Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,870,797	+		DDA3937_RS12615	0.64	-0.0
2,870,798	-		DDA3937_RS12615	0.65	-1.2
2,870,821	+		DDA3937_RS12615	0.67	-1.0
2,870,822	-		DDA3937_RS12615	0.67	+0.6
2,870,822	-		DDA3937_RS12615	0.67	-1.5
2,870,852	-		DDA3937_RS12615	0.70	-1.4
2,870,852	-		DDA3937_RS12615	0.70	-0.3
2,870,852	-		DDA3937_RS12615	0.70	-0.2
2,870,854	+		DDA3937_RS12615	0.70	-2.5
2,870,854	+		DDA3937_RS12615	0.70	-1.1
2,870,854	+		DDA3937_RS12615	0.70	-0.5
2,870,854	+		DDA3937_RS12615	0.70	-1.5
2,870,854	+		DDA3937_RS12615	0.70	-0.1
2,870,855	-		DDA3937_RS12615	0.70	-1.4
2,870,855	-		DDA3937_RS12615	0.70	-1.5
2,870,855	-		DDA3937_RS12615	0.70	-1.1
2,870,855	-		DDA3937_RS12615	0.70	-0.2
2,870,862	+		DDA3937_RS12615	0.71	-0.8
2,870,909	+		DDA3937_RS12615	0.76	-0.7
2,871,013	+		DDA3937_RS12615	0.86	+0.8
2,871,014	-		DDA3937_RS12615	0.86	-0.9
2,871,014	-		DDA3937_RS12615	0.86	-1.0
2,871,014	-		DDA3937_RS12615	0.86	-2.7
2,871,088	+				-1.8
2,871,089	-				-1.2
2,871,103	+				+1.1
2,871,104	-				+1.2
2,871,104	-				-1.2
2,871,255	+				-1.2
2,871,256	-				+0.3
2,871,256	-				-0.8
2,871,376	-				-0.3
2,871,381	+				-1.0
2,871,381	+				-2.4
2,871,394	+				+0.5
2,871,395	-				+0.4
2,871,395	-				+0.3
2,871,468	-				-2.5
2,871,473	-				-0.4
2,871,474	+				-0.7
2,871,475	-				-0.6
2,871,480	+				-0.6
2,871,480	+				-0.7
2,871,480	+				-0.8
2,871,481	-				+1.4
2,871,481	-				-0.3
2,871,481	-				-0.2
2,871,483	+				+0.1
2,871,529	-				-1.0
2,871,529	-				-0.8
2,871,558	+				-0.2
2,871,581	+				+0.2
2,871,581	+				+2.6
2,871,586	+				-0.8
2,871,586	+				+0.5
2,871,586	+				-1.2
2,871,586	+				-0.1
2,871,588	+				+2.3
2,871,589	-				-1.2
2,871,589	-				+0.7
2,871,589	-				+0.4
2,871,627	+				-0.8
2,871,627	+				+0.3
2,871,711	+				-0.7
2,871,711	+				-4.0
2,871,711	+				-1.8
2,871,711	+				-0.2
2,871,715	+				-2.4
2,871,715	+				+0.3
2,871,715	+				-1.5
2,871,715	+				-0.6
2,871,715	+				+1.0
2,871,715	+				+1.7
2,871,715	+				+0.4
2,871,716	-				-0.4
2,871,716	-				-0.1
2,871,735	+				+0.2
2,871,735	+				+0.3
2,871,735	+				-0.6
2,871,735	+				-0.2
2,871,735	+				-1.9
2,871,735	+				+0.2
2,871,735	+				+0.1
2,871,735	+				-1.7
2,871,735	+				-0.5
2,871,735	+				-0.4
2,871,735	+				+0.4
2,871,736	-				-2.9
2,871,766	-				+0.1
2,872,024	-		DDA3937_RS12620	0.25	-0.1
2,872,064	+				-1.5
2,872,065	-		DDA3937_RS12620	0.29	-0.2
2,872,086	+		DDA3937_RS12620	0.31	+0.4
2,872,087	-		DDA3937_RS12620	0.31	-1.2
2,872,087	-				+0.8
2,872,185	-		DDA3937_RS12620	0.41	-0.2
2,872,266	+		DDA3937_RS12620	0.49	+5.4
2,872,267	-				+0.8
2,872,267	-		DDA3937_RS12620	0.49	-2.0
2,872,267	-				-1.5
2,872,282	-				+0.8
2,872,571	+		DDA3937_RS12620	0.78	+0.0
2,872,694	+				+1.0
2,872,783	-				+1.4
2,872,811	+				-0.2
2,872,812	-				+1.4
2,872,812	-				-1.4
2,872,813	+				-0.3
2,872,814	-				-2.2
2,872,814	-				-0.8
2,872,896	+				+3.9
2,872,896	+				-0.5
2,872,896	+				-0.7
2,872,897	-				+0.5
2,872,947	+				-0.4
2,872,947	+				-1.3
2,872,948	-				+3.0
2,872,948	-				-0.8
2,872,948	-				-0.1
2,872,948	-				-1.3
2,872,948	-				-0.2
2,872,948	-				+1.4
2,872,948	-				+1.0
2,872,948	-				-1.8
2,872,974	+				-0.2
