Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13555

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,087,258	+		DDA3937_RS13550	0.15	+0.4
3,087,259	-		DDA3937_RS13550	0.15	+1.2
3,087,296	+		DDA3937_RS13550	0.18	-1.7
3,087,339	-		DDA3937_RS13550	0.22	+0.1
3,087,371	+		DDA3937_RS13550	0.25	-2.1
3,087,372	-		DDA3937_RS13550	0.25	-0.2
3,087,382	-		DDA3937_RS13550	0.26	-1.0
3,087,492	+		DDA3937_RS13550	0.36	+0.8
3,087,493	-		DDA3937_RS13550	0.36	+2.2
3,087,493	-		DDA3937_RS13550	0.36	-0.2
3,087,493	-		DDA3937_RS13550	0.36	+0.7
3,087,519	+		DDA3937_RS13550	0.38	+1.1
3,087,533	+		DDA3937_RS13550	0.39	+2.7
3,087,534	-		DDA3937_RS13550	0.39	+1.5
3,087,552	+				-1.2
3,087,552	+		DDA3937_RS13550	0.41	-0.0
3,087,552	+		DDA3937_RS13550	0.41	+1.4
3,087,552	+		DDA3937_RS13550	0.41	+1.4
3,087,552	+		DDA3937_RS13550	0.41	+0.7
3,087,552	+				+1.8
3,087,553	-		DDA3937_RS13550	0.41	+1.6
3,087,553	-		DDA3937_RS13550	0.41	+1.5
3,087,553	-		DDA3937_RS13550	0.41	+1.9
3,087,553	-		DDA3937_RS13550	0.41	-0.6
3,087,553	-		DDA3937_RS13550	0.41	+2.2
3,087,553	-		DDA3937_RS13550	0.41	+1.2
3,087,553	-		DDA3937_RS13550	0.41	+0.1
3,087,554	+		DDA3937_RS13550	0.41	+1.4
3,087,605	+		DDA3937_RS13550	0.46	+2.0
3,087,677	+		DDA3937_RS13550	0.52	+1.8
3,087,678	-		DDA3937_RS13550	0.52	+0.0
3,087,678	-		DDA3937_RS13550	0.52	+1.5
3,087,698	+		DDA3937_RS13550	0.54	+1.0
3,087,698	+		DDA3937_RS13550	0.54	+1.7
3,087,699	-		DDA3937_RS13550	0.54	+0.8
3,087,719	+		DDA3937_RS13550	0.56	+0.6
3,087,720	-		DDA3937_RS13550	0.56	+1.0
3,087,721	+		DDA3937_RS13550	0.56	+1.5
3,087,721	+				+1.8
3,087,721	+		DDA3937_RS13550	0.56	+1.3
3,087,721	+		DDA3937_RS13550	0.56	+0.6
3,087,721	+		DDA3937_RS13550	0.56	+1.4
3,087,721	+		DDA3937_RS13550	0.56	+0.5
3,087,722	-		DDA3937_RS13550	0.56	+0.7
3,087,722	-				+1.4
3,087,722	-		DDA3937_RS13550	0.56	+0.3
3,087,722	-		DDA3937_RS13550	0.56	+0.1
3,087,722	-		DDA3937_RS13550	0.56	+0.3
3,087,722	-		DDA3937_RS13550	0.56	+2.8
3,087,785	+		DDA3937_RS13550	0.61	+1.9
3,087,785	+		DDA3937_RS13550	0.61	-0.1
3,087,785	+		DDA3937_RS13550	0.61	+2.4
3,087,785	+		DDA3937_RS13550	0.61	+1.8
3,087,786	-		DDA3937_RS13550	0.62	-1.2
3,087,789	+		DDA3937_RS13550	0.62	+2.7
3,087,789	+		DDA3937_RS13550	0.62	+0.5
3,087,790	-		DDA3937_RS13550	0.62	+0.7
3,087,790	-		DDA3937_RS13550	0.62	+0.3
