Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13550

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,086,093	-		DDA3937_RS13545	0.51	-0.2
3,086,093	-		DDA3937_RS13545	0.51	-1.2
3,086,106	+		DDA3937_RS13545	0.52	-2.3
3,086,106	+		DDA3937_RS13545	0.52	-1.2
3,086,106	+		DDA3937_RS13545	0.52	-0.8
3,086,106	+		DDA3937_RS13545	0.52	-1.9
3,086,106	+		DDA3937_RS13545	0.52	-1.9
3,086,107	-		DDA3937_RS13545	0.52	-2.0
3,086,107	-		DDA3937_RS13545	0.52	-1.3
3,086,107	-		DDA3937_RS13545	0.52	-2.2
3,086,107	-		DDA3937_RS13545	0.52	-1.4
3,086,109	+		DDA3937_RS13545	0.52	-0.6
3,086,110	-		DDA3937_RS13545	0.52	-0.7
3,086,172	+		DDA3937_RS13545	0.55	-3.0
3,086,173	-		DDA3937_RS13545	0.55	-1.0
3,086,173	-		DDA3937_RS13545	0.55	-1.8
3,086,472	+		DDA3937_RS13545	0.70	-0.3
3,086,482	+		DDA3937_RS13545	0.71	-0.9
3,086,483	-		DDA3937_RS13545	0.71	-0.5
3,086,483	-		DDA3937_RS13545	0.71	-2.9
3,086,493	+		DDA3937_RS13545	0.71	-0.5
3,086,493	+		DDA3937_RS13545	0.71	-0.3
3,086,493	+		DDA3937_RS13545	0.71	-1.9
3,086,493	+		DDA3937_RS13545	0.71	-0.9
3,086,493	+		DDA3937_RS13545	0.71	-1.7
3,086,494	-		DDA3937_RS13545	0.71	-0.2
3,086,494	-		DDA3937_RS13545	0.71	-0.7
3,086,499	+		DDA3937_RS13545	0.72	-1.2
3,086,499	+		DDA3937_RS13545	0.72	-0.8
3,086,500	-		DDA3937_RS13545	0.72	-1.5
3,086,500	-		DDA3937_RS13545	0.72	+0.8
3,086,500	-		DDA3937_RS13545	0.72	-1.7
3,086,580	+		DDA3937_RS13545	0.76	+0.3
3,086,581	-		DDA3937_RS13545	0.76	-0.4
3,086,589	+		DDA3937_RS13545	0.76	-0.7
3,086,730	+		DDA3937_RS13545	0.83	-1.2
3,086,730	+		DDA3937_RS13545	0.83	-1.1
3,086,730	+		DDA3937_RS13545	0.83	-1.5
3,086,730	+		DDA3937_RS13545	0.83	-1.2
3,086,730	+		DDA3937_RS13545	0.83	-2.0
3,086,731	-		DDA3937_RS13545	0.83	+0.0
3,086,731	-		DDA3937_RS13545	0.83	-1.6
3,086,731	-				+0.8
3,086,732	+		DDA3937_RS13545	0.83	-0.6
3,086,732	+		DDA3937_RS13545	0.83	-0.6
3,086,733	-		DDA3937_RS13545	0.83	-0.4
3,086,733	-		DDA3937_RS13545	0.83	-0.8
3,086,771	+		DDA3937_RS13545	0.85	-0.7
3,086,772	-		DDA3937_RS13545	0.85	-2.0
3,086,824	-		DDA3937_RS13545	0.88	-0.7
3,086,878	+				-1.2
3,086,878	+				-0.9
3,086,879	-				-1.2
3,086,879	-				-0.4
3,086,881	+				-1.5
3,086,881	+				-0.7
3,086,881	+				-0.2
3,086,882	-				-1.2
3,086,882	-				+0.4
3,086,902	+				-1.6
3,086,903	-				-0.2
3,086,934	+				-0.1
3,086,957	-				-0.9
3,087,004	+				-0.0
3,087,004	+				-0.3
3,087,005	-				-0.2
3,087,005	-				-2.3
3,087,005	-				-1.4
3,087,161	+				-0.7
3,087,161	+				-1.0
3,087,161	+				-0.7
3,087,161	+				-1.2
3,087,162	-				-0.6
3,087,162	-				-0.5
3,087,164	+				+0.6
3,087,164	+				-0.2
3,087,165	-				-1.5
3,087,165	-				-1.6
3,087,165	-				-0.0
3,087,165	-				-1.4
3,087,258	+		DDA3937_RS13550	0.15	+0.4
3,087,259	-		DDA3937_RS13550	0.15	+1.2
3,087,296	+		DDA3937_RS13550	0.18	-1.7
3,087,339	-		DDA3937_RS13550	0.22	+0.1
3,087,371	+		DDA3937_RS13550	0.25	-2.1
3,087,372	-		DDA3937_RS13550	0.25	-0.2
