Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09700

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,190,027	+		DDA3937_RS09695	0.56	-0.0
2,190,027	+		DDA3937_RS09695	0.56	-2.1
2,190,027	+		DDA3937_RS09695	0.56	-2.3
2,190,027	+		DDA3937_RS09695	0.56	-1.3
2,190,027	+		DDA3937_RS09695	0.56	+0.3
2,190,027	+		DDA3937_RS09695	0.56	-0.3
2,190,027	+		DDA3937_RS09695	0.56	+0.5
2,190,028	-		DDA3937_RS09695	0.56	+1.4
2,190,028	-		DDA3937_RS09695	0.56	+0.2
2,190,028	-		DDA3937_RS09695	0.56	+0.9
2,190,085	+		DDA3937_RS09695	0.59	+1.0
2,190,100	-		DDA3937_RS09695	0.60	+1.6
2,190,165	+		DDA3937_RS09695	0.64	-1.3
2,190,165	+		DDA3937_RS09695	0.64	+1.5
2,190,165	+		DDA3937_RS09695	0.64	-3.0
2,190,165	+		DDA3937_RS09695	0.64	-1.3
2,190,166	-		DDA3937_RS09695	0.64	+3.2
2,190,193	+		DDA3937_RS09695	0.65	+0.3
2,190,287	-		DDA3937_RS09695	0.70	-0.3
2,190,381	-		DDA3937_RS09695	0.75	-0.8
2,190,381	-		DDA3937_RS09695	0.75	-1.3
2,190,410	+		DDA3937_RS09695	0.76	-0.9
2,190,424	-		DDA3937_RS09695	0.77	-0.1
2,190,493	-		DDA3937_RS09695	0.81	+1.2
2,190,652	+		DDA3937_RS09695	0.89	+0.7
2,190,653	-		DDA3937_RS09695	0.89	-0.2
2,190,653	-		DDA3937_RS09695	0.89	+0.8
2,190,751	+				-1.0
2,190,752	-				-0.9
2,190,772	-				-0.9
2,190,860	-				-0.4
2,190,872	+				-3.1
2,190,873	-				+0.4
2,190,873	-				-2.3
2,190,873	-				-1.0
2,190,873	-				-0.3
2,190,882	+				+2.7
2,190,883	-				-0.2
2,190,898	-				-0.5
2,190,898	-				-0.2
2,190,898	-				-2.4
2,190,905	+				+0.6
2,190,906	-				-0.6
2,190,906	-				-0.1
2,190,927	-				+0.7
2,190,939	+				-1.3
2,190,939	+				+0.2
2,190,944	-				-0.4
2,190,944	-				-0.4
2,190,944	-				+1.0
2,191,011	-				+1.4
2,191,011	-				+0.0
2,191,065	+		DDA3937_RS09700	0.12	+0.2
2,191,065	+		DDA3937_RS09700	0.12	-0.5
2,191,066	-		DDA3937_RS09700	0.12	-1.0
2,191,069	+		DDA3937_RS09700	0.12	-0.5
2,191,083	+		DDA3937_RS09700	0.14	+0.2
2,191,083	+		DDA3937_RS09700	0.14	-0.6
2,191,083	+		DDA3937_RS09700	0.14	+2.2
2,191,084	-		DDA3937_RS09700	0.15	-1.6
2,191,084	-		DDA3937_RS09700	0.15	+0.7
2,191,086	-		DDA3937_RS09700	0.15	-1.6
2,191,086	-		DDA3937_RS09700	0.15	-1.7
2,191,086	-		DDA3937_RS09700	0.15	-0.1
2,191,170	+		DDA3937_RS09700	0.28	-0.1
2,191,204	+		DDA3937_RS09700	0.33	+0.9
2,191,209	+		DDA3937_RS09700	0.34	+0.5
2,191,250	+		DDA3937_RS09700	0.41	-1.2
2,191,251	-				+0.5
2,191,254	+		DDA3937_RS09700	0.41	-0.8
2,191,254	+		DDA3937_RS09700	0.41	-0.8
2,191,262	+		DDA3937_RS09700	0.43	-0.5
2,191,266	+		DDA3937_RS09700	0.43	-2.4
2,191,266	+		DDA3937_RS09700	0.43	-2.3
2,191,266	+		DDA3937_RS09700	0.43	-1.6
2,191,267	-		DDA3937_RS09700	0.43	+0.7
2,191,267	-		DDA3937_RS09700	0.43	-1.3
2,191,267	-		DDA3937_RS09700	0.43	-0.3
2,191,269	-		DDA3937_RS09700	0.44	-0.1
2,191,278	+				+0.7
2,191,278	+				+0.7
2,191,279	-		DDA3937_RS09700	0.45	-0.9
2,191,279	-		DDA3937_RS09700	0.45	-2.6