3,087,790	-		DDA3937_RS13550	0.62	+0.4
3,087,829	-		DDA3937_RS13550	0.65	+0.8
3,087,836	+		DDA3937_RS13550	0.66	+1.1
3,087,836	+		DDA3937_RS13550	0.66	+0.1
3,087,837	-		DDA3937_RS13550	0.66	+2.1
3,087,936	+		DDA3937_RS13550	0.75	+1.5
3,087,937	-		DDA3937_RS13550	0.75	+0.0
3,087,937	-		DDA3937_RS13550	0.75	-0.2
3,087,937	-		DDA3937_RS13550	0.75	-2.1
3,088,016	+		DDA3937_RS13550	0.82	+2.1
3,088,016	+		DDA3937_RS13550	0.82	+1.8
3,088,046	-		DDA3937_RS13550	0.85	+2.3
3,088,118	+				-0.0
3,088,119	-				+2.7
3,088,184	+				+1.4
3,088,261	+				-0.5
3,088,262	-				-0.1
3,088,262	-				-0.4
3,088,262	-				-0.5
3,088,267	+				+1.4
3,088,267	+				+1.3
3,088,268	-				+1.6
3,088,309	-		DDA3937_RS13555	0.10	+1.8
3,088,309	-		DDA3937_RS13555	0.10	-0.7
3,088,318	+		DDA3937_RS13555	0.11	+1.6
3,088,319	-		DDA3937_RS13555	0.11	+0.4
3,088,424	+		DDA3937_RS13555	0.23	+2.4
3,088,424	+		DDA3937_RS13555	0.23	+1.2
3,088,424	+		DDA3937_RS13555	0.23	+1.0
3,088,469	-		DDA3937_RS13555	0.28	+0.5
3,088,702	+		DDA3937_RS13555	0.55	+2.2
3,088,736	+		DDA3937_RS13555	0.58	+1.1
3,088,736	+		DDA3937_RS13555	0.58	+1.8
3,088,737	-		DDA3937_RS13555	0.59	+1.7
3,088,737	-		DDA3937_RS13555	0.59	+1.3
3,088,737	-		DDA3937_RS13555	0.59	+2.1
3,088,737	-		DDA3937_RS13555	0.59	+1.6
3,088,737	-		DDA3937_RS13555	0.59	+0.3
3,088,741	+		DDA3937_RS13555	0.59	+1.6
3,088,742	-		DDA3937_RS13555	0.59	+0.3
3,088,743	+		DDA3937_RS13555	0.59	+2.3
3,088,743	+		DDA3937_RS13555	0.59	+1.3
3,088,743	+		DDA3937_RS13555	0.59	+2.0
3,088,743	+		DDA3937_RS13555	0.59	+1.8
3,088,743	+		DDA3937_RS13555	0.59	+2.7
3,088,744	-		DDA3937_RS13555	0.59	+1.0
3,088,744	-		DDA3937_RS13555	0.59	+2.0
3,088,744	-		DDA3937_RS13555	0.59	-0.1
3,088,744	-				-1.7
3,088,744	-		DDA3937_RS13555	0.59	+0.6
3,088,744	-		DDA3937_RS13555	0.59	+1.5
3,088,744	-		DDA3937_RS13555	0.59	+1.5
3,088,744	-		DDA3937_RS13555	0.59	+0.0
3,088,744	-		DDA3937_RS13555	0.59	+1.8
3,088,744	-		DDA3937_RS13555	0.59	+0.5
3,088,744	-		DDA3937_RS13555	0.59	+1.7
3,088,744	-		DDA3937_RS13555	0.59	+2.2
3,088,859	+		DDA3937_RS13555	0.72	+1.4
3,088,860	-		DDA3937_RS13555	0.72	+2.1
3,088,862	+		DDA3937_RS13555	0.73	+1.5
3,088,863	-		DDA3937_RS13555	0.73	+1.8
3,088,881	+		DDA3937_RS13555	0.75	+2.8
3,088,881	+		DDA3937_RS13555	0.75	+2.4
3,088,881	+		DDA3937_RS13555	0.75	+1.8