3,087,382	-		DDA3937_RS13550	0.26	-1.0
3,087,492	+		DDA3937_RS13550	0.36	+0.8
3,087,493	-		DDA3937_RS13550	0.36	+2.2
3,087,493	-		DDA3937_RS13550	0.36	-0.2
3,087,493	-		DDA3937_RS13550	0.36	+0.7
3,087,519	+		DDA3937_RS13550	0.38	+1.1
3,087,533	+		DDA3937_RS13550	0.39	+2.7
3,087,534	-		DDA3937_RS13550	0.39	+1.5
3,087,552	+				-1.2
3,087,552	+		DDA3937_RS13550	0.41	-0.0
3,087,552	+		DDA3937_RS13550	0.41	+1.4
3,087,552	+		DDA3937_RS13550	0.41	+1.4
3,087,552	+		DDA3937_RS13550	0.41	+0.7
3,087,552	+				+1.8
3,087,553	-		DDA3937_RS13550	0.41	+1.6
3,087,553	-		DDA3937_RS13550	0.41	+1.5
3,087,553	-		DDA3937_RS13550	0.41	+1.9
3,087,553	-		DDA3937_RS13550	0.41	-0.6
3,087,553	-		DDA3937_RS13550	0.41	+2.2
3,087,553	-		DDA3937_RS13550	0.41	+1.2
3,087,553	-		DDA3937_RS13550	0.41	+0.1
3,087,554	+		DDA3937_RS13550	0.41	+1.4
3,087,605	+		DDA3937_RS13550	0.46	+2.0
3,087,677	+		DDA3937_RS13550	0.52	+1.8
3,087,678	-		DDA3937_RS13550	0.52	+0.0
3,087,678	-		DDA3937_RS13550	0.52	+1.5
3,087,698	+		DDA3937_RS13550	0.54	+1.0
3,087,698	+		DDA3937_RS13550	0.54	+1.7
3,087,699	-		DDA3937_RS13550	0.54	+0.8
3,087,719	+		DDA3937_RS13550	0.56	+0.6
3,087,720	-		DDA3937_RS13550	0.56	+1.0
3,087,721	+		DDA3937_RS13550	0.56	+1.5
3,087,721	+				+1.8
3,087,721	+		DDA3937_RS13550	0.56	+1.3
3,087,721	+		DDA3937_RS13550	0.56	+0.6
3,087,721	+		DDA3937_RS13550	0.56	+1.4
3,087,721	+		DDA3937_RS13550	0.56	+0.5
3,087,722	-		DDA3937_RS13550	0.56	+0.7
3,087,722	-				+1.4
3,087,722	-		DDA3937_RS13550	0.56	+0.3
3,087,722	-		DDA3937_RS13550	0.56	+0.1
3,087,722	-		DDA3937_RS13550	0.56	+0.3
3,087,722	-		DDA3937_RS13550	0.56	+2.8
3,087,785	+		DDA3937_RS13550	0.61	+1.9
3,087,785	+		DDA3937_RS13550	0.61	-0.1
3,087,785	+		DDA3937_RS13550	0.61	+2.4
3,087,785	+		DDA3937_RS13550	0.61	+1.8
3,087,786	-		DDA3937_RS13550	0.62	-1.2
3,087,789	+		DDA3937_RS13550	0.62	+2.7
3,087,789	+		DDA3937_RS13550	0.62	+0.5
3,087,790	-		DDA3937_RS13550	0.62	+0.7
3,087,790	-		DDA3937_RS13550	0.62	+0.3
3,087,790	-		DDA3937_RS13550	0.62	+0.4
3,087,829	-		DDA3937_RS13550	0.65	+0.8
3,087,836	+		DDA3937_RS13550	0.66	+1.1
3,087,836	+		DDA3937_RS13550	0.66	+0.1
3,087,837	-		DDA3937_RS13550	0.66	+2.1
3,087,936	+		DDA3937_RS13550	0.75	+1.5
3,087,937	-		DDA3937_RS13550	0.75	+0.0
3,087,937	-		DDA3937_RS13550	0.75	-0.2
3,087,937	-		DDA3937_RS13550	0.75	-2.1
3,088,016	+		DDA3937_RS13550	0.82	+2.1
3,088,016	+		DDA3937_RS13550	0.82	+1.8
3,088,046	-		DDA3937_RS13550	0.85	+2.3
3,088,118	+				-0.0
3,088,119	-				+2.7
3,088,184	+				+1.4
3,088,261	+				-0.5
3,088,262	-				-0.1
3,088,262	-				-0.4
3,088,262	-				-0.5
3,088,267	+				+1.4
3,088,267	+				+1.3
3,088,268	-				+1.6
3,088,309	-		DDA3937_RS13555	0.10	+1.8
3,088,309	-		DDA3937_RS13555	0.10	-0.7
3,088,318	+		DDA3937_RS13555	0.11	+1.6
3,088,319	-		DDA3937_RS13555	0.11	+0.4
3,088,424	+		DDA3937_RS13555	0.23	+2.4
3,088,424	+		DDA3937_RS13555	0.23	+1.2
3,088,424	+		DDA3937_RS13555	0.23	+1.0
