Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS07400 and DDA3937_RS07405 are separated by 91 nucleotides DDA3937_RS07405 and DDA3937_RS07410 are separated by 34 nucleotides
DDA3937_RS07400: DDA3937_RS07400 - formate hydrogenlyase transcriptional activator FlhA, at 1,670,761 to 1,672,938
_RS07400
DDA3937_RS07405: DDA3937_RS07405 - formate dehydrogenase subunit alpha, at 1,673,030 to 1,675,180
_RS07405
DDA3937_RS07410: DDA3937_RS07410 - 4Fe-4S dicluster domain-containing protein, at 1,675,215 to 1,675,757
_RS07410
Position (kb) 1673
1674
1675
1676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1672.084 kb on - strand, within DDA3937_RS07400 at 1672.084 kb on - strand, within DDA3937_RS07400 at 1672.084 kb on - strand, within DDA3937_RS07400 at 1672.096 kb on - strand, within DDA3937_RS07400 at 1672.096 kb on - strand, within DDA3937_RS07400 at 1672.096 kb on - strand, within DDA3937_RS07400 at 1672.096 kb on - strand, within DDA3937_RS07400 at 1672.100 kb on + strand, within DDA3937_RS07400 at 1672.183 kb on - strand, within DDA3937_RS07400 at 1672.414 kb on + strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.415 kb on - strand, within DDA3937_RS07400 at 1672.473 kb on + strand, within DDA3937_RS07400 at 1672.473 kb on + strand, within DDA3937_RS07400 at 1672.794 kb on + strand at 1672.794 kb on + strand at 1672.794 kb on + strand at 1672.795 kb on - strand at 1672.795 kb on - strand at 1672.795 kb on - strand at 1672.795 kb on - strand at 1672.795 kb on - strand at 1672.795 kb on - strand at 1672.795 kb on - strand at 1672.866 kb on + strand at 1672.866 kb on + strand at 1672.875 kb on + strand at 1672.875 kb on + strand at 1672.875 kb on + strand at 1672.875 kb on + strand at 1672.875 kb on + strand at 1672.875 kb on + strand at 1672.876 kb on - strand at 1672.876 kb on - strand at 1672.876 kb on - strand at 1672.876 kb on - strand at 1672.876 kb on - strand at 1672.890 kb on + strand at 1672.890 kb on + strand at 1672.890 kb on + strand at 1672.890 kb on + strand at 1672.891 kb on - strand at 1672.891 kb on - strand at 1672.891 kb on - strand at 1672.891 kb on - strand at 1672.891 kb on - strand at 1672.891 kb on - strand at 1672.891 kb on - strand at 1673.031 kb on + strand at 1673.053 kb on + strand at 1673.079 kb on + strand at 1673.079 kb on + strand at 1673.080 kb on - strand at 1673.080 kb on - strand at 1673.087 kb on + strand at 1673.088 kb on - strand at 1673.094 kb on + strand at 1673.095 kb on - strand at 1673.095 kb on - strand at 1673.095 kb on - strand at 1673.151 kb on + strand at 1673.151 kb on + strand at 1673.151 kb on + strand at 1673.223 kb on + strand at 1673.223 kb on + strand at 1673.223 kb on + strand at 1673.223 kb on + strand at 1673.223 kb on + strand at 1673.224 kb on - strand at 1673.224 kb on - strand at 1673.224 kb on - strand at 1673.224 kb on - strand at 1673.224 kb on - strand at 1673.224 kb on - strand at 1673.224 kb on - strand at 1673.232 kb on + strand at 1673.233 kb on - strand at 1673.233 kb on - strand at 1673.365 kb on - strand, within DDA3937_RS07405 at 1673.427 kb on + strand, within DDA3937_RS07405 at 1673.428 kb on - strand, within DDA3937_RS07405 at 1673.607 kb on + strand, within DDA3937_RS07405 at 1673.607 kb on + strand, within DDA3937_RS07405 at 1673.608 kb on - strand, within DDA3937_RS07405 at 1673.632 kb on - strand, within DDA3937_RS07405 at 1673.632 kb on - strand, within DDA3937_RS07405 at 1673.636 kb on - strand, within DDA3937_RS07405 at 1673.644 kb on - strand, within DDA3937_RS07405 at 1673.646 kb on + strand, within DDA3937_RS07405 at 1673.646 kb on + strand, within DDA3937_RS07405 at 1673.646 kb on + strand, within DDA3937_RS07405 at 1673.698 kb on - strand, within DDA3937_RS07405 at 1673.784 kb on + strand, within DDA3937_RS07405 at 1673.784 kb on + strand, within DDA3937_RS07405 at 1673.784 kb on + strand, within DDA3937_RS07405 at 1673.817 kb on + strand, within DDA3937_RS07405 at 1673.818 kb on - strand, within DDA3937_RS07405 at 1673.818 kb on - strand, within DDA3937_RS07405 at 1673.818 kb on - strand, within DDA3937_RS07405 at 1673.985 kb on + strand, within DDA3937_RS07405 at 1673.985 kb on + strand, within DDA3937_RS07405 at 1673.986 kb on - strand, within DDA3937_RS07405 at 1674.167 kb on + strand, within DDA3937_RS07405 at 1674.168 kb on - strand, within DDA3937_RS07405 at 1674.168 kb on - strand, within DDA3937_RS07405 at 1674.168 kb on - strand, within DDA3937_RS07405 at 1674.327 kb on + strand, within DDA3937_RS07405 at 1674.328 kb on - strand, within DDA3937_RS07405 at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.331 kb on + strand at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.331 kb on + strand, within DDA3937_RS07405 at 1674.332 kb on - strand, within DDA3937_RS07405 at 1674.332 kb on - strand, within DDA3937_RS07405 at 1674.332 kb on - strand, within DDA3937_RS07405 at 1674.384 kb on + strand, within DDA3937_RS07405 at 1674.384 kb on + strand, within DDA3937_RS07405 at 1674.385 kb on - strand, within DDA3937_RS07405 at 1674.385 kb on - strand, within DDA3937_RS07405 at 1674.396 kb on + strand, within DDA3937_RS07405 at 1674.417 kb on + strand, within DDA3937_RS07405 at 1674.417 kb on + strand, within DDA3937_RS07405 at 1674.418 kb on - strand, within DDA3937_RS07405 at 1674.436 kb on + strand, within DDA3937_RS07405 at 1674.460 kb on + strand, within