Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13675

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,112,635	+		DDA3937_RS13670	0.33	+0.2
3,112,635	+		DDA3937_RS13670	0.33	-1.7
3,112,636	-		DDA3937_RS13670	0.34	+1.1
3,112,682	+		DDA3937_RS13670	0.37	+2.1
3,112,683	-		DDA3937_RS13670	0.37	-1.0
3,112,753	+		DDA3937_RS13670	0.42	+0.0
3,112,753	+		DDA3937_RS13670	0.42	-1.4
3,112,754	-		DDA3937_RS13670	0.42	-1.1
3,112,754	-		DDA3937_RS13670	0.42	-0.1
3,112,754	-		DDA3937_RS13670	0.42	-0.3
3,112,868	+		DDA3937_RS13670	0.49	-0.7
3,112,869	-		DDA3937_RS13670	0.50	+1.0
3,112,869	-		DDA3937_RS13670	0.50	+0.8
3,112,949	+		DDA3937_RS13670	0.55	+3.5
3,112,950	-		DDA3937_RS13670	0.55	+0.0
3,112,973	+		DDA3937_RS13670	0.57	-0.1
3,113,028	+		DDA3937_RS13670	0.60	-2.0
3,113,029	-		DDA3937_RS13670	0.61	+0.1
3,113,029	-		DDA3937_RS13670	0.61	-0.4
3,113,053	-		DDA3937_RS13670	0.62	-1.5
3,113,072	-		DDA3937_RS13670	0.64	+3.3
3,113,072	-		DDA3937_RS13670	0.64	-0.3
3,113,072	-		DDA3937_RS13670	0.64	-0.1
3,113,072	-		DDA3937_RS13670	0.64	+0.1
3,113,118	+		DDA3937_RS13670	0.67	-0.1
3,113,119	-		DDA3937_RS13670	0.67	-1.3
3,113,133	+		DDA3937_RS13670	0.68	+0.5
3,113,152	+		DDA3937_RS13670	0.69	+0.3
3,113,152	+		DDA3937_RS13670	0.69	-0.1
3,113,152	+		DDA3937_RS13670	0.69	+0.5
3,113,152	+		DDA3937_RS13670	0.69	+1.4
3,113,153	-		DDA3937_RS13670	0.69	-1.1
3,113,153	-		DDA3937_RS13670	0.69	-0.6
3,113,154	+		DDA3937_RS13670	0.69	-1.7
3,113,154	+		DDA3937_RS13670	0.69	+0.0
3,113,154	+		DDA3937_RS13670	0.69	-0.5
3,113,154	+		DDA3937_RS13670	0.69	-0.4
3,113,154	+		DDA3937_RS13670	0.69	-2.0
3,113,155	-		DDA3937_RS13670	0.69	+0.2
3,113,155	-		DDA3937_RS13670	0.69	+1.1
3,113,155	-		DDA3937_RS13670	0.69	-0.7
3,113,155	-		DDA3937_RS13670	0.69	+0.4
3,113,155	-		DDA3937_RS13670	0.69	-0.4
3,113,155	-		DDA3937_RS13670	0.69	-0.9
3,113,155	-		DDA3937_RS13670	0.69	-1.1
3,113,155	-		DDA3937_RS13670	0.69	-0.4
3,113,155	-		DDA3937_RS13670	0.69	-2.1
3,113,194	+		DDA3937_RS13670	0.72	+0.4
3,113,229	+				+0.3
3,113,229	+		DDA3937_RS13670	0.74	-0.3
3,113,229	+		DDA3937_RS13670	0.74	-2.1
3,113,289	+		DDA3937_RS13670	0.78	-0.9
3,113,320	+		DDA3937_RS13670	0.81	-1.5
3,113,530	+				-1.1
3,113,531	-				-0.0
3,113,598	+				-0.1
3,113,598	+				-0.4
3,113,789	+		DDA3937_RS13675	0.25	-1.0
3,113,789	+		DDA3937_RS13675	0.25	-0.6
3,113,790	-		DDA3937_RS13675	0.25	-0.3
3,113,880	+		DDA3937_RS13675	0.37	+0.2
3,113,880	+		DDA3937_RS13675	0.37	+0.1
3,113,882	+		DDA3937_RS13675	0.37	-0.9
3,113,883	-		DDA3937_RS13675	0.38	-1.3
3,113,883	-		DDA3937_RS13675	0.38	+2.0
3,113,883	-		DDA3937_RS13675	0.38	+0.2
3,114,007	+		DDA3937_RS13675	0.54	-0.6
3,114,007	+		DDA3937_RS13675	0.54	-1.7
