Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08060

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,825,841	+				+1.0
1,825,841	+				-1.5
1,825,841	+				-1.5
1,825,841	+				-1.2
1,825,842	-				-1.0
1,825,842	-				-1.9
1,825,842	-				+0.1
1,825,842	-				+0.3
1,825,842	-				-1.3
1,825,950	+		DDA3937_RS08055	0.19	-0.6
1,826,022	+		DDA3937_RS08055	0.27	+0.6
1,826,022	+		DDA3937_RS08055	0.27	-1.1
1,826,023	-		DDA3937_RS08055	0.27	-0.5
1,826,023	-		DDA3937_RS08055	0.27	+0.3
1,826,148	-		DDA3937_RS08055	0.41	-0.2
1,826,232	-		DDA3937_RS08055	0.50	+2.0
1,826,232	-		DDA3937_RS08055	0.50	-0.1
1,826,279	+		DDA3937_RS08055	0.55	+1.1
1,826,310	+		DDA3937_RS08055	0.58	-1.3
1,826,310	+		DDA3937_RS08055	0.58	-0.5
1,826,313	+		DDA3937_RS08055	0.59	+0.1
1,826,361	+		DDA3937_RS08055	0.64	+0.4
1,826,361	+		DDA3937_RS08055	0.64	-0.8
1,826,361	+				+0.9
1,826,361	+		DDA3937_RS08055	0.64	+2.9
1,826,361	+		DDA3937_RS08055	0.64	+0.5
1,826,361	+		DDA3937_RS08055	0.64	-0.5
1,826,362	-		DDA3937_RS08055	0.64	+0.2
1,826,362	-		DDA3937_RS08055	0.64	+0.2
1,826,466	-		DDA3937_RS08055	0.75	+0.1
1,826,472	+		DDA3937_RS08055	0.76	+0.1
1,826,473	-		DDA3937_RS08055	0.76	-0.7
1,826,473	-		DDA3937_RS08055	0.76	-0.9
1,826,568	+		DDA3937_RS08055	0.86	+0.9
1,826,568	+		DDA3937_RS08055	0.86	-0.4
1,826,568	+		DDA3937_RS08055	0.86	-0.0
1,826,569	-		DDA3937_RS08055	0.86	-0.2
1,826,675	+				-0.3
1,826,675	+				-2.1
1,827,150	+		DDA3937_RS08060	0.25	-0.5
1,827,212	+		DDA3937_RS08060	0.29	-0.4
1,827,213	-		DDA3937_RS08060	0.29	+0.2
1,827,242	+		DDA3937_RS08060	0.30	-0.7
1,827,243	-		DDA3937_RS08060	0.30	-0.3
1,827,243	-		DDA3937_RS08060	0.30	+0.2
1,827,264	-		DDA3937_RS08060	0.32	-0.7
1,827,290	+		DDA3937_RS08060	0.33	+1.9
1,827,290	+		DDA3937_RS08060	0.33	+0.2
1,827,291	-		DDA3937_RS08060	0.33	-1.3
1,827,384	+		DDA3937_RS08060	0.38	-1.9
1,827,384	+		DDA3937_RS08060	0.38	+1.1
1,827,384	+		DDA3937_RS08060	0.38	+0.3
1,827,384	+		DDA3937_RS08060	0.38	-0.7
1,827,385	-		DDA3937_RS08060	0.38	-0.4
1,827,385	-		DDA3937_RS08060	0.38	-0.1
1,827,385	-		DDA3937_RS08060	0.38	-1.7
1,827,385	-		DDA3937_RS08060	0.38	-1.4
1,827,425	-		DDA3937_RS08060	0.41	+0.1
1,827,425	-		DDA3937_RS08060	0.41	-0.5
1,827,425	-		DDA3937_RS08060	0.41	-0.1
1,827,447	+		DDA3937_RS08060	0.42	+0.2
1,827,447	+		DDA3937_RS08060	0.42	+0.6
1,827,683	+		DDA3937_RS08060	0.55	+2.5
1,827,683	+		DDA3937_RS08060	0.55	+0.6
1,827,684	-		DDA3937_RS08060	0.55	-0.8
1,828,063	+		DDA3937_RS08060	0.76	+0.2
1,828,064	-		DDA3937_RS08060	0.76	-0.2
1,828,197	+				+1.4
1,828,198	-		DDA3937_RS08060	0.84	+0.9
1,828,198	-		DDA3937_RS08060	0.84	-0.3
1,828,198	-		DDA3937_RS08060	0.84	-0.1
1,828,260	+		DDA3937_RS08060	0.87	-0.1
1,828,260	+		DDA3937_RS08060	0.87	+0.1
1,828,260	+		DDA3937_RS08060	0.87	+4.3
1,828,260	+		DDA3937_RS08060	0.87	-0.8
1,828,260	+		DDA3937_RS08060	0.87	-1.9
1,828,260	+		DDA3937_RS08060	0.87	-2.2
1,828,260	+		DDA3937_RS08060	0.87	-0.5
1,828,260	+		DDA3937_RS08060	0.87	-0.1
1,828,260	+		DDA3937_RS08060	0.87	+0.6
1,828,260	+		DDA3937_RS08060	0.87	-0.5
1,828,260	+		DDA3937_RS08060	0.87	-0.5