DDA3937_RS07405 at 1674.462 kb on + strand, within DDA3937_RS07405 at 1674.462 kb on + strand, within DDA3937_RS07405 at 1674.463 kb on - strand, within DDA3937_RS07405 at 1674.463 kb on - strand, within DDA3937_RS07405 at 1674.463 kb on - strand, within DDA3937_RS07405 at 1674.463 kb on - strand, within DDA3937_RS07405 at 1674.657 kb on + strand, within DDA3937_RS07405 at 1674.658 kb on - strand, within DDA3937_RS07405 at 1674.658 kb on - strand, within DDA3937_RS07405 at 1674.707 kb on - strand, within DDA3937_RS07405 at 1674.707 kb on - strand, within DDA3937_RS07405 at 1674.707 kb on - strand, within DDA3937_RS07405 at 1674.731 kb on + strand, within DDA3937_RS07405 at 1674.784 kb on + strand, within DDA3937_RS07405 at 1674.785 kb on - strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.828 kb on + strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1674.829 kb on - strand, within DDA3937_RS07405 at 1675.042 kb on - strand at 1675.042 kb on - strand at 1675.129 kb on + strand at 1675.129 kb on + strand at 1675.152 kb on + strand at 1675.152 kb on + strand at 1675.152 kb on + strand at 1675.153 kb on - strand at 1675.165 kb on + strand at 1675.165 kb on + strand at 1675.165 kb on + strand at 1675.166 kb on - strand at 1675.166 kb on - strand at 1675.169 kb on + strand at 1675.169 kb on + strand at 1675.262 kb on + strand at 1675.263 kb on - strand at 1675.263 kb on - strand at 1675.412 kb on - strand, within DDA3937_RS07410 at 1675.518 kb on - strand, within DDA3937_RS07410 at 1675.533 kb on + strand at 1675.534 kb on - strand, within DDA3937_RS07410 at 1675.690 kb on - strand, within DDA3937_RS07410 at 1675.690 kb on - strand, within DDA3937_RS07410 at 1675.721 kb on + strand at 1675.721 kb on + strand at 1675.722 kb on - strand at 1675.797 kb on - strand at 1675.797 kb on - strand at 1676.013 kb on + strand at 1676.013 kb on + strand at 1676.069 kb on - strand at 1676.084 kb on + strand at 1676.085 kb on - strand at 1676.085 kb on - strand at 1676.085 kb on - strand at 1676.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,672,084 - DDA3937_RS07400 0.61 -0.1 1,672,084 - DDA3937_RS07400 0.61 -1.2 1,672,084 - DDA3937_RS07400 0.61 +0.0 1,672,096 - DDA3937_RS07400 0.61 -0.1 1,672,096 - DDA3937_RS07400 0.61 -1.3 1,672,096 - DDA3937_RS07400 0.61 -1.0 1,672,096 - DDA3937_RS07400 0.61 +0.6 1,672,100 + DDA3937_RS07400 0.61 -0.5 1,672,183 - DDA3937_RS07400 0.65 -0.8 1,672,414 + DDA3937_RS07400 0.76 -0.9 1,672,415 - DDA3937_RS07400 0.76 +0.2 1,672,415 - DDA3937_RS07400 0.76 -1.0 1,672,415 - DDA3937_RS07400 0.76 -0.2 1,672,415 - DDA3937_RS07400 0.76 +0.0 1,672,415 - DDA3937_RS07400 0.76 -0.5 1,672,415 - DDA3937_RS07400 0.76 +0.7 