2,191,279	-		DDA3937_RS09700	0.45	-1.1
2,191,279	-		DDA3937_RS09700	0.45	-0.5
2,191,279	-		DDA3937_RS09700	0.45	+0.4
2,191,320	+		DDA3937_RS09700	0.52	+0.6
2,191,320	+		DDA3937_RS09700	0.52	-1.1
2,191,320	+		DDA3937_RS09700	0.52	-0.4
2,191,321	-		DDA3937_RS09700	0.52	-0.5
2,191,321	-		DDA3937_RS09700	0.52	-1.8
2,191,321	-		DDA3937_RS09700	0.52	+0.2
2,191,321	-				-0.8
2,191,322	+		DDA3937_RS09700	0.52	-2.8
2,191,322	+		DDA3937_RS09700	0.52	-2.0
2,191,322	+		DDA3937_RS09700	0.52	-0.6
2,191,322	+		DDA3937_RS09700	0.52	-0.1
2,191,322	+		DDA3937_RS09700	0.52	-0.6
2,191,323	-		DDA3937_RS09700	0.52	+1.1
2,191,323	-		DDA3937_RS09700	0.52	-0.3
2,191,323	-		DDA3937_RS09700	0.52	+0.2
2,191,323	-		DDA3937_RS09700	0.52	-0.4
2,191,346	+		DDA3937_RS09700	0.56	-0.6
2,191,363	-		DDA3937_RS09700	0.58	+0.9
2,191,376	+		DDA3937_RS09700	0.61	-1.6
2,191,376	+		DDA3937_RS09700	0.61	-0.1
2,191,376	+		DDA3937_RS09700	0.61	+1.7
2,191,376	+		DDA3937_RS09700	0.61	+0.0
2,191,377	-		DDA3937_RS09700	0.61	-0.2
2,191,377	-		DDA3937_RS09700	0.61	-1.5
2,191,377	-		DDA3937_RS09700	0.61	-1.1
2,191,377	-				-0.3
2,191,377	-		DDA3937_RS09700	0.61	-0.4
2,191,377	-		DDA3937_RS09700	0.61	-1.1
2,191,377	-		DDA3937_RS09700	0.61	-0.8
2,191,377	-		DDA3937_RS09700	0.61	-0.8
2,191,377	-		DDA3937_RS09700	0.61	-0.1
2,191,377	-		DDA3937_RS09700	0.61	-2.4
2,191,377	-		DDA3937_RS09700	0.61	+1.3
2,191,377	-		DDA3937_RS09700	0.61	-1.0
2,191,431	+		DDA3937_RS09700	0.69	-2.0
2,191,431	+		DDA3937_RS09700	0.69	-1.4
2,191,431	+				+0.7
2,191,432	-		DDA3937_RS09700	0.69	-1.1
2,191,463	-		DDA3937_RS09700	0.74	-2.4
2,191,478	+		DDA3937_RS09700	0.77	-0.6
2,191,478	+		DDA3937_RS09700	0.77	+0.4
2,191,479	-		DDA3937_RS09700	0.77	-2.1
2,191,479	-		DDA3937_RS09700	0.77	+0.0
2,191,479	-		DDA3937_RS09700	0.77	+0.5
2,191,497	+		DDA3937_RS09700	0.80	-1.4
2,191,501	-		DDA3937_RS09700	0.80	+0.6
2,191,589	-				-0.3
2,191,604	+				-0.7
2,191,604	+				+0.1
2,191,604	+				+0.0
2,191,627	-				+0.2
2,191,656	+				+0.1
2,191,738	-				-2.2
2,191,738	-				-0.1
2,191,944	+		DDA3937_RS09705	0.11	-1.3
2,191,945	-		DDA3937_RS09705	0.11	-0.3
2,191,945	-		DDA3937_RS09705	0.11	-1.1
2,191,957	+		DDA3937_RS09705	0.13	-0.6
2,191,957	+		DDA3937_RS09705	0.13	-1.3
2,191,957	+		DDA3937_RS09705	0.13	-0.4
2,192,075	-		DDA3937_RS09705	0.33	-0.3
2,192,090	-		DDA3937_RS09705	0.35	+1.1
2,192,115	-		DDA3937_RS09705	0.39	+1.1
2,192,300	+		DDA3937_RS09705	0.69	-0.9
2,192,300	+		DDA3937_RS09705	0.69	-3.3
2,192,318	+		DDA3937_RS09705	0.72	+0.1
2,192,319	-		DDA3937_RS09705	0.72	-0.1
2,192,319	-		DDA3937_RS09705	0.72	-0.5
2,192,321	+		DDA3937_RS09705	0.73	-1.8
2,192,321	+		DDA3937_RS09705	0.73	+1.1
2,192,330	-		DDA3937_RS09705	0.74	+1.6
2,192,330	-		DDA3937_RS09705	0.74	-0.2
2,192,383	+		DDA3937_RS09705	0.83	+0.1
2,192,384	-		DDA3937_RS09705	0.83	+0.7