Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11680

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS11675 and DDA3937_RS11680 overlap by 14 nucleotidesDDA3937_RS11680 and DDA3937_RS11685 overlap by 4 nucleotidesDDA3937_RS11685 and DDA3937_RS11690 overlap by 4 nucleotides DDA3937_RS11675: DDA3937_RS11675 - type III secretion system ATPase SctN, at 2,655,409 to 2,656,788 _RS11675 DDA3937_RS11680: DDA3937_RS11680 - hypothetical protein, at 2,656,775 to 2,657,254 _RS11680 DDA3937_RS11685: DDA3937_RS11685 - HrpP protein, at 2,657,251 to 2,657,775 _RS11685 DDA3937_RS11690: DDA3937_RS11690 - FliM/FliN family flagellar motor switch protein, at 2,657,772 to 2,658,920 _RS11690 Position (kb) 2656 2657 2658Strain fitness (log2 ratio) -2 -1 0 1at 2655.822 kb on + strand, within DDA3937_RS11675at 2655.823 kb on - strand, within DDA3937_RS11675at 2656.321 kb on + strand, within DDA3937_RS11675at 2656.321 kb on + strand, within DDA3937_RS11675at 2656.322 kb on - strand, within DDA3937_RS11675at 2656.387 kb on + strand, within DDA3937_RS11675at 2656.388 kb on - strand, within DDA3937_RS11675at 2656.603 kb on + strand, within DDA3937_RS11675at 2656.604 kb on - strand, within DDA3937_RS11675at 2656.775 kb on - strandat 2656.775 kb on - strandat 2657.014 kb on + strandat 2657.015 kb on - strand, within DDA3937_RS11680at 2657.092 kb on + strand, within DDA3937_RS11680at 2657.093 kb on - strand, within DDA3937_RS11680at 2657.093 kb on - strand, within DDA3937_RS11680at 2657.144 kb on + strand, within DDA3937_RS11680at 2657.144 kb on + strand, within DDA3937_RS11680at 2657.144 kb on + strand, within DDA3937_RS11680at 2657.145 kb on - strand, within DDA3937_RS11680at 2657.145 kb on - strand, within DDA3937_RS11680at 2657.250 kb on + strandat 2657.672 kb on - strand, within DDA3937_RS11685at 2657.672 kb on - strand, within DDA3937_RS11685at 2657.672 kb on - strand, within DDA3937_RS11685at 2657.744 kb on + strandat 2657.744 kb on + strandat 2657.789 kb on + strandat 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.069 kb on + strand, within DDA3937_RS11690at 2658.070 kb on - strand, within DDA3937_RS11690at 2658.070 kb on - strand, within DDA3937_RS11690at 2658.070 kb on - strand, within DDA3937_RS11690at 2658.070 kb on - strand, within DDA3937_RS11690at 2658.070 kb on - strand, within DDA3937_RS11690at 2658.070 kb on - strand, within DDA3937_RS11690

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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2,655,822 + DDA3937_RS11675 0.30 -0.5
2,655,823 - DDA3937_RS11675 0.30 -1.3
2,656,321 + DDA3937_RS11675 0.66 -0.5
2,656,321 + DDA3937_RS11675 0.66 -0.8
2,656,322 - DDA3937_RS11675 0.66 +0.5
2,656,387 + DDA3937_RS11675 0.71 +0.4
2,656,388 - DDA3937_RS11675 0.71 +0.7
2,656,603 + DDA3937_RS11675 0.87 +0.2
2,656,604 - DDA3937_RS11675 0.87 -0.5
2,656,775 - -0.3
2,656,775 - +0.5
2,657,014 + -0.9
2,657,015 - DDA3937_RS11680 0.50 +0.3
2,657,092 + DDA3937_RS11680 0.66 +0.1
2,657,093 - DDA3937_RS11680 0.66 -0.3
2,657,093 - DDA3937_RS11680 0.66 -2.1
2,657,144 + DDA3937_RS11680 0.77 +0.5
2,657,144 + DDA3937_RS11680 0.77 -0.3
2,657,144 + DDA3937_RS11680 0.77 +1.6
2,657,145 - DDA3937_RS11680 0.77 -0.1
2,657,145 - DDA3937_RS11680 0.77 +1.2
2,657,250 + +0.1
2,657,672 - DDA3937_RS11685 0.80 -1.8
2,657,672 - DDA3937_RS11685 0.80 +0.0
2,657,672 - DDA3937_RS11685 0.80 -0.6
2,657,744 + +0.1
2,657,744 + -0.3
2,657,789 + -0.1
2,658,069 + DDA3937_RS11690 0.26 -0.9
2,658,069 + DDA3937_RS11690 0.26 -0.5
2,658,069 + DDA3937_RS11690 0.26 -1.1
2,658,069 + DDA3937_RS11690 0.26 +0.4
2,658,069 + DDA3937_RS11690 0.26 +0.2
2,658,069 + DDA3937_RS11690 0.26 -0.6
2,658,069 + DDA3937_RS11690 0.26 -1.6
2,658,069 + DDA3937_RS11690 0.26 -0.2
2,658,069 + DDA3937_RS11690 0.26 +0.1
2,658,069 + DDA3937_RS11690 0.26 -0.3
2,658,069 + DDA3937_RS11690 0.26 +0.3
2,658,069 + DDA3937_RS11690 0.26 -0.3
2,658,069 + DDA3937_RS11690 0.26 -0.3
2,658,069 + DDA3937_RS11690 0.26 -0.1
2,658,069 + DDA3937_RS11690 0.26 +0.7
2,658,069 + DDA3937_RS11690 0.26 +0.2
2,658,069 + DDA3937_RS11690 0.26 -1.1
2,658,070 - DDA3937_RS11690 0.26 -0.3
2,658,070 - DDA3937_RS11690 0.26 -1.9
2,658,070 - DDA3937_RS11690 0.26 +1.4
2,658,070 - DDA3937_RS11690 0.26 +0.3
2,658,070 - DDA3937_RS11690 0.26 +0.7
2,658,070 - DDA3937_RS11690 0.26 -0.4

Or see this region's nucleotide sequence