,123	+		DDA3937_RS14540	0.27	+0.4
3,330,143	+		DDA3937_RS14540	0.31	+0.8
3,330,156	-		DDA3937_RS14540	0.33	-0.7
3,330,188	+		DDA3937_RS14540	0.38	+0.1
3,330,188	+		DDA3937_RS14540	0.38	-1.3
3,330,188	+		DDA3937_RS14540	0.38	-1.1
3,330,189	-		DDA3937_RS14540	0.38	-0.4
3,330,189	-		DDA3937_RS14540	0.38	-1.0
3,330,250	+		DDA3937_RS14540	0.48	-1.2
3,330,253	+		DDA3937_RS14540	0.48	+1.6
3,330,253	+		DDA3937_RS14540	0.48	-0.6
3,330,254	-		DDA3937_RS14540	0.48	-0.2
3,330,254	-		DDA3937_RS14540	0.48	-2.3
3,330,300	-		DDA3937_RS14540	0.56	-0.1
3,330,300	-		DDA3937_RS14540	0.56	+0.2
3,330,300	-		DDA3937_RS14540	0.56	+1.5
3,330,308	+		DDA3937_RS14540	0.57	-0.4
3,330,309	-				-1.7
3,330,309	-		DDA3937_RS14540	0.57	-1.1
3,330,357	+		DDA3937_RS14540	0.65	-0.8
3,330,357	+		DDA3937_RS14540	0.65	+0.5
3,330,357	+		DDA3937_RS14540	0.65	+0.5
3,330,358	-		DDA3937_RS14540	0.65	+0.1
3,330,358	-				+0.5
3,330,363	-		DDA3937_RS14540	0.66	+0.9
3,330,363	-				-0.1
3,330,363	-		DDA3937_RS14540	0.66	-1.4
3,330,424	-		DDA3937_RS14540	0.75	-0.4
3,330,444	+		DDA3937_RS14540	0.78	+0.5
3,330,523	+				-0.2
3,330,539	-				-0.3
3,330,565	+				+0.9
3,330,566	-				-1.3
3,330,566	-				+0.9
3,330,571	+				+0.9
3,330,621	-				-1.6
3,330,621	-				+0.0
3,330,671	-				+0.1
3,330,676	+		DDA3937_RS14545	0.10	+0.7
3,330,693	+		DDA3937_RS14545	0.13	-1.3
3,330,693	+		DDA3937_RS14545	0.13	+0.3
3,330,694	-		DDA3937_RS14545	0.13	-0.8
3,330,694	-		DDA3937_RS14545	0.13	+0.6
3,330,694	-		DDA3937_RS14545	0.13	+0.2
3,330,720	+		DDA3937_RS14545	0.17	-0.1
3,330,720	+		DDA3937_RS14545	0.17	+0.9
3,330,721	-		DDA3937_RS14545	0.17	-0.1
3,330,806	-		DDA3937_RS14545	0.30	-2.8