3,088,882	-		DDA3937_RS13555	0.75	+1.7
3,088,882	-		DDA3937_RS13555	0.75	+2.8
3,088,882	-		DDA3937_RS13555	0.75	+2.5
3,088,882	-		DDA3937_RS13555	0.75	+3.0
3,088,882	-		DDA3937_RS13555	0.75	+1.9
3,088,882	-		DDA3937_RS13555	0.75	+2.5
3,088,883	+		DDA3937_RS13555	0.75	+1.6
3,088,894	+		DDA3937_RS13555	0.76	+2.3
3,088,894	+		DDA3937_RS13555	0.76	+1.3
3,088,894	+		DDA3937_RS13555	0.76	+0.5
3,088,894	+		DDA3937_RS13555	0.76	+2.7
3,088,895	-		DDA3937_RS13555	0.76	-0.6
3,088,960	+		DDA3937_RS13555	0.84	+0.4
3,088,969	+		DDA3937_RS13555	0.85	-0.5
3,088,970	-		DDA3937_RS13555	0.85	+2.7
3,089,019	+				-0.2
3,089,019	+				+2.8
3,089,020	-				+1.9
3,089,020	-				+1.3
3,089,047	+				+1.8
3,089,048	-				+2.1
3,089,063	+				+1.5
3,089,063	+				+1.6
3,089,063	+				+1.9
3,089,063	+				+1.7
3,089,063	+				+1.9
3,089,063	+				+1.3
3,089,064	-				+1.6
3,089,064	-				+2.0
3,089,064	-				+0.2
3,089,072	+				+1.9
3,089,072	+				+2.4
3,089,072	+				+1.3
3,089,073	-				+2.2
3,089,073	-				+1.7
3,089,073	-				+0.7
3,089,073	-				+2.2
3,089,073	-				+2.7
3,089,073	-				+3.0
3,089,075	-				+3.5
3,089,085	+				+2.0
3,089,093	+				+2.0
3,089,093	+				+0.6
3,089,093	+				+2.7
3,089,094	-				+1.8
3,089,094	-				+3.2
3,089,095	+				+2.0
3,089,096	-				+1.4
3,089,117	+				+2.0
3,089,117	+				+2.1
3,089,117	+				+2.3
3,089,118	-				-1.7
3,089,118	-				-1.7
3,089,118	-				-0.0
3,089,118	-				-1.2
3,089,125	-				+0.0
3,089,125	-				-1.3
3,089,147	+				+1.7
3,089,147	+				+1.6
3,089,148	-				-1.3
3,089,148	-				-0.3
3,089,159	+				+4.0
3,089,171	-				+3.1
3,089,277	+				+0.1
3,089,277	+				+3.0
3,089,277	+				+1.8
3,089,277	+				+0.6
3,089,277	+				+2.0
3,089,277	+				-1.5
3,089,282	+				+0.7
3,089,340	+		DDA3937_RS13560	0.18	+0.6
3,089,358	-		DDA3937_RS13560	0.21	+0.3
3,089,358	-		DDA3937_RS13560	0.21	+0.5
3,089,384	+		DDA3937_RS13560	0.25	-0.5
3,089,384	+		DDA3937_RS13560	0.25	+1.5
3,089,384	+		DDA3937_RS13560	0.25	+0.4
3,089,384	+		DDA3937_RS13560	0.25	+2.1
3,089,385	-		DDA3937_RS13560	0.25	+0.6
3,089,385	-		DDA3937_RS13560	0.25	+0.5
3,089,385	-		DDA3937_RS13560	0.25	-0.2
3,089,405	+		DDA3937_RS13560	0.29	+0.2
3,089,405	+		DDA3937_RS13560	0.29	+0.4
3,089,405	+		DDA3937_RS13560	0.29	-0.2
3,089,405	+		DDA3937_RS13560	0.29	+0.8
3,089,405	+		DDA3937_RS13560	0.29	+1.1
3,089,406	-		DDA3937_RS13560	0.29	+0.7