1,672,415 - DDA3937_RS07400 0.76 -0.3 1,672,415 - DDA3937_RS07400 0.76 -1.6 1,672,473 + DDA3937_RS07400 0.79 -0.1 1,672,473 + DDA3937_RS07400 0.79 -0.1 1,672,794 + +0.2 1,672,794 + +1.8 1,672,794 + -0.4 1,672,795 - -0.1 1,672,795 - -0.4 1,672,795 - -1.8 1,672,795 - +0.5 1,672,795 - -0.9 1,672,795 - +0.2 1,672,795 - -0.0 1,672,866 + -1.9 1,672,866 + +0.3 1,672,875 + -1.8 1,672,875 + +0.7 1,672,875 + -1.4 1,672,875 + -0.4 1,672,875 + +0.3 1,672,875 + +0.7 1,672,876 - -0.5 1,672,876 - -0.1 1,672,876 - +0.2 1,672,876 - +0.7 1,672,876 - -2.7 1,672,890 + -0.5 1,672,890 + -2.7 1,672,890 + -1.3 1,672,890 + -0.3 1,672,891 - -0.0 1,672,891 - +0.6 1,672,891 - -0.1 1,672,891 - -0.2 1,672,891 - -0.8 1,672,891 - +1.6 1,672,891 - -0.5 1,673,031 + -1.0 1,673,053 + -1.5 1,673,079 + -0.8 1,673,079 + +0.9 1,673,080 - -0.7 1,673,080 - -0.7 1,673,087 + -0.4 1,673,088 - -1.3 1,673,094 + -3.8 1,673,095 - -1.7 1,673,095 - -1.3 1,673,095 - -1.0 1,673,151 + -1.9 1,673,151 + -0.7 1,673,151 + -2.2 1,673,223 + -0.8 1,673,223 + -0.3 1,673,223 + -1.1 1,673,223 + -0.1 1,673,223 + +1.2 1,673,224 - +0.9 1,673,224 - +0.1 1,673,224 - -0.7 1,673,224 - -1.4 1,673,224 - +0.5 1,673,224 - -0.3 1,673,224 - -1.9 1,673,232 + -0.1 1,673,233 - +0.1 1,673,233 - +0.6 1,673,365 - DDA3937_RS07405 0.16 -0.7 1,673,427 + DDA3937_RS07405 0.18 -0.3 1,673,428 - DDA3937_RS07405 0.19 +0.0 1,673,607 + DDA3937_RS07405 0.27 -1.4 1,673,607 + DDA3937_RS07405 0.27 -2.7 1,673,608 - DDA3937_RS07405 0.27 -0.8 1,673,632 - DDA3937_RS07405 0.28 -1.1 1,673,632 - DDA3937_RS07405 0.28 -1.5 1,673,636 - DDA3937_RS07405 0.28 +0.9 1,673,644 - DDA3937_RS07405 0.29 +2.0 1,673,646 + DDA3937_RS07405 0.29 -3.4 1,673,646 + DDA3937_RS07405 0.29 +0.1 1,673,646 + DDA3937_RS07405 0.29 -0.9 1,673,698 - DDA3937_RS07405 0.31 -2.0 1,673,784 + DDA3937_RS07405 0.35 -1.1 1,673,784 + DDA3937_RS07405 0.35 -1.2 1,673,784 + DDA3937_RS07405 0.35 -3.1 1,673,817 + DDA3937_RS07405 0.37 -0.6 1,673,818 - DDA3937_RS07405 0.37 -1.0 1,673,818 - DDA3937_RS07405 0.37 -1.3 1,673,818 - DDA3937_RS07405 0.37 +0.4 1,673,985 + DDA3937_RS07405 0.44 -0.1 1,673,985 + DDA3937_RS07405 0.44 +0.1 1,673,986 - DDA3937_RS07405 0.44 +1.5 1,674,167 + DDA3937_RS07405 0.53 -0.8 1,674,168 - DDA3937_RS07405 0.53 +0.1 1,674,168 - DDA3937_RS07405 0.53 -1.8 1,674,168 - DDA3937_RS07405 0.53 -0.0 1,674,327 + DDA3937_RS07405 0.60 -0.2 1,674,328 - DDA3937_RS07405 0.60 -0.8 1,674,331 + DDA3937_RS07405 0.60 -1.6 1,674,331 + DDA3937_RS07405 0.60 +1.0 1,674,331 + +1.3 1,674,331 + DDA3937_RS07405 0.60 +0.0 1,674,331 + DDA3937_RS07405 0.60 -1.7 1,674,331 + DDA3937_RS07405 0.60 -0.3 1,674,331 + DDA3937_RS07405 0.60 -1.3 1,674,331 + DDA3937_RS07405 0.60 -0.6 1,674,332 - DDA3937_RS07405 