Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13250

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,022,796	-		DDA3937_RS13240	0.22	+0.3
3,022,823	+		DDA3937_RS13240	0.36	-0.5
3,022,837	-		DDA3937_RS13240	0.44	+0.1
3,022,848	+		DDA3937_RS13240	0.49	-0.5
3,022,849	-		DDA3937_RS13240	0.50	-0.7
3,022,878	+		DDA3937_RS13240	0.66	-0.7
3,022,879	-		DDA3937_RS13240	0.66	-0.7
3,022,879	-		DDA3937_RS13240	0.66	-1.5
3,022,880	+		DDA3937_RS13240	0.67	-2.3
3,022,880	+		DDA3937_RS13240	0.67	-0.0
3,022,881	-		DDA3937_RS13240	0.67	+1.3
3,022,881	-		DDA3937_RS13240	0.67	-0.3
3,022,904	+		DDA3937_RS13240	0.80	+0.1
3,022,943	+				-0.7
3,022,943	+				+1.0
3,022,974	-				+1.4
3,023,045	-				+1.3
3,023,074	+				-0.2
3,023,075	-				-2.3
3,023,075	-				-1.0
3,023,075	-				-1.2
3,023,079	+				+0.7
3,023,079	+				-1.9
3,023,079	+				-0.4
3,023,079	+				-0.4
3,023,080	-				+1.1
3,023,080	-				-0.2
3,023,083	+				+0.8
3,023,083	+				-0.2
3,023,083	+				+0.7
3,023,083	+				+1.8
3,023,083	+				-0.2
3,023,083	+				+0.3
3,023,084	-				+0.3
3,023,084	-				+0.3
3,023,084	-				-0.1
3,023,084	-				+0.3
3,023,084	-				+0.3
3,023,084	-				-0.3
3,023,084	-				-0.4
3,023,084	-				-1.5
3,023,088	+				-1.7
3,023,157	+		DDA3937_RS13245	0.15	+0.3
3,023,157	+		DDA3937_RS13245	0.15	-1.5
3,023,429	+				-1.2
3,023,430	-		DDA3937_RS13245	0.74	+0.2
3,023,502	+		DDA3937_RS13245	0.89	-1.4
3,023,503	-		DDA3937_RS13245	0.89	+0.7
3,023,551	+				-2.3
3,023,663	+				+0.4
3,023,663	+				+0.8
3,023,663	+				-1.5
3,023,663	+				-0.5
3,023,663	+				+0.3
3,023,664	-				-0.4
3,023,664	-				-0.5
3,023,664	-				-0.2
3,023,664	-				-0.3
3,023,664	-				-0.7
3,023,664	-				-2.7
3,023,664	-				-0.5
3,023,700	+				-0.5
3,023,701	-				-2.7
3,023,722	+				-0.4
3,023,722	+				+2.3
3,023,723	-				+0.3
3,023,724	+				-0.3
3,023,724	+				-0.2
3,023,725	-				-0.2
3,023,742	-				-0.2
3,023,758	+				-2.3
3,023,759	-				-0.9
3,023,759	-				-0.3
3,023,759	-				+0.1
3,023,759	-				-0.2
3,023,759	-				-0.1
3,023,759	-				-1.4
3,023,806	+				-0.5
3,023,807	-				-2.3
3,023,807	-				-0.3
3,023,823	+				-1.2
3,023,824	-				-0.4
3,023,935	-		DDA3937_RS13250	0.10	-1.3
3,023,960	+		DDA3937_RS13250	0.11	-1.4
3,024,114	-		DDA3937_RS13250	0.20	-1.4
3,024,161	+		DDA3937_RS13250	0.23	-0.9
3,024,161	+		DDA3937_RS13250	0.23	+1.1
3,024,161	+		DDA3937_RS13250	0.23	-1.3
3,024,161	+		DDA3937_RS13250	0.23	-0.5
3,024,161	+		DDA3937_RS13250	0.23	-0.7
