Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12290

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,794,766	+		DDA3937_RS12285	0.81	+0.3
2,794,766	+		DDA3937_RS12285	0.81	-0.3
2,794,767	-		DDA3937_RS12285	0.81	-0.3
2,794,767	-		DDA3937_RS12285	0.81	-1.4
2,794,850	-		DDA3937_RS12285	0.84	+1.1
2,794,850	-		DDA3937_RS12285	0.84	+0.1
2,794,865	+		DDA3937_RS12285	0.85	-1.8
2,794,865	+		DDA3937_RS12285	0.85	-2.7
2,794,866	-		DDA3937_RS12285	0.85	-0.2
2,794,866	-		DDA3937_RS12285	0.85	+0.5
2,794,866	-				-0.3
2,794,866	-		DDA3937_RS12285	0.85	-0.3
2,794,866	-		DDA3937_RS12285	0.85	+1.0
2,794,924	+		DDA3937_RS12285	0.87	+4.0
2,794,925	-		DDA3937_RS12285	0.87	-1.3
2,794,925	-		DDA3937_RS12285	0.87	-2.1
2,795,139	+				-1.8
2,795,262	+				+0.2
2,795,263	-				-0.3
2,795,290	+				+1.5
2,795,290	+				-1.3
2,795,290	+				+0.9
2,795,291	-				+0.1
2,795,322	-				+1.6
2,795,405	+				-1.6
2,795,406	-				-0.4
2,795,486	+				-1.1
2,795,486	+				-0.4
2,795,486	+				-0.3
2,795,486	+				-0.8
2,795,486	+				-1.8
2,795,487	-				-0.1
2,795,487	-				+0.4
2,795,487	-				+4.1
2,795,498	+				-0.5
2,795,508	+				-0.8
2,795,519	+				+0.6
2,795,520	-				+0.5
2,795,520	-				-1.2
2,795,576	-				+1.5
2,795,652	+				+0.3
2,795,652	+				-0.3
2,795,653	-				+2.2
2,795,653	-				-0.2
2,795,653	-				+0.7
2,795,653	-				+0.6
2,795,722	-		DDA3937_RS12290	0.10	-1.1
2,795,724	+		DDA3937_RS12290	0.10	-0.2
2,795,724	+		DDA3937_RS12290	0.10	-0.8
2,795,724	+		DDA3937_RS12290	0.10	+0.2
2,795,725	-		DDA3937_RS12290	0.10	+0.2
2,795,725	-		DDA3937_RS12290	0.10	+0.7
2,795,725	-		DDA3937_RS12290	0.10	+1.0
2,795,725	-		DDA3937_RS12290	0.10	-0.3
2,795,742	+		DDA3937_RS12290	0.12	+0.9
2,795,743	-		DDA3937_RS12290	0.12	+0.5
2,795,776	-		DDA3937_RS12290	0.14	+0.2
2,795,780	+		DDA3937_RS12290	0.14	+1.3
2,795,780	+		DDA3937_RS12290	0.14	+0.4
2,795,781	-		DDA3937_RS12290	0.14	-0.8
2,795,781	-		DDA3937_RS12290	0.14	-1.0
2,795,839	+		DDA3937_RS12290	0.18	-0.2
2,795,893	+		DDA3937_RS12290	0.21	-0.5
2,795,893	+		DDA3937_RS12290	0.21	+0.0
2,795,894	-		DDA3937_RS12290	0.21	+2.0
2,795,894	-		DDA3937_RS12290	0.21	+0.5
2,795,894	-		DDA3937_RS12290	0.21	+1.1
2,796,010	+		DDA3937_RS12290	0.29	-0.5
2,796,076	+		DDA3937_RS12290	0.33	+0.3
2,796,076	+		DDA3937_RS12290	0.33	-0.4
2,796,377	+		DDA3937_RS12290	0.52	-0.8
2,796,377	+		DDA3937_RS12290	0.52	-0.2
2,796,377	+		DDA3937_RS12290	0.52	-2.4
2,796,378	-		DDA3937_RS12290	0.52	+0.9
2,796,378	-		DDA3937_RS12290	0.52	-1.3
2,796,378	-				-0.3
2,796,567	-		DDA3937_RS12290	0.65	+0.3
2,796,567	-		DDA3937_RS12290	0.65	-2.4
2,796,685	-		DDA3937_RS12290	0.72	+1.6
2,796,685	-		DDA3937_RS12290	0.72	-1.6
2,796,764	+		DDA3937_RS12290	0.77	+0.5
2,796,764	+		DDA3937_RS12290	0.77	+0.6