0.61 -0.4 1,674,332 - DDA3937_RS07405 0.61 -1.8 1,674,332 - DDA3937_RS07405 0.61 -1.5 1,674,384 + DDA3937_RS07405 0.63 -0.6 1,674,384 + DDA3937_RS07405 0.63 -0.3 1,674,385 - DDA3937_RS07405 0.63 -0.9 1,674,385 - DDA3937_RS07405 0.63 -0.4 1,674,396 + DDA3937_RS07405 0.64 -1.6 1,674,417 + DDA3937_RS07405 0.64 -3.1 1,674,417 + DDA3937_RS07405 0.64 -2.0 1,674,418 - DDA3937_RS07405 0.65 -0.5 1,674,436 + DDA3937_RS07405 0.65 -1.3 1,674,460 + DDA3937_RS07405 0.66 -1.0 1,674,462 + DDA3937_RS07405 0.67 -2.3 1,674,462 + DDA3937_RS07405 0.67 -1.1 1,674,463 - DDA3937_RS07405 0.67 -0.4 1,674,463 - DDA3937_RS07405 0.67 -0.2 1,674,463 - DDA3937_RS07405 0.67 +0.0 1,674,463 - DDA3937_RS07405 0.67 -1.4 1,674,657 + DDA3937_RS07405 0.76 +2.6 1,674,658 - DDA3937_RS07405 0.76 -1.1 1,674,658 - DDA3937_RS07405 0.76 -0.3 1,674,707 - DDA3937_RS07405 0.78 -1.1 1,674,707 - DDA3937_RS07405 0.78 -0.7 1,674,707 - DDA3937_RS07405 0.78 -2.1 1,674,731 + DDA3937_RS07405 0.79 -0.2 1,674,784 + DDA3937_RS07405 0.82 -0.7 1,674,785 - DDA3937_RS07405 0.82 -3.4 1,674,828 + DDA3937_RS07405 0.84 -0.7 1,674,828 + DDA3937_RS07405 0.84 +0.0 1,674,828 + DDA3937_RS07405 0.84 -1.4 1,674,828 + DDA3937_RS07405 0.84 -1.7 1,674,828 + DDA3937_RS07405 0.84 -1.6 1,674,828 + DDA3937_RS07405 0.84 -2.7 1,674,828 + DDA3937_RS07405 0.84 +2.1 1,674,828 + DDA3937_RS07405 0.84 -1.0 1,674,828 + DDA3937_RS07405 0.84 -0.9 1,674,828 + DDA3937_RS07405 0.84 -0.7 1,674,829 - DDA3937_RS07405 0.84 -1.8 1,674,829 - DDA3937_RS07405 0.84 -1.2 1,674,829 - DDA3937_RS07405 0.84 -0.6 1,674,829 - DDA3937_RS07405 0.84 -0.3 1,674,829 - DDA3937_RS07405 0.84 -0.1 1,674,829 - DDA3937_RS07405 0.84 -1.3 1,674,829 - DDA3937_RS07405 0.84 -1.0 1,674,829 - DDA3937_RS07405 0.84 -1.9 1,674,829 - DDA3937_RS07405 0.84 -2.8 1,674,829 - DDA3937_RS07405 0.84 +0.6 1,674,829 - DDA3937_RS07405 0.84 -1.5 1,674,829 - DDA3937_RS07405 0.84 -1.3 1,674,829 - DDA3937_RS07405 0.84 -0.4 1,675,042 - -0.3 1,675,042 - -0.4 1,675,129 + -1.1 1,675,129 + +0.1 1,675,152 + -1.0 1,675,152 + -1.7 1,675,152 + -0.4 1,675,153 - -1.5 1,675,165 + -0.4 1,675,165 + -1.0 1,675,165 + +0.9 1,675,166 - -1.3 1,675,166 - -1.4 1,675,169 + +2.5 1,675,169 + -1.4 1,675,262 + -0.8 1,675,263 - +0.4 1,675,263 - +0.8 1,675,412 - DDA3937_RS07410 0.36 +0.3 1,675,518 - DDA3937_RS07410 0.56 -0.9 1,675,533 + +0.9 1,675,534 - DDA3937_RS07410 0.59 -0.0 1,675,690 - DDA3937_RS07410 0.87 +0.3 1,675,690 - DDA3937_RS07410 0.87 +0.9 1,675,721 + +0.4 1,675,721 + +0.3 1,675,722 - -0.4 1,675,797 - -0.9 1,675,797 - +1.5 1,676,013 + -1.4 1,676,013 + -1.9 1,676,069 - +0.2 1,676,084 + -0.1 1,676,085 - -0.2 1,676,085 - -0.4 1,676,085 - -1.1 1,676,160 - +0.9
Or see this region's nucleotide sequence