Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,818,077	+				-0.4
1,818,077	+				+1.0
1,818,077	+				+0.8
1,818,078	-				+0.6
1,818,078	-				-0.9
1,818,078	-				+0.5
1,818,133	+				-0.0
1,818,133	+				+0.6
1,818,133	+				-2.4
1,818,134	-				+0.3
1,818,242	+		DDA3937_RS08020	0.17	-1.3
1,818,243	-		DDA3937_RS08020	0.17	-1.2
1,818,275	+		DDA3937_RS08020	0.22	+0.9
1,818,275	+		DDA3937_RS08020	0.22	-3.0
1,818,275	+		DDA3937_RS08020	0.22	-0.8
1,818,275	+		DDA3937_RS08020	0.22	-0.3
1,818,276	-		DDA3937_RS08020	0.22	+2.0
1,818,276	-		DDA3937_RS08020	0.22	+0.5
1,818,341	+		DDA3937_RS08020	0.30	-0.6
1,818,342	-		DDA3937_RS08020	0.30	-0.9
1,818,444	+		DDA3937_RS08020	0.44	+0.1
1,818,445	-		DDA3937_RS08020	0.44	-2.8
1,818,445	-		DDA3937_RS08020	0.44	+0.9
1,818,445	-		DDA3937_RS08020	0.44	-2.4
1,818,445	-		DDA3937_RS08020	0.44	+0.4
1,818,445	-		DDA3937_RS08020	0.44	+0.3
1,818,450	+		DDA3937_RS08020	0.44	+1.3
1,818,451	-		DDA3937_RS08020	0.45	-0.2
1,818,451	-		DDA3937_RS08020	0.45	-0.6
1,818,476	+		DDA3937_RS08020	0.48	-0.1
1,818,476	+		DDA3937_RS08020	0.48	+0.3
1,818,572	+		DDA3937_RS08020	0.60	-0.2
1,818,572	+		DDA3937_RS08020	0.60	-0.1
1,818,588	+		DDA3937_RS08020	0.62	+0.6
1,818,723	+		DDA3937_RS08020	0.80	-0.6
1,818,860	+				-0.1
1,818,860	+				-0.8
1,818,861	-				-0.4
1,818,861	-				+0.6
1,818,861	-				+0.6
1,818,871	+				-1.1
1,818,871	+				-1.2
1,818,871	+				-0.8
1,818,872	-				+0.3
1,818,978	+				-0.8
1,819,005	+				-0.1
1,819,005	+				+0.2
1,819,006	-				-0.0
1,819,016	+				+1.2
1,819,016	+				-0.4
1,819,016	+				-1.0
1,819,017	-				-0.1
1,819,017	-				-0.3
1,819,017	-				-0.5
1,819,153	+		DDA3937_RS08025	0.10	+0.6
1,819,163	+		DDA3937_RS08025	0.11	-0.7
1,819,164	-		DDA3937_RS08025	0.11	-0.1
1,819,227	+		DDA3937_RS08025	0.18	+1.4
1,819,252	+		DDA3937_RS08025	0.21	+1.0
1,819,253	-		DDA3937_RS08025	0.21	-0.2
1,819,380	+		DDA3937_RS08025	0.35	-0.6
1,819,381	-		DDA3937_RS08025	0.35	-0.7
1,819,388	+		DDA3937_RS08025	0.36	-0.1
1,819,510	-		DDA3937_RS08025	0.50	+1.1
1,819,510	-		DDA3937_RS08025	0.50	-0.7
1,819,519	-		DDA3937_RS08025	0.51	-0.7
1,819,532	+		DDA3937_RS08025	0.52	-0.8
1,819,532	+		DDA3937_RS08025	0.52	+1.5
1,819,533	-		DDA3937_RS08025	0.52	-0.5
1,819,533	-		DDA3937_RS08025	0.52	-1.1
1,819,533	-		DDA3937_RS08025	0.52	-2.3
1,819,584	+		DDA3937_RS08025	0.58	-1.7
1,819,584	+		DDA3937_RS08025	0.58	+1.1
1,819,584	+		DDA3937_RS08025	0.58	-1.0
1,819,584	+		DDA3937_RS08025	0.58	-0.7
1,819,585	-		DDA3937_RS08025	0.58	-0.5
1,819,585	-		DDA3937_RS08025	0.58	-2.4
1,819,683	+		DDA3937_RS08025	0.69	+1.4
1,819,739	+		DDA3937_RS08025	0.75	-0.5
1,819,740	-		DDA3937_RS08025	0.75	-0.4
1,819,740	-		DDA3937_RS08025	0.75	-0.2
1,819,740	-		DDA3937_RS08025	0.75	-0.1
1,819,767	+		DDA3937_RS08025	0.78	+0.5
1,819,767	+		DDA3937_RS08025	0.78	-0.7
1,819,768	-		DDA3937_RS08025	0.78	-0.7
1,819,768	-		DDA3937_RS08025	0.78	-0.5
