Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12715

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,889,529	+				-1.1
2,889,693	+				-1.0
2,889,700	-				-1.2
2,889,702	+				-1.1
2,889,820	+				+0.1
2,889,916	+				+1.4
2,889,920	+				+0.1
2,889,921	-				-2.5
2,889,957	+				+0.3
2,889,980	+				+2.1
2,889,981	-				-2.4
2,889,981	-				-0.1
2,889,995	+				-1.2
2,889,995	+				+0.8
2,889,995	+				-0.2
2,889,995	+				-0.6
2,889,996	-				-2.8
2,890,046	+				+0.1
2,890,154	+				-1.2
2,890,154	+				-1.2
2,890,154	+				+1.0
2,890,155	-				+0.6
2,890,155	-				-0.9
2,890,402	-				-0.6
2,890,485	-				+0.9
2,890,504	+				-0.9
2,890,534	+				+0.1
2,890,535	-				-1.0
2,890,535	-				-0.0
2,890,652	+		DDA3937_RS12715	0.13	+1.2
2,890,652	+		DDA3937_RS12715	0.13	+0.1
2,890,653	-		DDA3937_RS12715	0.13	+0.6
2,890,683	-		DDA3937_RS12715	0.15	+1.6
2,890,880	+		DDA3937_RS12715	0.32	-1.7
2,890,904	+		DDA3937_RS12715	0.34	+0.6
2,890,904	+		DDA3937_RS12715	0.34	+0.2
2,890,905	-		DDA3937_RS12715	0.34	+1.6
2,890,905	-		DDA3937_RS12715	0.34	-1.1
2,890,905	-		DDA3937_RS12715	0.34	-0.7
2,890,905	-		DDA3937_RS12715	0.34	-0.7
2,890,905	-		DDA3937_RS12715	0.34	+1.0
2,890,952	-		DDA3937_RS12715	0.38	-0.5
2,891,070	-		DDA3937_RS12715	0.48	-0.6
2,891,134	+		DDA3937_RS12715	0.53	-0.1
2,891,140	+		DDA3937_RS12715	0.54	-0.1
2,891,140	+		DDA3937_RS12715	0.54	+0.1
2,891,140	+		DDA3937_RS12715	0.54	-0.1
2,891,141	-		DDA3937_RS12715	0.54	-1.2
2,891,141	-				+1.4
2,891,141	-		DDA3937_RS12715	0.54	-0.4
2,891,194	+		DDA3937_RS12715	0.58	+1.2
2,891,194	+		DDA3937_RS12715	0.58	-0.4
2,891,194	+		DDA3937_RS12715	0.58	-0.3
2,891,194	+		DDA3937_RS12715	0.58	-0.8
2,891,194	+		DDA3937_RS12715	0.58	+0.3
2,891,194	+		DDA3937_RS12715	0.58	-0.0
2,891,194	+		DDA3937_RS12715	0.58	-0.6
2,891,195	-		DDA3937_RS12715	0.58	-1.5
2,891,195	-		DDA3937_RS12715	0.58	-0.3
2,891,230	+		DDA3937_RS12715	0.61	+0.5
2,891,230	+		DDA3937_RS12715	0.61	+1.5
2,891,231	-		DDA3937_RS12715	0.61	-0.9
2,891,303	+		DDA3937_RS12715	0.68	-0.8
2,891,304	-		DDA3937_RS12715	0.68	+0.8
2,891,304	-		DDA3937_RS12715	0.68	-0.1
2,891,304	-		DDA3937_RS12715	0.68	-0.0
2,891,304	-		DDA3937_RS12715	0.68	-0.6
2,891,372	+		DDA3937_RS12715	0.73	+0.7
2,891,380	+		DDA3937_RS12715	0.74	-0.2
2,891,380	+				+1.9
2,891,380	+		DDA3937_RS12715	0.74	-1.7
2,891,381	-		DDA3937_RS12715	0.74	-0.3
2,891,381	-		DDA3937_RS12715	0.74	-1.4
2,891,387	-		DDA3937_RS12715	0.75	-0.2
2,891,387	-		DDA3937_RS12715	0.75	-0.9
2,891,528	+		DDA3937_RS12715	0.86	+2.4
2,891,528	+		DDA3937_RS12715	0.86	-0.8
2,891,529	-		DDA3937_RS12715	0.87	-0.6
2,891,529	-		DDA3937_RS12715	0.87	-0.1
2,891,529	-		DDA3937_RS12715	0.87	+1.1
2,891,529	-		DDA3937_RS12715	0.87	+0.2
2,891,560	+				+0.2
2,891,638	-				-0.5
2,891,708	+				-0.6
2,891,709	-				+0.8
2,891,715	+				-0.2
2,891,716	-				+0.3
2,891,841	+				-1.4
2,891,841	+				+0.6
2,891,841	+				-1.8
2,891,841	+				+0.3
2,891,841	+				-0.1
2,891,841	+				-1.9
2,891,842	-				-0.2
2,891,842	-				-1.0
2,891,842	-				-0.2
2,891,842	-				+0.4
2,891,842	-				-1.4
2,891,842	-				-0.0
2,891,842	-				+0.4
2,891,842	-				-0.6
2,891,850	+				-0.4
2,891,851	-				-1.6
2,891,851	-				-0.0
2,891,851	-				+0.8