3,089,406	-		DDA3937_RS13560	0.29	+0.3
3,089,406	-		DDA3937_RS13560	0.29	-0.2
3,089,406	-		DDA3937_RS13560	0.29	+0.3
3,089,406	-		DDA3937_RS13560	0.29	+1.2
3,089,578	+		DDA3937_RS13560	0.59	+0.5
3,089,579	-		DDA3937_RS13560	0.59	+1.1
3,089,586	-		DDA3937_RS13560	0.60	+0.3
3,089,587	+		DDA3937_RS13560	0.60	+0.9
3,089,587	+		DDA3937_RS13560	0.60	+1.4
3,089,587	+		DDA3937_RS13560	0.60	+0.0
3,089,587	+		DDA3937_RS13560	0.60	+0.2
3,089,587	+		DDA3937_RS13560	0.60	+0.3
3,089,607	-		DDA3937_RS13560	0.64	+1.5
3,089,607	-		DDA3937_RS13560	0.64	+2.1
3,089,669	+		DDA3937_RS13560	0.74	+0.7
3,089,669	+		DDA3937_RS13560	0.74	-0.7
3,089,669	+		DDA3937_RS13560	0.74	+2.2
3,089,684	+		DDA3937_RS13560	0.77	+0.3
3,089,685	-		DDA3937_RS13560	0.77	+0.2
3,089,685	-		DDA3937_RS13560	0.77	+0.3
3,089,686	+		DDA3937_RS13560	0.77	+1.0
3,089,687	-		DDA3937_RS13560	0.78	-0.4
3,089,687	-		DDA3937_RS13560	0.78	-0.2
3,089,712	+		DDA3937_RS13560	0.82	+1.3
3,089,713	-		DDA3937_RS13560	0.82	+0.1
3,089,713	-		DDA3937_RS13560	0.82	+0.8
3,089,786	+				-0.3
3,089,786	+				+0.6
3,089,786	+				+0.3
3,089,787	-				+1.0
3,089,787	-				+0.7
3,089,802	-				+0.0
3,089,802	-				+0.5
3,089,820	+				+1.8
3,089,820	+				+1.0
3,089,821	-				+2.0
3,089,867	+		DDA3937_RS13565	0.14	+0.1
3,089,867	+		DDA3937_RS13565	0.14	+2.7
3,089,868	-		DDA3937_RS13565	0.14	+0.1
3,089,870	+		DDA3937_RS13565	0.15	+0.7
3,089,871	-		DDA3937_RS13565	0.15	-1.1
3,089,871	-		DDA3937_RS13565	0.15	+0.4
3,089,891	-		DDA3937_RS13565	0.21	+0.8
3,089,936	+		DDA3937_RS13565	0.33	+0.1
3,089,937	-		DDA3937_RS13565	0.34	-0.4
3,089,940	-		DDA3937_RS13565	0.34	+0.2
3,089,944	+		DDA3937_RS13565	0.36	-0.3
3,089,950	+		DDA3937_RS13565	0.37	-0.0
3,089,950	+		DDA3937_RS13565	0.37	+0.7
3,089,951	-		DDA3937_RS13565	0.38	+1.0
3,089,978	+		DDA3937_RS13565	0.45	+0.1
3,089,978	+		DDA3937_RS13565	0.45	+0.2
3,089,979	-		DDA3937_RS13565	0.46	+0.9
3,089,981	+		DDA3937_RS13565	0.46	-0.7
3,089,981	+		DDA3937_RS13565	0.46	+0.5
3,089,981	+		DDA3937_RS13565	0.46	-0.2
3,089,982	-		DDA3937_RS13565	0.46	+1.2
3,089,982	-		DDA3937_RS13565	0.46	+0.5
3,089,982	-		DDA3937_RS13565	0.46	+0.8
3,089,982	-		DDA3937_RS13565	0.46	+0.3
3,089,982	-		DDA3937_RS13565	0.46	-0.1
3,090,005	+		DDA3937_RS13565	0.53	+0.2
3,090,006	-		DDA3937_RS13565	0.53	+0.7
3,090,099	-		DDA3937_RS13565	0.80	-0.3