Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,187,334	-				-0.5
1,187,358	+				-0.6
1,187,359	-				-1.0
1,187,359	-				-0.5
1,187,359	-				+0.4
1,187,369	+				-0.5
1,187,369	+				+0.1
1,187,369	+				-0.5
1,187,369	+				-0.5
1,187,369	+				-0.9
1,187,370	-				-0.3
1,187,370	-				-0.7
1,187,385	-				-1.1
1,187,385	-				-0.1
1,187,445	-				+0.7
1,187,445	-				-0.7
1,187,479	+				+1.7
1,187,495	+				-0.2
1,187,496	-				-0.9
1,187,554	+				+0.1
1,187,579	+				-0.9
1,187,579	+				-0.3
1,187,580	-				-1.7
1,187,641	+				-2.3
1,187,641	+				+0.8
1,187,641	+				-1.6
1,187,642	-				-0.2
1,187,642	-				-0.5
1,187,642	-				-0.5
1,187,666	+				+0.3
1,187,666	+				-0.4
1,187,666	+				+1.2
1,187,667	-				+0.2
1,187,678	-		DDA3937_RS05330	0.12	-0.2
1,187,678	-		DDA3937_RS05330	0.12	+0.2
1,187,729	-		DDA3937_RS05330	0.20	-0.7
1,187,769	+		DDA3937_RS05330	0.27	-1.0
1,187,770	-				-0.5
1,187,773	+		DDA3937_RS05330	0.27	-0.8
1,187,803	+		DDA3937_RS05330	0.32	+0.8
1,187,803	+		DDA3937_RS05330	0.32	+1.1
1,187,804	-		DDA3937_RS05330	0.33	-1.5
1,187,806	+		DDA3937_RS05330	0.33	-1.1
1,187,806	+		DDA3937_RS05330	0.33	-1.5
1,187,807	-		DDA3937_RS05330	0.33	+2.5
1,187,807	-		DDA3937_RS05330	0.33	+0.4
1,187,807	-		DDA3937_RS05330	0.33	-0.3
1,187,807	-		DDA3937_RS05330	0.33	-0.7
1,187,807	-		DDA3937_RS05330	0.33	+0.4
1,187,807	-		DDA3937_RS05330	0.33	+0.5
1,187,807	-		DDA3937_RS05330	0.33	+1.6
1,187,828	-		DDA3937_RS05330	0.37	-0.9
1,187,828	-		DDA3937_RS05330	0.37	+0.2
1,187,842	+		DDA3937_RS05330	0.39	-0.6
1,187,842	+		DDA3937_RS05330	0.39	-1.5
1,187,843	-		DDA3937_RS05330	0.39	-2.4
1,187,843	-		DDA3937_RS05330	0.39	-1.1
1,187,851	+		DDA3937_RS05330	0.41	-0.3
1,187,925	-		DDA3937_RS05330	0.53	-0.9
1,187,981	-		DDA3937_RS05330	0.62	-0.1
1,187,981	-		DDA3937_RS05330	0.62	-0.9
1,187,981	-		DDA3937_RS05330	0.62	-1.4
1,187,985	+		DDA3937_RS05330	0.63	+1.0
1,187,985	+		DDA3937_RS05330	0.63	-0.7
1,187,985	+		DDA3937_RS05330	0.63	+1.1
1,187,985	+		DDA3937_RS05330	0.63	-0.1
1,187,986	-		DDA3937_RS05330	0.63	-0.4
1,187,986	-		DDA3937_RS05330	0.63	-0.5
1,187,986	-		DDA3937_RS05330	0.63	-0.7
1,187,986	-		DDA3937_RS05330	0.63	+0.6
1,187,986	-		DDA3937_RS05330	0.63	+0.9
1,187,986	-		DDA3937_RS05330	0.63	+1.9
1,188,001	+		DDA3937_RS05330	0.66	-0.4
1,188,001	+		DDA3937_RS05330	0.66	-1.6
1,188,001	+		DDA3937_RS05330	0.66	-0.0
1,188,001	+		DDA3937_RS05330	0.66	-0.1
1,188,002	-		DDA3937_RS05330	0.66	+0.5
1,188,005	-		DDA3937_RS05330	0.66	-0.4
1,188,068	+		DDA3937_RS05330	0.77	+1.1
1,188,068	+		DDA3937_RS05330	0.77	-1.2
1,188,071	-		DDA3937_RS05330	0.77	-2.2
1,188,081	+		DDA3937_RS05330	0.79	-0.2
1,188,081	+		DDA3937_RS05330	0.79	-1.0
1,188,081	+		DDA3937_RS05330	0.79	-0.6
1,188,081	+		DDA3937_RS05330	0.79	-1.5
1,188,081	+		DDA3937_RS05330	0.79	+0.1
1,188,082	-		DDA3937_RS05330	0.79	+0.4
1,188,082	-		DDA3937_RS05330	0.79	-0.6
1,188,082	-		DDA3937_RS05330	0.79	-0.5
1,188,082	-		DDA3937_RS05330	0.79	-0.3
1,188,082	-		DDA3937_RS05330	0.79	-0.6
1,188,082	-		DDA3937_RS05330	0.79	-1.1
1,188,082	-		DDA3937_RS05330	0.79	+1.5
1,188,083	+		DDA3937_RS05330	0.79	+0.1
1,188,084	-		DDA3937_RS05330	0.80	-2.6
1,188,084	-		DDA3937_RS05330	0.80	-1.1
1,188,084	-		DDA3937_RS05330	0.80	-1.2
1,188,084	-		DDA3937_RS05330	0.80	+0.7
1,188,084	-		DDA3937_RS05330	0.80	+0.3
1,188,085	+		DDA3937_RS05330	0.80	-1.2