3,024,162	-		DDA3937_RS13250	0.23	-1.0
3,024,162	-		DDA3937_RS13250	0.23	-1.2
3,024,162	-		DDA3937_RS13250	0.23	-1.0
3,024,162	-		DDA3937_RS13250	0.23	-0.4
3,024,162	-		DDA3937_RS13250	0.23	-0.8
3,024,162	-		DDA3937_RS13250	0.23	+0.4
3,024,162	-		DDA3937_RS13250	0.23	-1.3
3,024,297	-		DDA3937_RS13250	0.31	-1.3
3,024,443	+		DDA3937_RS13250	0.39	-0.7
3,024,444	-		DDA3937_RS13250	0.39	-2.0
3,024,444	-		DDA3937_RS13250	0.39	-0.1
3,024,506	+		DDA3937_RS13250	0.43	-0.6
3,024,506	+		DDA3937_RS13250	0.43	+0.3
3,024,506	+		DDA3937_RS13250	0.43	-0.9
3,024,506	+		DDA3937_RS13250	0.43	-0.3
3,024,506	+		DDA3937_RS13250	0.43	+0.0
3,024,506	+		DDA3937_RS13250	0.43	-1.3
3,024,506	+		DDA3937_RS13250	0.43	+0.6
3,024,506	+		DDA3937_RS13250	0.43	-1.7
3,024,506	+		DDA3937_RS13250	0.43	-0.2
3,024,506	+		DDA3937_RS13250	0.43	-0.7
3,024,506	+		DDA3937_RS13250	0.43	-0.7
3,024,506	+		DDA3937_RS13250	0.43	+0.2
3,024,506	+		DDA3937_RS13250	0.43	-1.1
3,024,507	-		DDA3937_RS13250	0.43	-0.4
3,024,507	-		DDA3937_RS13250	0.43	-1.6
3,024,507	-		DDA3937_RS13250	0.43	-0.7
3,024,507	-		DDA3937_RS13250	0.43	+0.4
3,024,507	-		DDA3937_RS13250	0.43	-2.2
3,024,507	-		DDA3937_RS13250	0.43	+1.0
3,024,507	-		DDA3937_RS13250	0.43	-2.0
3,024,507	-		DDA3937_RS13250	0.43	+1.1
3,024,574	+		DDA3937_RS13250	0.47	+1.3
3,024,662	+		DDA3937_RS13250	0.52	-0.6
3,024,662	+		DDA3937_RS13250	0.52	-0.2
3,024,663	-		DDA3937_RS13250	0.52	-0.4
3,024,694	+		DDA3937_RS13250	0.54	+1.2
3,024,694	+		DDA3937_RS13250	0.54	+0.5
3,024,695	-		DDA3937_RS13250	0.54	-1.5
3,024,695	-		DDA3937_RS13250	0.54	-0.2
3,024,697	+		DDA3937_RS13250	0.54	-0.4
3,024,697	+		DDA3937_RS13250	0.54	-1.5
3,024,698	-		DDA3937_RS13250	0.54	-0.0
3,024,698	-		DDA3937_RS13250	0.54	-1.0
3,024,734	+		DDA3937_RS13250	0.56	+0.0
3,024,836	+		DDA3937_RS13250	0.62	+0.3
3,024,836	+		DDA3937_RS13250	0.62	-1.4
3,024,970	+		DDA3937_RS13250	0.70	-0.5
3,024,971	-		DDA3937_RS13250	0.70	-0.7
3,025,035	+		DDA3937_RS13250	0.74	-1.2
3,025,036	-		DDA3937_RS13250	0.74	-1.2
3,025,036	-		DDA3937_RS13250	0.74	-1.3
3,025,049	+		DDA3937_RS13250	0.74	-0.7
3,025,050	-		DDA3937_RS13250	0.74	+1.0
3,025,050	-		DDA3937_RS13250	0.74	-1.2
3,025,221	+		DDA3937_RS13250	0.84	-0.1
3,025,221	+		DDA3937_RS13250	0.84	-1.3
3,025,221	+		DDA3937_RS13250	0.84	-0.2
3,025,221	+		DDA3937_RS13250	0.84	-0.1
3,025,222	-		DDA3937_RS13250	0.84	-2.3
3,025,222	-		DDA3937_RS13250	0.84	-1.0
