Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04665

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,028,068	+				+0.2
1,028,068	+				+0.6
1,028,069	-				-0.4
1,028,069	-				+1.1
1,028,123	+				+1.1
1,028,123	+				+0.1
1,028,126	+				+0.7
1,028,126	+				+0.4
1,028,126	+				+0.6
1,028,126	+				-0.3
1,028,126	+				-0.9
1,028,126	+				-1.4
1,028,126	+				+0.5
1,028,127	-				+0.8
1,028,127	-				-2.2
1,028,127	-				-0.7
1,028,127	-				+0.4
1,028,127	-				-1.5
1,028,127	-				+0.2
1,028,127	-				-0.0
1,028,127	-				-1.2
1,028,132	+				-2.4
1,028,172	+				-0.3
1,028,172	+				+0.0
1,028,173	-				-1.5
1,028,199	+				+0.7
1,028,199	+				-0.2
1,028,199	+				+0.7
1,028,199	+				-1.1
1,028,199	+				-0.1
1,028,200	-				+0.8
1,028,200	-				+0.2
1,028,226	+		DDA3937_RS04660	0.10	-1.5
1,028,226	+		DDA3937_RS04660	0.10	-1.0
1,028,290	+		DDA3937_RS04660	0.17	-0.4
1,028,290	+		DDA3937_RS04660	0.17	+0.1
1,028,290	+		DDA3937_RS04660	0.17	+0.4
1,028,290	+		DDA3937_RS04660	0.17	-1.4
1,028,291	-		DDA3937_RS04660	0.17	-1.5
1,028,292	+		DDA3937_RS04660	0.18	-0.3
1,028,293	-		DDA3937_RS04660	0.18	-0.6
1,028,437	-		DDA3937_RS04660	0.34	-0.3
1,028,437	-		DDA3937_RS04660	0.34	+0.3
1,028,489	-		DDA3937_RS04660	0.40	-0.2
1,028,490	+		DDA3937_RS04660	0.40	-0.5
1,028,490	+		DDA3937_RS04660	0.40	+0.5
1,028,490	+		DDA3937_RS04660	0.40	-0.2
1,028,491	-		DDA3937_RS04660	0.40	-1.2
1,028,491	-		DDA3937_RS04660	0.40	-0.3
1,028,491	-		DDA3937_RS04660	0.40	-0.6
1,028,491	-		DDA3937_RS04660	0.40	-1.0
1,028,491	-		DDA3937_RS04660	0.40	-0.5
1,028,491	-		DDA3937_RS04660	0.40	-1.5
1,028,491	-		DDA3937_RS04660	0.40	-0.3
1,028,502	+		DDA3937_RS04660	0.42	-0.7
1,028,502	+		DDA3937_RS04660	0.42	-0.1
1,028,503	-		DDA3937_RS04660	0.42	+0.5
1,028,698	+		DDA3937_RS04660	0.64	-0.4
1,028,698	+		DDA3937_RS04660	0.64	-1.0
1,028,737	-				-0.5
1,028,758	+		DDA3937_RS04660	0.71	-0.3
1,028,759	-		DDA3937_RS04660	0.71	-1.5
1,028,769	+		DDA3937_RS04660	0.72	-1.3
1,028,769	+		DDA3937_RS04660	0.72	-0.4
1,028,769	+		DDA3937_RS04660	0.72	-0.4
1,028,769	+		DDA3937_RS04660	0.72	-1.2
1,028,770	-		DDA3937_RS04660	0.72	+0.1
1,028,770	-		DDA3937_RS04660	0.72	-0.3
1,028,770	-		DDA3937_RS04660	0.72	-1.2
1,028,770	-		DDA3937_RS04660	0.72	-0.2
1,028,770	-		DDA3937_RS04660	0.72	+0.2
1,028,809	-		DDA3937_RS04660	0.77	-0.1
1,028,873	+		DDA3937_RS04660	0.84	-2.2
1,028,951	-				-0.5
1,029,015	+				-0.8
1,029,015	+				-0.7
1,029,015	+				-1.0
1,029,015	+				-2.4
1,029,015	+				-1.9
1,029,015	+				+0.1
1,029,015	+				-1.5
1,029,015	+				-2.2
1,029,015	+				-0.5
1,029,015	+				-0.5
1,029,015	+				+0.8
1,029,015	+				+0.2
