Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09750

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,199,373	+				-0.2
2,199,402	-				+0.2
2,199,556	+		DDA3937_RS09745	0.23	+1.2
2,199,556	+		DDA3937_RS09745	0.23	-0.6
2,199,556	+		DDA3937_RS09745	0.23	-0.7
2,199,556	+		DDA3937_RS09745	0.23	-1.6
2,199,556	+		DDA3937_RS09745	0.23	-0.2
2,199,557	-		DDA3937_RS09745	0.24	-0.9
2,199,557	-		DDA3937_RS09745	0.24	+0.5
2,199,589	+		DDA3937_RS09745	0.27	+0.8
2,199,625	-		DDA3937_RS09745	0.32	+1.8
2,199,687	+				+0.3
2,199,815	+		DDA3937_RS09745	0.55	+0.6
2,199,816	-		DDA3937_RS09745	0.55	+1.3
2,199,816	-		DDA3937_RS09745	0.55	+0.7
2,199,956	+		DDA3937_RS09745	0.72	-1.1
2,199,956	+		DDA3937_RS09745	0.72	-0.5
2,199,956	+		DDA3937_RS09745	0.72	-0.6
2,199,956	+		DDA3937_RS09745	0.72	+0.0
2,199,957	-		DDA3937_RS09745	0.72	+0.8
2,199,957	-		DDA3937_RS09745	0.72	-1.0
2,199,957	-		DDA3937_RS09745	0.72	-0.2
2,199,957	-		DDA3937_RS09745	0.72	+0.5
2,199,993	+		DDA3937_RS09745	0.77	+0.3
2,199,993	+		DDA3937_RS09745	0.77	-0.5
2,199,994	-		DDA3937_RS09745	0.77	+1.3
2,200,109	-				+0.4
2,200,182	+				-0.2
2,200,207	+				-0.4
2,200,207	+				-0.8
2,200,210	+				-1.9
2,200,226	+				+0.4
2,200,240	+				-0.9
2,200,240	+				+0.4
2,200,240	+				-0.2
2,200,241	-				+0.7
2,200,376	+				+0.8
2,200,376	+				-0.6
2,200,376	+				-0.5
2,200,377	-				-0.4
2,200,377	-				+0.8
2,200,380	+				-0.8
2,200,380	+				+0.2
2,200,662	-		DDA3937_RS09750	0.17	-0.6
2,200,799	+		DDA3937_RS09750	0.24	-0.9
2,200,799	+		DDA3937_RS09750	0.24	-1.4
2,200,799	+		DDA3937_RS09750	0.24	+0.6
2,200,800	-		DDA3937_RS09750	0.24	-1.8
2,200,898	+		DDA3937_RS09750	0.29	-1.4
2,200,899	-		DDA3937_RS09750	0.29	+0.4
2,200,919	+		DDA3937_RS09750	0.30	-1.2
2,200,919	+		DDA3937_RS09750	0.30	+0.3
2,200,919	+		DDA3937_RS09750	0.30	-1.6
2,200,919	+		DDA3937_RS09750	0.30	-1.2
2,200,920	-		DDA3937_RS09750	0.30	+0.3
2,200,920	-		DDA3937_RS09750	0.30	-1.1
2,201,298	+		DDA3937_RS09750	0.49	+0.6
2,201,298	+		DDA3937_RS09750	0.49	-1.0
2,201,299	-		DDA3937_RS09750	0.49	-1.2
2,201,387	+		DDA3937_RS09750	0.54	-0.8
2,201,388	-		DDA3937_RS09750	0.54	-1.6
2,201,389	+		DDA3937_RS09750	0.54	+0.3
2,201,389	+		DDA3937_RS09750	0.54	-1.8
2,201,389	+		DDA3937_RS09750	0.54	-0.2
2,201,390	-		DDA3937_RS09750	0.54	-1.4
2,201,390	-		DDA3937_RS09750	0.54	-0.8
2,201,441	+		DDA3937_RS09750	0.56	+0.8
2,201,441	+		DDA3937_RS09750	0.56	-0.7
2,201,442	-		DDA3937_RS09750	0.56	+1.2
2,201,442	-		DDA3937_RS09750	0.56	+0.6
2,201,523	-		DDA3937_RS09750	0.61	-1.8
2,201,581	+		DDA3937_RS09750	0.64	-0.1
2,201,581	+		DDA3937_RS09750	0.64	+1.6
2,201,602	+		DDA3937_RS09750	0.65	-0.1
2,201,615	-		DDA3937_RS09750	0.65	-0.4
2,201,615	-		DDA3937_RS09750	0.65	-1.0
2,201,678	-		DDA3937_RS09750	0.68	-2.7
2,201,678	-		DDA3937_RS09750	0.68	-1.8
2,201,752	+		DDA3937_RS09750	0.72	+0.3
2,201,782	+		DDA3937_RS09750	0.74	+0.1
2,201,783	-				-0.2
2,201,783	-		DDA3937_RS09750	0.74	+0.4
2,201,783	-		DDA3937_RS09750	0.74	-1.7
2,201,806	+				-0.6
2,201,806	+		DDA3937_RS09750	0.75	+0.3
2,201,807	-		DDA3937_RS09750	0.75	-1.6
2,201,883	+		DDA3937_RS09750	0.79	-1.0
2,201,884	-		DDA3937_RS09750	0.79	-0.1
2,201,980	+		DDA3937_RS09750	0.84	-2.0
2,201,981	-		DDA3937_RS09750	0.84	-0.1
2,201,981	-		DDA3937_RS09750	0.84	-0.0
