Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04620

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04615 and DDA3937_RS04620 are separated by 9 nucleotidesDDA3937_RS04620 and DDA3937_RS04625 overlap by 4 nucleotidesDDA3937_RS04625 and DDA3937_RS04630 are separated by 60 nucleotides DDA3937_RS04615: DDA3937_RS04615 - ABC transporter ATP-binding protein, at 1,018,071 to 1,019,159 _RS04615 DDA3937_RS04620: DDA3937_RS04620 - carbohydrate ABC transporter permease, at 1,019,169 to 1,019,996 _RS04620 DDA3937_RS04625: DDA3937_RS04625 - sugar ABC transporter permease, at 1,019,993 to 1,020,862 _RS04625 DDA3937_RS04630: DDA3937_RS04630 - ABC transporter substrate-binding protein, at 1,020,923 to 1,022,215 _RS04630 Position (kb) 1019 1020Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1018.261 kb on + strand, within DDA3937_RS04615at 1018.262 kb on - strand, within DDA3937_RS04615at 1018.262 kb on - strand, within DDA3937_RS04615at 1018.478 kb on + strand, within DDA3937_RS04615at 1018.479 kb on - strand, within DDA3937_RS04615at 1018.495 kb on + strand, within DDA3937_RS04615at 1018.496 kb on - strand, within DDA3937_RS04615at 1018.496 kb on - strand, within DDA3937_RS04615at 1018.496 kb on - strand, within DDA3937_RS04615at 1018.594 kb on + strand, within DDA3937_RS04615at 1018.594 kb on + strand, within DDA3937_RS04615at 1018.594 kb on + strand, within DDA3937_RS04615at 1018.594 kb on + strand, within DDA3937_RS04615at 1018.594 kb on + strand, within DDA3937_RS04615at 1018.594 kb on + strand, within DDA3937_RS04615at 1018.632 kb on + strand, within DDA3937_RS04615at 1018.773 kb on - strand, within DDA3937_RS04615at 1018.909 kb on + strandat 1018.910 kb on - strand, within DDA3937_RS04615at 1018.962 kb on - strand, within DDA3937_RS04615at 1019.142 kb on + strandat 1019.143 kb on - strandat 1019.143 kb on - strandat 1019.149 kb on - strandat 1019.149 kb on - strandat 1019.149 kb on - strandat 1019.149 kb on - strandat 1019.171 kb on - strandat 1019.203 kb on + strandat 1019.203 kb on + strandat 1019.203 kb on + strandat 1019.204 kb on - strandat 1019.204 kb on - strandat 1019.204 kb on - strandat 1019.204 kb on - strandat 1019.204 kb on - strandat 1019.279 kb on - strand, within DDA3937_RS04620at 1019.279 kb on - strand, within DDA3937_RS04620at 1019.347 kb on + strand, within DDA3937_RS04620at 1019.347 kb on + strand, within DDA3937_RS04620at 1019.348 kb on - strand, within DDA3937_RS04620at 1019.502 kb on + strand, within DDA3937_RS04620at 1019.502 kb on + strand, within DDA3937_RS04620at 1019.503 kb on - strand, within DDA3937_RS04620at 1019.549 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.551 kb on + strand, within DDA3937_RS04620at 1019.552 kb on - strand, within DDA3937_RS04620at 1019.552 kb on - strand, within DDA3937_RS04620at 1019.552 kb on - strand, within DDA3937_RS04620at 1019.552 kb on - strand, within DDA3937_RS04620at 1019.552 kb on - strand, within DDA3937_RS04620at 1019.560 kb on + strand, within DDA3937_RS04620at 1019.560 kb on + strand, within DDA3937_RS04620at 1019.561 kb on - strand, within DDA3937_RS04620at 1019.617 kb on + strand, within DDA3937_RS04620at 1019.617 kb on + strand, within DDA3937_RS04620at 1019.618 kb on - strand, within DDA3937_RS04620at 1019.783 kb on + strand, within DDA3937_RS04620at 1019.786 kb on + strand, within DDA3937_RS04620at 