1,188,085	+		DDA3937_RS05330	0.80	+0.4
1,188,086	-		DDA3937_RS05330	0.80	-0.8
1,188,210	+				+0.8
1,188,279	+				-0.6
1,188,280	-				+0.5
1,188,362	+				+2.1
1,188,392	+				+0.7
1,188,504	+		DDA3937_RS05335	0.21	+0.3
1,188,530	+		DDA3937_RS05335	0.24	+0.4
1,188,618	+		DDA3937_RS05335	0.34	+2.1
1,188,623	+		DDA3937_RS05335	0.35	+1.1
1,188,716	+		DDA3937_RS05335	0.45	-0.5
1,188,873	+		DDA3937_RS05335	0.63	+0.2
1,188,874	-		DDA3937_RS05335	0.63	+0.8
1,188,874	-		DDA3937_RS05335	0.63	+0.3
1,188,881	+		DDA3937_RS05335	0.64	+1.1
1,188,882	-		DDA3937_RS05335	0.64	+0.9
1,188,882	-		DDA3937_RS05335	0.64	-0.7
1,188,882	-		DDA3937_RS05335	0.64	-0.7
1,188,932	+		DDA3937_RS05335	0.70	+2.5
1,188,934	+		DDA3937_RS05335	0.70	+2.5
1,189,053	+		DDA3937_RS05335	0.84	+0.5
1,189,063	+		DDA3937_RS05335	0.85	-1.4
1,189,064	-		DDA3937_RS05335	0.85	-1.2
1,189,064	-		DDA3937_RS05335	0.85	+0.8
1,189,064	-		DDA3937_RS05335	0.85	-0.9
1,189,211	+				-1.1
1,189,222	+				+0.0
1,189,222	+				-0.1
1,189,222	+				+1.1
1,189,223	-				-0.8
1,189,250	+				+1.8
1,189,250	+				+0.4
1,189,250	+				+0.2
1,189,250	+				-0.4
1,189,250	+				+0.7
1,189,250	+				+0.2
1,189,251	-				+1.7
1,189,251	-				+0.4
1,189,251	-				-0.1
1,189,325	+				+0.7
1,189,347	+				-0.9
1,189,367	+				-0.2
1,189,367	+				-0.2
1,189,367	+				-2.1
1,189,367	+				+0.4
1,189,368	-				-0.9
1,189,368	-				-0.2
1,189,392	+				-0.1
1,189,392	+				-0.7
1,189,393	-				+0.3
1,189,393	-				-0.4
1,189,393	-				-0.9
1,189,393	-				-0.8
1,189,414	+		DDA3937_RS05340	0.11	-0.6
1,189,414	+		DDA3937_RS05340	0.11	-0.5
1,189,414	+		DDA3937_RS05340	0.11	+0.1
1,189,414	+		DDA3937_RS05340	0.11	+0.3
1,189,414	+		DDA3937_RS05340	0.11	-0.5
1,189,414	+		DDA3937_RS05340	0.11	+0.7
1,189,414	+		DDA3937_RS05340	0.11	-0.2
1,189,414	+		DDA3937_RS05340	0.11	+0.3
1,189,415	-		DDA3937_RS05340	0.11	+0.2
1,189,415	-		DDA3937_RS05340	0.11	+0.3
1,189,415	-		DDA3937_RS05340	0.11	+0.4
1,189,415	-		DDA3937_RS05340	0.11	+0.1
1,189,415	-		DDA3937_RS05340	0.11	-0.2
1,189,415	-		DDA3937_RS05340	0.11	+2.2
1,189,415	-		DDA3937_RS05340	0.11	-0.7
1,189,434	+		DDA3937_RS05340	0.15	+0.1
1,189,434	+		DDA3937_RS05340	0.15	-0.6
1,189,434	+		DDA3937_RS05340	0.15	-0.1
1,189,434	+		DDA3937_RS05340	0.15	+2.7
1,189,435	-		DDA3937_RS05340	0.15	-1.0
1,189,561	+		DDA3937_RS05340	0.39	+0.5
1,189,561	+		DDA3937_RS05340	0.39	+0.5
1,189,562	-		DDA3937_RS05340	0.39	-0.4
1,189,562	-		DDA3937_RS05340	0.39	+1.1
1,189,573	+		DDA3937_RS05340	0.41	-0.2
1,189,574	-		DDA3937_RS05340	0.41	-1.1
1,189,574	-		DDA3937_RS05340	0.41	+0.7
1,189,586	-		DDA3937_RS05340	0.44	+1.5
1,189,591	+		DDA3937_RS05340	0.45	+0.8
1,189,618	+		DDA3937_RS05340	0.50	+0.1
1,189,618	+		DDA3937_RS05340	0.50	-2.2
1,189,618	+		DDA3937_RS05340	0.50	+0.6
1,189,679	+		DDA3937_RS05340	0.61	-0.1
1,189,680	-		DDA3937_RS05340	0.61	+1.4
1,189,754	+		DDA3937_RS05340	0.75	+1.1
1,189,755	-		DDA3937_RS05340	0.76	+1.1
1,189,781	+		DDA3937_RS05340	0.80	+1.4
1,189,782	-		DDA3937_RS05340	0.81	-0.1
1,189,782	-		DDA3937_RS05340	0.81	-1.4
1,189,937	-				+1.1
1,189,955	+				+0.8
1,189,955	+				+1.0
1,189,956	-				-0.4
1,190,177	+		DDA3937_RS05345	0.26	-1.1
1,190,177	+		DDA3937_RS05345	0.26	-0.0
1,190,178	-		DDA3937_RS05345	0.26	-0.6
1,190,178	-		DDA3937_RS05345	0.26	-1.4
1,190,182	+		DDA3937_RS05345	0.26	-3.1