2,872,974	+				-0.8
2,872,974	+				+0.7
2,872,974	+				-0.5
2,872,974	+				-1.2
2,872,974	+				-2.4
2,872,974	+				-0.0
2,872,974	+				-1.3
2,872,975	-				+0.2
2,872,978	+				+0.2
2,873,022	+				-1.1
2,873,023	-				+0.4
2,873,024	+				-1.0
2,873,031	+				+0.0
2,873,032	-				-1.7
2,873,044	-				+2.4
2,873,054	+				+1.4
2,873,067	-				-0.5
2,873,165	+				-0.4
2,873,165	+				-0.1
2,873,165	+				-1.2
2,873,166	-				+2.1
2,873,166	-				+0.0
2,873,200	+				-0.5
2,873,211	+				+0.1
2,873,211	+				+1.4
2,873,211	+				-1.2
2,873,219	+				-0.4
2,873,219	+				+0.3
2,873,220	-				+1.0
2,873,224	+				-0.3
2,873,224	+				-0.2
2,873,224	+				-1.1
2,873,225	-				+1.8
2,873,225	-				-0.8
2,873,225	-				-0.3
2,873,247	+				-0.7
2,873,247	+				+0.0
2,873,247	+				-2.5
2,873,247	+				-0.0
2,873,247	+				+0.6
2,873,247	+				+0.2
2,873,247	+				-0.7
2,873,247	+				-0.8
2,873,248	-				+0.2
2,873,248	-				-1.4
2,873,248	-				-0.3
2,873,248	-				-0.4
2,873,248	-				+0.3
2,873,248	-				+1.0
2,873,252	+				-0.9
2,873,252	+				+0.3
2,873,252	+				+0.5
2,873,253	-				+0.0
2,873,253	-				+0.1
2,873,350	+		DDA3937_RS12625	0.12	-0.4
2,873,350	+		DDA3937_RS12625	0.12	-0.3
2,873,350	+		DDA3937_RS12625	0.12	-1.1
2,873,350	+		DDA3937_RS12625	0.12	-1.2
2,873,351	-		DDA3937_RS12625	0.12	-0.2
2,873,360	+		DDA3937_RS12625	0.13	-0.5
2,873,360	+		DDA3937_RS12625	0.13	+0.8
2,873,360	+		DDA3937_RS12625	0.13	+0.2
2,873,360	+		DDA3937_RS12625	0.13	+0.0
2,873,361	-		DDA3937_RS12625	0.13	-0.3
2,873,361	-		DDA3937_RS12625	0.13	+0.1
2,873,361	-		DDA3937_RS12625	0.13	+0.1
2,873,364	-		DDA3937_RS12625	0.13	-1.2
2,873,364	-		DDA3937_RS12625	0.13	+0.0
2,873,364	-		DDA3937_RS12625	0.13	+0.1
2,873,364	-				+0.8
2,873,364	-		DDA3937_RS12625	0.13	-0.4
2,873,379	-		DDA3937_RS12625	0.14	+0.4
2,873,395	+		DDA3937_RS12625	0.16	-1.7
2,873,395	+		DDA3937_RS12625	0.16	+0.3
2,873,396	-		DDA3937_RS12625	0.16	-1.5
2,873,397	+		DDA3937_RS12625	0.16	+1.1
2,873,397	+		DDA3937_RS12625	0.16	-1.0
2,873,398	-		DDA3937_RS12625	0.16	-0.9
2,873,433	-		DDA3937_RS12625	0.19	+0.3
2,873,433	-		DDA3937_RS12625	0.19	+0.3
2,873,451	-		DDA3937_RS12625	0.21	-0.8
2,873,493	+		DDA3937_RS12625	0.24	+0.2
2,873,493	+		DDA3937_RS12625	0.24	+0.9
2,873,493	+		DDA3937_RS12625	0.24	+0.4
2,873,494	-		DDA3937_RS12625	0.24	-1.3
2,873,494	-		DDA3937_RS12625	0.24	+0.3
2,873,570	-		DDA3937_RS12625	0.31	+0.4
2,873,570	-		DDA3937_RS12625	0.31	+0.5
2,873,570	-		DDA3937_RS12625	0.31	+1.8
2,873,611	+		DDA3937_RS12625	0.34	+1.8
2,873,611	+		DDA3937_RS12625	0.34	+0.1
2,873,611	+		DDA3937_RS12625	0.34	-0.1
2,873,612	-		DDA3937_RS12625	0.34	+0.2
2,873,620	+		DDA3937_RS12625	0.35	+0.6
2,873,620	+		DDA3937_RS12625	0.35	+0.3
2,873,620	+		DDA3937_RS12625	0.35	+2.4
2,873,620	+		DDA3937_RS12625	0.35	+0.5
2,873,620	+		DDA3937_RS12625	0.35	+0.6
2,873,621	-		DDA3937_RS12625	0.35	+0.7
2,873,621	-		DDA3937_RS12625	0.35	-1.2
2,873,621	-		DDA3937_RS12625	0.35	-0.7
2,873,621	-		DDA3937_RS12625	0.35	-0.4
2,873,621	-		DDA3937_RS12625	0.35	-0.2
2,873,621	-		DDA3937_RS12625	0.35	-0.2
2,873,621	-		DDA3937_RS12625	0.35	+0.2
2,873,621	-		DDA3937_RS12625	0.35	-1.4
2,873,621	-		DDA3937_RS12625	0.35	+1.0