1020.030 kb on + strandat 1020.120 kb on + strand, within DDA3937_RS04625at 1020.120 kb on + strand, within DDA3937_RS04625at 1020.120 kb on + strand, within DDA3937_RS04625at 1020.121 kb on - strand, within DDA3937_RS04625at 1020.121 kb on - strand, within DDA3937_RS04625at 1020.121 kb on - strand, within DDA3937_RS04625at 1020.121 kb on - strand, within DDA3937_RS04625at 1020.121 kb on - strandat 1020.121 kb on - strand, within DDA3937_RS04625at 1020.121 kb on - strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.124 kb on + strand, within DDA3937_RS04625at 1020.125 kb on - strand, within DDA3937_RS04625at 1020.125 kb on - strand, within DDA3937_RS04625at 1020.125 kb on - strand, within DDA3937_RS04625at 1020.125 kb on - strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.126 kb on + strand, within DDA3937_RS04625at 1020.127 kb on - strand, within DDA3937_RS04625at 1020.127 kb on - strand, within DDA3937_RS04625at 1020.127 kb on - strand, within DDA3937_RS04625at 1020.127 kb on - strand, within DDA3937_RS04625at 1020.127 kb on - strand, within DDA3937_RS04625at 1020.127 kb on - strand, within DDA3937_RS04625at 1020.264 kb on + strand, within DDA3937_RS04625at 1020.264 kb on + strand, within DDA3937_RS04625at 1020.264 kb on + strand, within DDA3937_RS04625at 1020.351 kb on - strand, within DDA3937_RS04625at 1020.487 kb on - strand, within DDA3937_RS04625at 1020.508 kb on + strand, within DDA3937_RS04625at 1020.544 kb on - strand, within DDA3937_RS04625at 1020.705 kb on + strand, within DDA3937_RS04625at 1020.705 kb on + strand, within DDA3937_RS04625at 1020.741 kb on + strand, within DDA3937_RS04625at 1020.762 kb on + strand, within DDA3937_RS04625at 1020.762 kb on + strand, within DDA3937_RS04625at 1020.762 kb on + strand, within DDA3937_RS04625at 1020.762 kb on + strand, within DDA3937_RS04625at 1020.763 kb on - strand, within DDA3937_RS04625at 1020.763 kb on - strand, within DDA3937_RS04625at 1020.763 kb on - strand, within DDA3937_RS04625at 1020.763 kb on - strand, within DDA3937_RS04625at 1020.800 kb on + strandat 1020.801 kb on - strandat 1020.891 kb on - strandat 1020.924 kb on + strandat 1020.924 kb on + strandat 1020.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,018,261 + DDA3937_RS04615 0.17 +0.6
1,018,262 - DDA3937_RS04615 0.18 -0.9
1,018,262 - DDA3937_RS04615 0.18 +2.0
1,018,478 + DDA3937_RS04615 0.37 -0.7
1,018,479 - DDA3937_RS04615 0.37 +0.3
1,018,495 + DDA3937_RS04615 0.39 +0.0
1,018,496 - DDA3937_RS04615 0.39 -1.0
1,018,496 - DDA3937_RS04615 0.39 -1.0
1,018,496 - DDA3937_RS04615 0.39 -0.2
1,018,594 + DDA3937_RS04615 0.48 -0.5
1,018,594 + DDA3937_RS04615 0.48 +0.5
1,018,594 + DDA3937_RS04615 0.48 -1.5
1,018,594 + DDA3937_RS04615 0.48 -1.5
1,018,594 + DDA3937_RS04615 0.48 -0.5
1,018,594 + DDA3937_RS04615 0.48 -2.6
1,018,632 + DDA3937_RS04615 0.52 +0.0
1,018,773 - DDA3937_RS04615 0.64 -1.5
1,018,909 + -1.5
1,018,910 - DDA3937_RS04615 0.77 -0.4
1,018,962 - DDA3937_RS04615 0.82 -0.7
1,019,142 + +0.1
1,019,143 - -0.5
1,019,143 - -0.5
1,019,149 - -0.4
1,019,149 - -1.4
1,019,149 - +0.8
1,019,149 - +0.1
1,019,171 - -1.5
1,019,203 + -0.3
1,019,203 + -0.1
1,019,203 + +0.7
1,019,204 - -0.5
1,019,204 - -1.3
1,019,204 - -0.6
1,019,204 - -1.6
1,019,204 - +1.1
1,019,279 - DDA3937_RS04620 0.13 -0.2
1,019,279 - DDA3937_RS04620 0.13 -0.1
1,019,347 + DDA3937_RS04620 0.21 +0.9