1,828,261	-		DDA3937_RS08060	0.87	-0.7
1,828,261	-		DDA3937_RS08060	0.87	+0.8
1,828,323	+				-1.0
1,828,402	+				-0.8
1,828,402	+				-1.1
1,828,403	-				+0.3
1,828,403	-				-0.3
1,828,428	+				+0.2
1,828,428	+				+0.6
1,828,428	+				-0.9
1,828,480	+				-0.1
1,828,480	+				-1.6
1,828,480	+				+0.4
1,828,480	+				-0.8
1,828,480	+				-0.2
1,828,481	-				-0.9
1,828,481	-				+0.5
1,828,481	-				-1.1
1,828,481	-				-0.7
1,828,481	-				-1.1
1,828,483	+				-0.6
1,828,536	+				+0.9
1,828,536	+				-1.1
1,828,536	+				+0.4
1,828,536	+				+0.4
1,828,537	-				+1.9
1,828,537	-				+1.0
1,828,539	+				+0.4
1,828,539	+				+0.1
1,828,539	+				+0.2
1,828,540	-				+0.7
1,828,540	-				+0.4
1,828,540	-				+0.9
1,828,542	+				+0.6
1,828,542	+				-0.1
1,828,542	+				+1.2
1,828,542	+				-0.1
1,828,542	+				-0.6
1,828,543	-				+0.3
1,828,543	-				-0.9
1,828,543	-				-0.6
1,828,543	-				-0.1
1,828,543	-				-0.1
1,828,543	-				-0.2
1,828,543	-				+1.2
1,828,543	-				-0.0
1,828,543	-				+0.4
1,828,543	-				-0.8
1,828,545	+				-1.0
1,828,545	+				-1.5
1,828,545	+				-2.1
1,828,545	+				-1.0
1,828,545	+				-0.5
1,828,546	-				-1.3
1,828,546	-				+0.4
1,828,546	-				+1.1
1,828,546	-				-1.1
1,828,546	-				-0.3
1,828,546	-				-0.5
1,828,548	+				-0.3
1,828,548	+				-0.7
1,828,549	-				-0.3
1,828,549	-				-0.5
1,828,549	-				+0.4
1,828,549	-				-2.7
1,828,549	-				+0.2
1,828,549	-				+0.9
1,828,551	+				-1.9
1,828,551	+				-1.5
1,828,551	+				-2.5
1,828,552	-				-0.6
1,828,552	-				-0.6
1,828,552	-				-0.9
1,828,552	-				-0.4
1,828,552	-				+0.3
1,828,552	-				-0.4
1,828,554	+				+0.7
1,828,554	+				+3.0
1,828,554	+				-0.7
1,828,554	+				+0.1
1,828,554	+				-1.9
1,828,554	+				-1.5
1,828,555	-				-1.1
1,828,555	-				-0.5
1,828,555	-				+1.0
1,828,557	+				+0.1
1,828,557	+				-1.8
1,828,557	+				-0.9
1,828,557	+				-0.8
1,828,557	+				-0.9
1,828,557	+				-0.9
1,828,557	+				-1.3
1,828,558	-				+0.9
1,828,558	-				-0.5
1,828,558	-				+0.9
1,828,558	-				+0.9
1,828,558	-				-0.7
1,828,558	-				+0.8
1,828,560	+				+0.1
1,828,560	+				+2.4
1,828,561	-				+0.1
1,828,563	+				-1.7
1,828,563	+				+0.6
1,828,563	+				-0.1
1,828,563	+				+0.2
1,828,564	-				+0.3
1,828,577	+				-0.3
1,828,578	-				-1.6
1,828,790	-		DDA3937_RS08065	0.21	-0.5
1,828,918	+		DDA3937_RS08065	0.35	+0.2
1,828,919	-		DDA3937_RS08065	0.35	+0.9
1,828,921	-		DDA3937_RS08065	0.35	-0.9
1,828,927	+		DDA3937_RS08065	0.35	-1.1
1,828,928	-		DDA3937_RS08065	0.36	+0.4
1,829,165	-		DDA3937_RS08065	0.61	+0.5
1,829,165	-		DDA3937_RS08065	0.61	-1.6
1,829,165	-		DDA3937_RS08065	0.61	-0.1
1,829,175	+		DDA3937_RS08065	0.62	-0.3
1,829,175	+		DDA3937_RS08065	0.62	-1.0
1,829,176	-		DDA3937_RS08065	0.62	-0.5
1,829,176	-		DDA3937_RS08065	0.62	-0.5
1,829,191	+		DDA3937_RS08065	0.64	-1.0
1,829,199	+		DDA3937_RS08065	0.64	-0.9
1,829,272	+		DDA3937_RS08065	0.72	-0.1
1,829,272	+		DDA3937_RS08065	0.72	+0.2
1,829,272	+		DDA3937_RS08065	0.72	-0.7
1,829,470	+				-0.2
1,829,470	+				+0.5
1,829,470	+				-0.4
1,829,470	+				-0.4
1,829,470	+				-0.3
1,829,470	+				-0.0
1,829,471	-				+0.9
1,829,471	-				-1.1
1,829,471	-				+2.4