2,796,765	-		DDA3937_RS12290	0.77	-1.6
2,796,765	-		DDA3937_RS12290	0.77	+0.2
2,796,765	-		DDA3937_RS12290	0.77	+1.2
2,796,765	-		DDA3937_RS12290	0.77	-0.6
2,796,902	+		DDA3937_RS12290	0.86	-0.3
2,796,902	+		DDA3937_RS12290	0.86	-1.3
2,796,902	+		DDA3937_RS12290	0.86	+0.5
2,796,902	+		DDA3937_RS12290	0.86	+1.0
2,796,903	-		DDA3937_RS12290	0.86	+0.8
2,796,994	-				+0.2
2,796,994	-				-0.9
2,797,018	-				-1.3
2,797,154	+				-1.1
2,797,155	-				+1.2
2,797,155	-				-1.0
2,797,216	-				-1.0
2,797,253	+				+0.8
2,797,254	-				-1.1
2,797,258	+				+0.4
2,797,258	+				+0.4
2,797,258	+				+0.1
2,797,258	+				-0.8
2,797,258	+				+0.3
2,797,258	+				-0.3
2,797,259	-				-2.2
2,797,259	-				-0.8
2,797,259	-				-0.4
2,797,259	-				-0.2
2,797,259	-				+0.0
2,797,283	+				-1.4
2,797,283	+				-0.8
2,797,283	+				-1.2
2,797,283	+				+0.2
2,797,284	-				+0.2
2,797,284	-				+0.5
2,797,284	-				+0.4
2,797,303	+				-0.6
2,797,304	-				-1.2
2,797,338	+				+1.0
2,797,338	+				-0.2
2,797,339	-				+0.4
2,797,339	-				+0.7
2,797,353	+				+0.1
2,797,354	-				-1.3
2,797,365	+				+0.4
2,797,366	-				+0.2
2,797,366	-				+0.7
2,797,396	-				-0.4
2,797,534	+		DDA3937_RS12295	0.21	-0.1
2,797,534	+		DDA3937_RS12295	0.21	-0.5
2,797,534	+		DDA3937_RS12295	0.21	-1.0
2,797,534	+		DDA3937_RS12295	0.21	-0.4
2,797,535	-		DDA3937_RS12295	0.21	+0.3
2,797,535	-		DDA3937_RS12295	0.21	+5.2
2,797,535	-		DDA3937_RS12295	0.21	-0.4
2,797,559	+		DDA3937_RS12295	0.24	+0.9
2,797,560	-		DDA3937_RS12295	0.24	-0.7
2,797,560	-		DDA3937_RS12295	0.24	-1.3
2,797,749	+		DDA3937_RS12295	0.43	+0.4
2,797,749	+		DDA3937_RS12295	0.43	-0.1
2,797,749	+		DDA3937_RS12295	0.43	-0.3
2,797,749	+		DDA3937_RS12295	0.43	-1.6
2,797,749	+		DDA3937_RS12295	0.43	+0.7
2,797,749	+		DDA3937_RS12295	0.43	-0.1
2,797,749	+				+0.7
2,797,750	-		DDA3937_RS12295	0.43	-0.6
2,797,750	-		DDA3937_RS12295	0.43	-0.3
2,797,750	-		DDA3937_RS12295	0.43	-0.4
2,797,771	+		DDA3937_RS12295	0.45	-0.3
2,797,771	+		DDA3937_RS12295	0.45	-1.4
2,797,771	+		DDA3937_RS12295	0.45	+1.2
2,797,771	+		DDA3937_RS12295	0.45	-0.2
2,797,857	-		DDA3937_RS12295	0.54	-0.5
2,797,857	-		DDA3937_RS12295	0.54	-1.3
2,797,884	+		DDA3937_RS12295	0.56	-0.4
2,797,884	+		DDA3937_RS12295	0.56	-0.3
2,797,884	+		DDA3937_RS12295	0.56	+0.7
2,797,884	+		DDA3937_RS12295	0.56	+0.9
2,797,885	-		DDA3937_RS12295	0.57	+0.9
2,797,885	-		DDA3937_RS12295	0.57	-1.2
2,797,905	+		DDA3937_RS12295	0.59	-0.2
2,797,905	+		DDA3937_RS12295	0.59	-0.6
2,797,906	-		DDA3937_RS12295	0.59	-1.6
2,797,906	-		DDA3937_RS12295	0.59	+2.0
2,798,015	+		DDA3937_RS12295	0.70	+0.7
2,798,016	-		DDA3937_RS12295	0.70	-2.7
2,798,016	-		DDA3937_RS12295	0.70	-0.6
2,798,100	+		DDA3937_RS12295	0.78	-0.8