3,088,469	-		DDA3937_RS13555	0.28	+0.5
3,088,702	+		DDA3937_RS13555	0.55	+2.2
3,088,736	+		DDA3937_RS13555	0.58	+1.1
3,088,736	+		DDA3937_RS13555	0.58	+1.8
3,088,737	-		DDA3937_RS13555	0.59	+1.7
3,088,737	-		DDA3937_RS13555	0.59	+1.3
3,088,737	-		DDA3937_RS13555	0.59	+2.1
3,088,737	-		DDA3937_RS13555	0.59	+1.6
3,088,737	-		DDA3937_RS13555	0.59	+0.3
3,088,741	+		DDA3937_RS13555	0.59	+1.6
3,088,742	-		DDA3937_RS13555	0.59	+0.3
3,088,743	+		DDA3937_RS13555	0.59	+2.3
3,088,743	+		DDA3937_RS13555	0.59	+1.3
3,088,743	+		DDA3937_RS13555	0.59	+2.0
3,088,743	+		DDA3937_RS13555	0.59	+1.8
3,088,743	+		DDA3937_RS13555	0.59	+2.7
3,088,744	-		DDA3937_RS13555	0.59	+1.0
3,088,744	-		DDA3937_RS13555	0.59	+2.0
3,088,744	-		DDA3937_RS13555	0.59	-0.1
3,088,744	-				-1.7
3,088,744	-		DDA3937_RS13555	0.59	+0.6
3,088,744	-		DDA3937_RS13555	0.59	+1.5
3,088,744	-		DDA3937_RS13555	0.59	+1.5
3,088,744	-		DDA3937_RS13555	0.59	+0.0
3,088,744	-		DDA3937_RS13555	0.59	+1.8
3,088,744	-		DDA3937_RS13555	0.59	+0.5
3,088,744	-		DDA3937_RS13555	0.59	+1.7
3,088,744	-		DDA3937_RS13555	0.59	+2.2
3,088,859	+		DDA3937_RS13555	0.72	+1.4
3,088,860	-		DDA3937_RS13555	0.72	+2.1
3,088,862	+		DDA3937_RS13555	0.73	+1.5
3,088,863	-		DDA3937_RS13555	0.73	+1.8
3,088,881	+		DDA3937_RS13555	0.75	+2.8
3,088,881	+		DDA3937_RS13555	0.75	+2.4
3,088,881	+		DDA3937_RS13555	0.75	+1.8
3,088,882	-		DDA3937_RS13555	0.75	+1.7
3,088,882	-		DDA3937_RS13555	0.75	+2.8
3,088,882	-		DDA3937_RS13555	0.75	+2.5
3,088,882	-		DDA3937_RS13555	0.75	+3.0
3,088,882	-		DDA3937_RS13555	0.75	+1.9
3,088,882	-		DDA3937_RS13555	0.75	+2.5
3,088,883	+		DDA3937_RS13555	0.75	+1.6
3,088,894	+		DDA3937_RS13555	0.76	+2.3
3,088,894	+		DDA3937_RS13555	0.76	+1.3
3,088,894	+		DDA3937_RS13555	0.76	+0.5
3,088,894	+		DDA3937_RS13555	0.76	+2.7
3,088,895	-		DDA3937_RS13555	0.76	-0.6
3,088,960	+		DDA3937_RS13555	0.84	+0.4
3,088,969	+		DDA3937_RS13555	0.85	-0.5
3,088,970	-		DDA3937_RS13555	0.85	+2.7
3,089,019	+				-0.2
3,089,019	+				+2.8
3,089,020	-				+1.9
3,089,020	-				+1.3
3,089,047	+				+1.8
3,089,048	-				+2.1
3,089,063	+				+1.5
3,089,063	+				+1.6
3,089,063	+				+1.9
3,089,063	+				+1.7
3,089,063	+				+1.9
3,089,063	+				+1.3
3,089,064	-				+1.6
3,089,064	-				+2.0
3,089,064	-				+0.2
3,089,072	+				+1.9
3,089,072	+				+2.4
3,089,072	+				+1.3
3,089,073	-				+2.2
3,089,073	-				+1.7
3,089,073	-				+0.7
3,089,073	-				+2.2
3,089,073	-				+2.7
3,089,073	-				+3.0
3,089,075	-				+3.5
3,089,085	+				+2.0
3,089,093	+				+2.0
3,089,093	+				+0.6
3,089,093	+				+2.7
3,089,094	-				+1.8
3,089,094	-				+3.2
3,089,095	+				+2.0
3,089,096	-				+1.4
3,089,117	+				+2.0
3,089,117	+				+2.1
3,089,117	+				+2.3
3,089,118	-				-1.7
3,089,118	-				-1.7
3,089,118	-				-0.0
3,089,118	-				-1.2
3,089,125	-				+0.0
3,089,125	-				-1.3
3,089,147	+				+1.7
3,089,147	+				+1.6
3,089,148	-				-1.3
3,089,148	-				-0.3
3,089,159	+				+4.0
3,089,171	-				+3.1