1,029,016	-				-0.9
1,029,016	-				-0.2
1,029,016	-				-0.7
1,029,016	-				-0.5
1,029,016	-				-0.9
1,029,016	-				-0.9
1,029,016	-				-0.3
1,029,016	-				-2.1
1,029,017	+				+0.5
1,029,029	+				+2.8
1,029,029	+				+0.9
1,029,029	+				-0.3
1,029,034	+				-0.1
1,029,034	+				+0.8
1,029,034	+				+0.8
1,029,034	+				-2.4
1,029,034	+				+0.0
1,029,034	+				+0.8
1,029,034	+				+0.5
1,029,034	+				+0.8
1,029,035	-				+0.7
1,029,035	-				+0.5
1,029,035	-				+1.4
1,029,035	-				+1.6
1,029,035	-				-0.1
1,029,035	-				+1.6
1,029,035	-				+0.8
1,029,035	-				-0.1
1,029,035	-				+0.8
1,029,035	-				+0.6
1,029,035	-				+0.3
1,029,035	-				+0.6
1,029,036	+				-1.1
1,029,036	+				-0.8
1,029,036	+				+0.2
1,029,037	-				+0.4
1,029,192	+		DDA3937_RS04665	0.29	-0.3
1,029,225	-		DDA3937_RS04665	0.34	-0.2
1,029,258	+		DDA3937_RS04665	0.40	-0.8
1,029,258	+		DDA3937_RS04665	0.40	+0.2
1,029,259	-		DDA3937_RS04665	0.40	+0.9
1,029,282	-		DDA3937_RS04665	0.44	+1.7
1,029,355	+		DDA3937_RS04665	0.55	+0.1
1,029,376	+		DDA3937_RS04665	0.59	-0.2
1,029,376	+		DDA3937_RS04665	0.59	-0.2
1,029,376	+		DDA3937_RS04665	0.59	+0.8
1,029,377	-		DDA3937_RS04665	0.59	-0.2
1,029,377	-		DDA3937_RS04665	0.59	+2.8
1,029,380	-		DDA3937_RS04665	0.60	+5.7
1,029,380	-		DDA3937_RS04665	0.60	+1.7
1,029,408	+		DDA3937_RS04665	0.64	+0.6
1,029,409	-		DDA3937_RS04665	0.64	+0.1
1,029,451	+		DDA3937_RS04665	0.71	-0.1
1,029,451	+		DDA3937_RS04665	0.71	+0.4
1,029,452	-		DDA3937_RS04665	0.71	-0.4
1,029,452	-		DDA3937_RS04665	0.71	-0.2
1,029,482	+		DDA3937_RS04665	0.76	+0.1
1,029,488	-		DDA3937_RS04665	0.77	+1.0
1,029,504	+		DDA3937_RS04665	0.80	-0.3
1,029,508	+		DDA3937_RS04665	0.80	+0.4
1,029,508	+		DDA3937_RS04665	0.80	-0.7
1,029,508	+		DDA3937_RS04665	0.80	+0.3
1,029,508	+		DDA3937_RS04665	0.80	+1.6
1,029,508	+		DDA3937_RS04665	0.80	+0.4
1,029,509	-		DDA3937_RS04665	0.80	+0.7
1,029,509	-		DDA3937_RS04665	0.80	+1.5
1,029,566	-		DDA3937_RS04665	0.90	-0.2
1,029,576	+				+0.0
1,029,576	+				+0.6
1,029,576	+				-1.7
1,029,577	-				+1.6
1,029,577	-				+0.0
1,029,577	-				-0.7
1,029,590	-				+1.4
1,029,595	+				+1.2
1,029,596	-				-0.1
1,029,599	-				-0.1
1,029,599	-				-0.1
1,029,670	-				-0.3
1,029,682	+				+0.1
1,029,682	+				-0.4
1,029,692	+				-0.2
1,029,693	-				+0.7
1,029,693	-				-0.3
1,029,742	+				-1.7
1,029,742	+				+0.2
1,029,742	+				-0.3
1,029,742	+				+0.1
1,029,743	-				-1.1
1,029,743	-				+0.7
1,029,743	-				+0.1
1,029,743	-				-0.6
1,029,743	-				-0.0
1,029,767	-				-1.2
1,029,769	+				-0.6
1,029,769	+				+1.5
1,029,777	+				-0.6
1,029,777	+				+0.4
1,029,801	+				+0.1
1,029,836	-				+1.0
1,029,838	+				+0.5