3,025,336	+				+0.0
3,025,337	-				-1.7
3,025,340	+				-2.2
3,025,340	+				+1.5
3,025,340	+				-1.6
3,025,340	+				-1.5
3,025,340	+				-0.7
3,025,340	+				-1.5
3,025,340	+				-1.7
3,025,340	+				-3.1
3,025,340	+				-1.7
3,025,340	+				-0.1
3,025,340	+				-1.2
3,025,340	+				-0.7
3,025,340	+				-1.2
3,025,340	+				+0.3
3,025,340	+				-0.2
3,025,340	+				-1.1
3,025,340	+				-0.8
3,025,340	+				-1.7
3,025,340	+				-0.9
3,025,340	+				-0.2
3,025,340	+				-0.0
3,025,340	+				-1.0
3,025,340	+				+0.8
3,025,340	+				-0.4
3,025,340	+				+0.6
3,025,340	+				+1.5
3,025,340	+				-2.0
3,025,340	+				-0.6
3,025,340	+				+0.0
3,025,340	+				+0.3
3,025,341	-				-2.1
3,025,341	-				-0.5
3,025,341	-				-0.4
3,025,341	-				-1.7
3,025,341	-				-0.7
3,025,341	-				-0.5
3,025,341	-				-0.2
3,025,341	-				-1.3
3,025,341	-				-0.3
3,025,341	-				+0.0
3,025,341	-				+0.2
3,025,341	-				-1.7
3,025,341	-				-1.0
3,025,341	-				+0.4
3,025,341	-				+0.6
3,025,341	-				-1.5
3,025,341	-				-0.9
3,025,341	-				-0.1
3,025,341	-				+1.3
3,025,341	-				-1.7
3,025,341	-				-0.6
3,025,341	-				-0.5
3,025,341	-				-1.7
3,025,341	-				-0.6
3,025,341	-				+0.4
3,025,341	-				-0.8
3,025,341	-				-0.6
3,025,341	-				+0.3
3,025,341	-				-0.4
3,025,341	-				+0.1
3,025,341	-				-2.5
3,025,341	-				-0.8
3,025,341	-				-0.3
3,025,341	-				+0.3
3,025,347	+				+0.4
3,025,369	-				-2.3
3,025,369	-				-1.2
3,025,378	-				-0.9
3,025,416	+				-0.3
3,025,416	+				+0.3
3,025,417	-				-1.4
3,025,417	-				+0.8
3,026,102	+				-2.3
3,026,102	+				-0.0
3,026,103	-				+0.4
3,026,110	-				-1.5
3,026,120	+				+0.3
3,026,230	+				-1.5
3,026,266	+				+0.8
3,026,266	+				+0.3
3,026,266	+				-0.5
3,026,266	+				-1.2
3,026,266	+				-2.2
3,026,267	-				+0.3
3,026,267	-				-0.3
3,026,267	-				-1.2
3,026,267	-				-0.2
3,026,267	-				+2.0
3,026,267	-				-1.2
3,026,267	-				-0.5
3,026,267	-				+1.1
3,026,267	-				-0.7
3,026,267	-				-0.2
3,026,267	-				+0.4
3,026,267	-				+0.5
3,026,297	+				-0.3
3,026,297	+				+0.1
3,026,297	+				+1.5
3,026,297	+				+0.8
3,026,297	+				+1.6
3,026,298	-				+0.5
3,026,298	-				+0.4
3,026,298	-				-0.9
3,026,298	-				-1.0
3,026,298	-				-0.3
3,026,298	-				-0.6
3,026,298	-				-0.1
3,026,335	+				+0.8
3,026,336	-				-0.7
3,026,336	-				+0.2
3,026,366	+				+0.1
3,026,367	-				-0.2
3,026,367	-				-0.3
3,026,367	-				+0.2
3,026,367	-				+0.6
3,026,367	-				+0.4
3,026,367	-				-0.1
3,026,436	-				-0.9