1,819,768	-		DDA3937_RS08025	0.78	+2.6
1,819,819	+		DDA3937_RS08025	0.84	-0.7
1,819,820	-		DDA3937_RS08025	0.84	-2.3
1,819,875	+				+1.3
1,819,875	+				-0.5
1,819,876	-				-0.7
1,819,876	-				-0.2
1,819,884	+				-0.9
1,819,945	+				+1.2
1,819,946	-				-0.1
1,819,953	+				-0.1
1,819,962	+				+0.6
1,819,962	+				+0.2
1,819,963	-				-0.8
1,819,963	-				-0.3
1,819,963	-				-0.5
1,819,963	-				-0.4
1,819,963	-				-1.1
1,819,963	-				-0.6
1,819,986	-				+1.0
1,820,025	+				+0.3
1,820,036	+				-0.5
1,820,036	+				-2.1
1,820,036	+				-0.4
1,820,036	+				+0.3
1,820,036	+				+0.0
1,820,036	+				-1.9
1,820,036	+				-2.3
1,820,037	-				-0.1
1,820,037	-				+1.2
1,820,037	-				-0.3
1,820,037	-				+0.3
1,820,037	-				-2.5
1,820,037	-				+0.4
1,820,055	+				-0.2
1,820,067	+				+0.8
1,820,067	+				+1.7
1,820,116	+				+0.7
1,820,116	+				+0.3
1,820,124	+				+0.1
1,820,125	-				+0.1
1,820,125	-				-1.7
1,820,125	-				-0.2
1,820,125	-				+2.9
1,820,142	+				+0.9
1,820,142	+				-0.0
1,820,142	+				+0.1
1,820,142	+				-0.5
1,820,143	-				+0.2
1,820,143	-				+0.0
1,820,241	-				-0.3
1,820,241	-				-0.1
1,820,241	-				+0.1
1,820,241	-				-1.0
1,820,257	+				-0.7
1,820,317	+				+0.9
1,820,318	-		DDA3937_RS08030	0.12	-0.8
1,820,371	+		DDA3937_RS08030	0.16	-0.6
1,820,371	+		DDA3937_RS08030	0.16	-0.5
1,820,371	+		DDA3937_RS08030	0.16	+0.2
1,820,371	+		DDA3937_RS08030	0.16	-0.1
1,820,371	+				-1.7
1,820,372	-		DDA3937_RS08030	0.16	-0.7
1,820,372	-		DDA3937_RS08030	0.16	+0.7
1,820,414	-		DDA3937_RS08030	0.19	-1.9
1,820,481	-		DDA3937_RS08030	0.23	-2.4
1,820,489	+		DDA3937_RS08030	0.23	+0.6
1,820,489	+		DDA3937_RS08030	0.23	+2.3
1,820,489	+		DDA3937_RS08030	0.23	+0.0
1,820,490	-		DDA3937_RS08030	0.23	-1.0
1,820,644	+		DDA3937_RS08030	0.33	-0.3
1,820,652	+				+2.7
1,820,652	+		DDA3937_RS08030	0.34	+0.2
1,820,652	+				+1.3
1,820,652	+		DDA3937_RS08030	0.34	+4.3
1,820,652	+		DDA3937_RS08030	0.34	-0.3
1,820,652	+		DDA3937_RS08030	0.34	+0.0
1,820,652	+		DDA3937_RS08030	0.34	-0.1
1,820,652	+		DDA3937_RS08030	0.34	+0.7
1,820,653	-		DDA3937_RS08030	0.34	+1.6
1,820,653	-		DDA3937_RS08030	0.34	+0.6
1,820,653	-		DDA3937_RS08030	0.34	-0.1
1,820,653	-		DDA3937_RS08030	0.34	-0.6
1,820,653	-		DDA3937_RS08030	0.34	-0.6
1,820,684	+		DDA3937_RS08030	0.36	-1.9
1,820,684	+		DDA3937_RS08030	0.36	-0.4
1,820,684	+		DDA3937_RS08030	0.36	-0.4
1,820,684	+		DDA3937_RS08030	0.36	+1.6
1,820,685	-		DDA3937_RS08030	0.36	-1.2
1,820,685	-		DDA3937_RS08030	0.36	-0.6
1,820,686	+		DDA3937_RS08030	0.36	+0.4
1,820,686	+		DDA3937_RS08030	0.36	-0.6
1,820,726	+		DDA3937_RS08030	0.39	-1.1
1,820,726	+		DDA3937_RS08030	0.39	-0.8
1,820,727	-		DDA3937_RS08030	0.39	-0.2
1,820,912	+		DDA3937_RS08030	0.51	+0.1
1,820,912	+		DDA3937_RS08030	0.51	-0.6
1,820,913	-		DDA3937_RS08030	0.51	-0.5
1,820,913	-		DDA3937_RS08030	0.51	-0.1
1,820,913	-		DDA3937_RS08030	0.51	+2.1