1,029,838	+				+0.0
1,029,838	+				+2.1
1,029,838	+				-0.3
1,029,838	+				-1.2
1,029,838	+				-0.2
1,029,839	-				-0.7
1,029,878	+				+2.4
1,029,917	-				+1.3
1,029,924	+				-0.0
1,029,924	+				+0.7
1,029,926	+				+0.3
1,029,926	+				-0.5
1,029,927	-				-1.0
1,029,932	+				+1.5
1,029,932	+				+1.9
1,029,933	-				+1.1
1,029,937	+				+0.7
1,029,937	+				+0.4
1,029,937	+				-0.3
1,029,938	-				-0.6
1,029,938	-				+1.3
1,029,938	-				-0.7
1,029,938	-				-0.7
1,029,943	+				+0.7
1,029,943	+				+0.5
1,029,943	+				+0.1
1,029,943	+				-1.3
1,029,943	+				-0.6
1,029,946	+				+0.8
1,029,946	+				+0.4
1,029,946	+				-2.4
1,029,951	+				+0.3
1,029,952	-				+1.5
1,029,952	-				-0.1
1,029,991	+				-0.5
1,029,991	+				-0.6
1,029,991	+				+0.7
1,030,114	+				-0.6
1,030,114	+				+0.7
1,030,114	+				-0.1
1,030,115	-				-0.7
1,030,115	-				+0.1
1,030,115	-				+0.3
1,030,118	+				-0.0
1,030,118	+				+0.9
1,030,119	-				-0.6
1,030,119	-				-0.8
1,030,149	+				-0.6
1,030,150	-				-0.8
1,030,150	-				-0.5
1,030,164	+				-1.2
1,030,164	+				+3.0
1,030,164	+				-0.7
1,030,164	+				+2.1
1,030,164	+				-3.1
1,030,165	-				-1.4
1,030,165	-				-0.3
1,030,165	-				+0.0
1,030,216	+				+0.0
1,030,317	+				+0.4
1,030,328	+				+0.8
1,030,328	+				+0.7
1,030,328	+				-1.3
1,030,328	+				-1.5
1,030,329	-				-0.8
1,030,329	-				+0.2
1,030,329	-				+0.9
1,030,329	-				+0.1
1,030,329	-				-0.3
1,030,329	-				-0.1
1,030,329	-				-0.2
1,030,329	-				-0.2
1,030,329	-				+0.7
1,030,329	-				+1.5
1,030,329	-				+2.2
1,030,329	-				-1.7
1,030,404	+				-0.1
1,030,405	-				-0.3
1,030,445	+				-0.6
1,030,446	-				-0.5
1,030,455	+				-0.0
1,030,455	+				-0.6
1,030,455	+				-0.2
1,030,455	+				-0.3
1,030,455	+				+0.5
1,030,455	+				-0.9
1,030,455	+				-0.0
1,030,455	+				+0.3
1,030,456	-				+0.9
1,030,456	-				+0.1
1,030,456	-				-0.1
1,030,456	-				-0.7
1,030,467	-		DDA3937_RS04670	0.10	-0.1
1,030,467	-		DDA3937_RS04670	0.10	-0.1
1,030,567	-		DDA3937_RS04670	0.16	-0.6
1,030,577	+		DDA3937_RS04670	0.16	-1.3
1,030,577	+		DDA3937_RS04670	0.16	-0.1
1,030,577	+		DDA3937_RS04670	0.16	-0.8
1,030,577	+		DDA3937_RS04670	0.16	+1.1
1,030,577	+		DDA3937_RS04670	0.16	-0.3
1,030,578	-		DDA3937_RS04670	0.16	-0.2
1,030,578	-		DDA3937_RS04670	0.16	-0.0
1,030,578	-		DDA3937_RS04670	0.16	-0.2
1,030,578	-		DDA3937_RS04670	0.16	-0.7
1,030,578	-				+1.1
1,030,578	-		DDA3937_RS04670	0.16	+1.1
1,030,611	+		DDA3937_RS04670	0.18	+0.8
1,030,611	+		DDA3937_RS04670	0.18	-2.1
1,030,612	-		DDA3937_RS04670	0.18	-0.4
1,030,612	-		DDA3937_RS04670	0.18	-0.5
1,030,612	-		DDA3937_RS04670	0.18	-1.2
1,030,620	+		DDA3937_RS04670	0.19	+0.9