3,114,036	+		DDA3937_RS13675	0.58	-1.1
3,114,036	+		DDA3937_RS13675	0.58	-0.9
3,114,037	-		DDA3937_RS13675	0.58	-2.0
3,114,037	-		DDA3937_RS13675	0.58	-0.8
3,114,040	+		DDA3937_RS13675	0.58	-1.5
3,114,040	+		DDA3937_RS13675	0.58	-0.6
3,114,040	+		DDA3937_RS13675	0.58	+0.7
3,114,040	+				+1.4
3,114,041	-				+1.9
3,114,043	+		DDA3937_RS13675	0.59	-0.2
3,114,043	+		DDA3937_RS13675	0.59	-1.1
3,114,043	+		DDA3937_RS13675	0.59	-0.5
3,114,044	-		DDA3937_RS13675	0.59	-1.7
3,114,044	-		DDA3937_RS13675	0.59	-1.3
3,114,044	-		DDA3937_RS13675	0.59	-1.4
3,114,210	-		DDA3937_RS13675	0.81	+0.3
3,114,210	-		DDA3937_RS13675	0.81	+1.2
3,114,254	-		DDA3937_RS13675	0.87	-0.1
3,114,254	-		DDA3937_RS13675	0.87	-0.4
3,114,296	-				-0.1
3,114,296	-				-1.1
3,114,366	+				-1.6
3,114,366	+				-0.1
3,114,367	-				-1.6
3,114,422	+				+0.4
3,114,423	-				-0.4
3,114,606	+				+0.5
3,114,606	+				-0.2
3,114,607	-				-1.0
3,114,607	-				+0.3
3,114,614	+				-0.1
3,114,615	-				-2.5
3,114,615	-				-0.6
3,114,629	+				-0.5
3,114,629	+				+0.4
3,114,629	+				-2.0
3,114,629	+				+0.5
3,114,629	+				-2.0
3,114,629	+				-0.7
3,114,630	-				-0.9
3,114,630	-				-0.5
3,114,630	-				-0.1
3,114,669	+				+0.3
3,114,670	-				-1.1
3,114,670	-				+0.3
3,114,710	+		DDA3937_RS13680	0.10	-0.8
3,114,711	-		DDA3937_RS13680	0.11	-0.6
3,114,761	-		DDA3937_RS13680	0.12	-0.7
3,114,811	+		DDA3937_RS13680	0.13	-2.0
3,114,829	-		DDA3937_RS13680	0.14	+0.4
3,114,837	+		DDA3937_RS13680	0.14	+0.3
3,114,837	+		DDA3937_RS13680	0.14	-1.0
3,114,837	+		DDA3937_RS13680	0.14	+0.4
3,114,838	-		DDA3937_RS13680	0.14	-0.1
3,114,838	-		DDA3937_RS13680	0.14	-0.2
3,114,838	-		DDA3937_RS13680	0.14	-0.5
3,114,838	-		DDA3937_RS13680	0.14	-0.4
3,114,929	+		DDA3937_RS13680	0.17	-0.5
3,114,929	+		DDA3937_RS13680	0.17	-0.1
3,114,941	+		DDA3937_RS13680	0.17	+0.9
3,114,941	+		DDA3937_RS13680	0.17	+0.9
3,114,941	+		DDA3937_RS13680	0.17	+0.5
3,114,941	+		DDA3937_RS13680	0.17	-1.1
3,114,941	+		DDA3937_RS13680	0.17	-0.8
3,114,941	+		DDA3937_RS13680	0.17	-0.1
3,114,942	-		DDA3937_RS13680	0.17	-0.5
3,114,942	-		DDA3937_RS13680	0.17	+0.1
3,114,943	+		DDA3937_RS13680	0.17	+1.4
3,114,944	-		DDA3937_RS13680	0.17	-0.1
3,115,057	+		DDA3937_RS13680	0.21	+0.0
3,115,120	+		DDA3937_RS13680	0.23	-0.5
3,115,121	-		DDA3937_RS13680	0.23	-0.5
3,115,121	-		DDA3937_RS13680	0.23	-0.3
3,115,121	-		DDA3937_RS13680	0.23	-0.1
3,115,153	+		DDA3937_RS13680	0.24	+1.0
3,115,153	+		DDA3937_RS13680	0.24	+0.1
3,115,154	-		DDA3937_RS13680	0.24	+1.6
3,115,247	+		DDA3937_RS13680	0.26	-0.4
3,115,248	-		DDA3937_RS13680	0.26	+0.4
3,115,248	-		DDA3937_RS13680	0.26	-0.2
3,115,248	-		DDA3937_RS13680	0.26	-0.1
3,115,295	+		DDA3937_RS13680	0.28	-0.6
3,115,308	+		DDA3937_RS13680	0.28	-0.5