1,019,347 + DDA3937_RS04620 0.21 -0.4
1,019,348 - DDA3937_RS04620 0.22 -0.7
1,019,502 + DDA3937_RS04620 0.40 -0.1
1,019,502 + DDA3937_RS04620 0.40 -2.2
1,019,503 - DDA3937_RS04620 0.40 -0.3
1,019,549 + DDA3937_RS04620 0.46 +0.0
1,019,551 + DDA3937_RS04620 0.46 -0.0
1,019,551 + DDA3937_RS04620 0.46 +0.2
1,019,551 + DDA3937_RS04620 0.46 +0.1
1,019,551 + DDA3937_RS04620 0.46 -1.4
1,019,551 + DDA3937_RS04620 0.46 -0.7
1,019,551 + DDA3937_RS04620 0.46 -0.7
1,019,551 + DDA3937_RS04620 0.46 -2.4
1,019,551 + DDA3937_RS04620 0.46 +0.4
1,019,551 + DDA3937_RS04620 0.46 -1.4
1,019,551 + DDA3937_RS04620 0.46 -0.7
1,019,552 - DDA3937_RS04620 0.46 -0.2
1,019,552 - DDA3937_RS04620 0.46 +0.0
1,019,552 - DDA3937_RS04620 0.46 -0.4
1,019,552 - DDA3937_RS04620 0.46 +0.1
1,019,552 - DDA3937_RS04620 0.46 -1.9
1,019,560 + DDA3937_RS04620 0.47 -0.1
1,019,560 + DDA3937_RS04620 0.47 -0.9
1,019,561 - DDA3937_RS04620 0.47 -0.3
1,019,617 + DDA3937_RS04620 0.54 -0.6
1,019,617 + DDA3937_RS04620 0.54 -0.6
1,019,618 - DDA3937_RS04620 0.54 +0.3
1,019,783 + DDA3937_RS04620 0.74 -0.6
1,019,786 + DDA3937_RS04620 0.75 -1.0
1,020,030 + -0.6
1,020,120 + DDA3937_RS04625 0.15 -0.0
1,020,120 + DDA3937_RS04625 0.15 -0.3
1,020,120 + DDA3937_RS04625 0.15 +0.5
1,020,121 - DDA3937_RS04625 0.15 +0.3
1,020,121 - DDA3937_RS04625 0.15 +1.1
1,020,121 - DDA3937_RS04625 0.15 -0.3
1,020,121 - DDA3937_RS04625 0.15 +0.1
1,020,121 - +3.1
1,020,121 - DDA3937_RS04625 0.15 -0.2
1,020,121 - DDA3937_RS04625 0.15 -1.0
1,020,124 + DDA3937_RS04625 0.15 -0.3
1,020,124 + DDA3937_RS04625 0.15 -1.8
1,020,124 + DDA3937_RS04625 0.15 -0.9
1,020,124 + DDA3937_RS04625 0.15 +0.0
1,020,124 + DDA3937_RS04625 0.15 +0.5
1,020,124 + DDA3937_RS04625 0.15 -2.0
1,020,124 + DDA3937_RS04625 0.15 -0.8
1,020,124 + DDA3937_RS04625 0.15 -1.1
1,020,124 + DDA3937_RS04625 0.15 -1.3
1,020,125 - DDA3937_RS04625 0.15 -0.6
1,020,125 - DDA3937_RS04625 0.15 -0.7
1,020,125 - DDA3937_RS04625 0.15 +0.3
1,020,125 - DDA3937_RS04625 0.15 -0.5
1,020,126 + DDA3937_RS04625 0.15 +0.2
1,020,126 + DDA3937_RS04625 0.15 +0.2
1,020,126 + DDA3937_RS04625 0.15 +0.6
1,020,126 + DDA3937_RS04625 0.15 +1.4
1,020,126 + DDA3937_RS04625 0.15 +1.0
1,020,126 + DDA3937_RS04625 0.15 -1.1
1,020,126 + DDA3937_RS04625 0.15 +0.1
1,020,126 + DDA3937_RS04625 0.15 -1.0
1,020,126 + DDA3937_RS04625 0.15 -1.1
1,020,127 - DDA3937_RS04625 0.15 -0.3
1,020,127 - DDA3937_RS04625 0.15 +1.7
1,020,127 - DDA3937_RS04625 0.15 -0.2
1,020,127 - DDA3937_RS04625 0.15 +0.3
1,020,127 - DDA3937_RS04625 0.15 -0.9
1,020,127 - DDA3937_RS04625 0.15 +0.4
1,020,264 + DDA3937_RS04625 0.31 -0.3
1,020,264 + DDA3937_RS04625 0.31 -0.1
1,020,264 + DDA3937_RS04625 0.31 +0.9
1,020,351 - DDA3937_RS04625 0.41 -2.2
1,020,487 - DDA3937_RS04625 0.57 -1.1
1,020,508 + DDA3937_RS04625 0.59 -0.9
1,020,544 - DDA3937_RS04625 0.63 +3.2
1,020,705 + DDA3937_RS04625 0.82 +0.2
1,020,705 + DDA3937_RS04625 0.82 +0.5
1,020,741 + DDA3937_RS04625 0.86 -0.3
1,020,762 + DDA3937_RS04625 0.88 +1.3
1,020,762 + DDA3937_RS04625 0.88 -0.6
1,020,762 + DDA3937_RS04625 0.88 -0.5
1,020,762 + DDA3937_RS04625 0.88 -0.2
1,020,763 - DDA3937_RS04625 0.89 -0.5
1,020,763 - DDA3937_RS04625 0.89 -0.4
1,020,763 - DDA3937_RS04625 0.89 +1.4
1,020,763 - DDA3937_RS04625 0.89 -2.2
1,020,800 + +0.1
1,020,801 - -1.9
1,020,891 - +0.8
1,020,924 + +0.3
1,020,924 + +0.2
1,020,932 + -0.3

Or see this region's nucleotide sequence