2,201,981	-		DDA3937_RS09750	0.84	-1.7
2,202,088	+				-0.2
2,202,089	-		DDA3937_RS09750	0.89	-1.0
2,202,089	-				+0.8
2,202,089	-		DDA3937_RS09750	0.89	-0.5
2,202,089	-		DDA3937_RS09750	0.89	+0.0
2,202,089	-		DDA3937_RS09750	0.89	+0.9
2,202,094	+		DDA3937_RS09750	0.90	-0.1
2,202,094	+		DDA3937_RS09750	0.90	+0.5
2,202,095	-		DDA3937_RS09750	0.90	+0.6
2,202,142	+				+0.3
2,202,142	+				-0.2
2,202,163	+				+0.0
2,202,163	+				-0.5
2,202,164	-				-0.8
2,202,164	-				+1.2
2,202,164	-				-1.2
2,202,189	+				-0.2
2,202,190	-				-0.6
2,202,231	+				-0.6
2,202,231	+				-0.2
2,202,232	-				-0.0
2,202,302	+				-1.1
2,202,302	+				-1.8
2,202,303	-				+0.2
2,202,315	-				-0.1
2,202,315	-				-0.7
2,202,315	-				+0.8
2,202,319	+				-0.5
2,202,333	+				+0.1
2,202,367	+				-0.7
2,202,368	-				-0.4
2,202,368	-				-0.8
2,202,395	+				+0.2
2,202,395	+				+1.0
2,202,396	-				+0.1
2,202,416	-				-0.2
2,202,426	-				-0.8
2,202,431	+				-1.6
2,202,431	+				+0.8
2,202,432	-				+1.0
2,202,432	-				+0.2
2,202,435	+				-0.1
2,202,435	+				-0.5
2,202,435	+				-2.8
2,202,436	-				-0.2
2,202,436	-				-0.1
2,202,436	-				+0.4
2,202,497	+				+0.3
2,202,497	+				-0.5
2,202,497	+				+2.2
2,202,498	-				-0.2
2,202,498	-				-0.6
2,202,535	+				-1.4
2,202,535	+				-0.2
2,202,536	-				+0.1
2,202,536	-				-1.6
2,202,593	-				-0.6
2,202,643	-				-0.7
2,202,683	+				-0.2
2,202,683	+				-2.4
2,202,683	+				-0.2
2,202,683	+				-1.5
2,202,684	-				+0.6
2,202,684	-				-1.6
2,202,684	-				-1.2
2,202,720	+		DDA3937_RS09755	0.14	-1.6
2,202,720	+		DDA3937_RS09755	0.14	-0.9
2,202,721	-		DDA3937_RS09755	0.14	+2.0
2,202,770	+		DDA3937_RS09755	0.21	+0.8
2,202,770	+		DDA3937_RS09755	0.21	-0.2
2,202,770	+		DDA3937_RS09755	0.21	+0.3
2,202,868	+		DDA3937_RS09755	0.34	-0.5
2,202,890	+		DDA3937_RS09755	0.37	+3.8
2,202,891	-		DDA3937_RS09755	0.37	+0.8
2,202,891	-		DDA3937_RS09755	0.37	-0.4
2,202,921	+		DDA3937_RS09755	0.41	+1.2
2,202,922	-		DDA3937_RS09755	0.42	-0.1
2,202,922	-		DDA3937_RS09755	0.42	-0.2
2,202,925	+		DDA3937_RS09755	0.42	+0.5
2,202,925	+		DDA3937_RS09755	0.42	-2.7
2,202,926	-		DDA3937_RS09755	0.42	-1.1
2,202,926	-		DDA3937_RS09755	0.42	-0.7
2,202,926	-		DDA3937_RS09755	0.42	-0.3
2,202,926	-		DDA3937_RS09755	0.42	-0.2
2,202,982	-		DDA3937_RS09755	0.50	+0.0
2,203,002	+		DDA3937_RS09755	0.53	-1.8
2,203,003	-		DDA3937_RS09755	0.53	-0.6
2,203,003	-		DDA3937_RS09755	0.53	-0.8
2,203,039	+		DDA3937_RS09755	0.58	-2.4
2,203,039	+				-1.8
2,203,039	+		DDA3937_RS09755	0.58	+0.8
2,203,039	+		DDA3937_RS09755	0.58	-2.2
2,203,039	+		DDA3937_RS09755	0.58	-0.8
2,203,040	-		DDA3937_RS09755	0.58	-1.9
2,203,040	-		DDA3937_RS09755	0.58	-0.9
2,203,040	-		DDA3937_RS09755	0.58	-0.0
2,203,040	-		DDA3937_RS09755	0.58	-0.2
2,203,137	+		DDA3937_RS09755	0.71	-1.1
2,203,137	+		DDA3937_RS09755	0.71	-0.5
2,203,137	+		DDA3937_RS09755	0.71	+0.1
2,203,138	-		DDA3937_RS09755	0.71	-0.2
2,203,138	-		DDA3937_RS09755	0.71	-0.9
2,203,138	-		DDA3937_RS09755	0.71	+0.1
2,203,167	+		DDA3937_RS09755	0.75	-0.9
2,203,167	+		DDA3937_RS09755	0.75	-1.2
2,203,167	+		DDA3937_RS09755	0.75	+0.8
2,203,168	-		DDA3937_RS09755	0.75	+0.8
2,203,168	-		DDA3937_RS09755	0.75	+0.8
2,203,186	+		DDA3937_RS09755	0.78	-0.5
2,203,243	+		DDA3937_RS09755	0.86	-0.2
2,203,259	-		DDA3937_RS09755	0.88	-1.2