2,891,921	-		DDA3937_RS12720	0.11	+0.1
2,891,923	-		DDA3937_RS12720	0.11	-1.4
2,891,923	-		DDA3937_RS12720	0.11	+0.4
2,891,923	-		DDA3937_RS12720	0.11	+0.6
2,891,940	+		DDA3937_RS12720	0.12	+0.1
2,891,941	-		DDA3937_RS12720	0.12	-0.1
2,891,941	-		DDA3937_RS12720	0.12	-0.3
2,891,959	+		DDA3937_RS12720	0.13	-2.0
2,892,004	-		DDA3937_RS12720	0.16	-0.5
2,892,004	-		DDA3937_RS12720	0.16	-0.5
2,892,004	-		DDA3937_RS12720	0.16	+0.1
2,892,004	-		DDA3937_RS12720	0.16	-1.9
2,892,007	+		DDA3937_RS12720	0.16	-0.1
2,892,007	+		DDA3937_RS12720	0.16	+0.8
2,892,007	+		DDA3937_RS12720	0.16	-1.7
2,892,008	-		DDA3937_RS12720	0.16	-0.6
2,892,008	-		DDA3937_RS12720	0.16	-0.3
2,892,018	+		DDA3937_RS12720	0.17	-0.4
2,892,018	+		DDA3937_RS12720	0.17	-0.5
2,892,018	+		DDA3937_RS12720	0.17	-1.2
2,892,018	+		DDA3937_RS12720	0.17	+0.1
2,892,019	-		DDA3937_RS12720	0.17	-0.4
2,892,019	-		DDA3937_RS12720	0.17	-1.3
2,892,075	+		DDA3937_RS12720	0.20	+0.2
2,892,075	+		DDA3937_RS12720	0.20	-1.0
2,892,075	+		DDA3937_RS12720	0.20	+0.3
2,892,075	+		DDA3937_RS12720	0.20	+0.8
2,892,075	+		DDA3937_RS12720	0.20	-2.1
2,892,075	+		DDA3937_RS12720	0.20	-1.9
2,892,075	+		DDA3937_RS12720	0.20	-0.1
2,892,075	+		DDA3937_RS12720	0.20	+0.4
2,892,076	-		DDA3937_RS12720	0.21	+0.0
2,892,076	-		DDA3937_RS12720	0.21	+0.1
2,892,076	-		DDA3937_RS12720	0.21	-0.2
2,892,081	+		DDA3937_RS12720	0.21	-0.6
2,892,081	+		DDA3937_RS12720	0.21	-0.6
2,892,082	-		DDA3937_RS12720	0.21	+1.1
2,892,102	+		DDA3937_RS12720	0.22	-2.0
2,892,103	-		DDA3937_RS12720	0.22	-0.8
2,892,103	-		DDA3937_RS12720	0.22	-0.9
2,892,141	+		DDA3937_RS12720	0.25	+0.3
2,892,141	+		DDA3937_RS12720	0.25	-1.2
2,892,142	-		DDA3937_RS12720	0.25	+1.2
2,892,142	-		DDA3937_RS12720	0.25	+0.8
2,892,142	-		DDA3937_RS12720	0.25	-0.5
2,892,142	-				-0.2
2,892,142	-		DDA3937_RS12720	0.25	-0.4
2,892,142	-		DDA3937_RS12720	0.25	-0.2
2,892,196	-				+1.4
2,892,198	+		DDA3937_RS12720	0.28	+0.4
2,892,198	+		DDA3937_RS12720	0.28	-0.3
2,892,199	-		DDA3937_RS12720	0.28	-0.7
2,892,199	-		DDA3937_RS12720	0.28	-2.2
2,892,199	-		DDA3937_RS12720	0.28	-1.0
2,892,265	+		DDA3937_RS12720	0.32	-0.5
2,892,265	+		DDA3937_RS12720	0.32	+0.5
2,892,292	+		DDA3937_RS12720	0.34	-0.8
2,892,293	-		DDA3937_RS12720	0.34	-0.9
2,892,360	+		DDA3937_RS12720	0.38	-0.6
2,892,360	+		DDA3937_RS12720	0.38	+1.4
2,892,360	+		DDA3937_RS12720	0.38	+0.4
2,892,361	-		DDA3937_RS12720	0.38	-0.2
2,892,361	-		DDA3937_RS12720	0.38	+1.2
2,892,361	-		DDA3937_RS12720	0.38	+0.3
2,892,415	-		DDA3937_RS12720	0.41	-1.8
2,892,415	-		DDA3937_RS12720	0.41	-0.5
2,892,464	-		DDA3937_RS12720	0.45	+0.0
2,892,464	-		DDA3937_RS12720	0.45	+1.8
2,892,466	-		DDA3937_RS12720	0.45	-0.2
2,892,487	+		DDA3937_RS12720	0.46	+0.4
2,892,501	+		DDA3937_RS12720	0.47	-1.5
2,892,502	-		DDA3937_RS12720	0.47	+0.3
2,892,522	+		DDA3937_RS12720	0.48	-0.2
2,892,522	+		DDA3937_RS12720	0.48	-2.0
2,892,522	+		DDA3937_RS12720	0.48	-1.5
2,892,522	+		DDA3937_RS12720	0.48	-1.3
2,892,522	+		DDA3937_RS12720	0.48	-0.3
2,892,522	+		DDA3937_RS12720	0.48	-0.5
2,892,523	-		DDA3937_RS12720	0.48	+0.3
2,892,648	+		DDA3937_RS12720	0.56	-0.8
2,892,649	-		DDA3937_RS12720	0.56	+0.5
2,892,649	-		DDA3937_RS12720	0.56	+0.1
2,892,649	-		DDA3937_RS12720	0.56	-1.0