Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04225 and DDA3937_RS04230 overlap by 4 nucleotides DDA3937_RS04230 and DDA3937_RS04235 are separated by 8 nucleotides DDA3937_RS04235 and DDA3937_RS04240 overlap by 14 nucleotides DDA3937_RS04240 and DDA3937_RS04245 overlap by 1 nucleotides DDA3937_RS04245 and DDA3937_RS04250 are separated by 132 nucleotides
DDA3937_RS04225: DDA3937_RS04225 - DUF2586 domain-containing protein, at 933,897 to 935,012
_RS04225
DDA3937_RS04230: DDA3937_RS04230 - DUF2597 family protein, at 935,009 to 935,464
_RS04230
DDA3937_RS04235: DDA3937_RS04235 - phage holin family protein, at 935,473 to 935,778
_RS04235
DDA3937_RS04240: DDA3937_RS04240 - M15 family metallopeptidase, at 935,765 to 936,106
_RS04240
DDA3937_RS04245: DDA3937_RS04245 - hypothetical protein, at 936,106 to 936,462
_RS04245
DDA3937_RS04250: DDA3937_RS04250 - putative phage tail assembly chaperone, at 936,595 to 936,852
_RS04250
Position (kb) 935
936 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 934.568 kb on - strand, within DDA3937_RS04225 at 934.590 kb on + strand, within DDA3937_RS04225 at 934.617 kb on + strand, within DDA3937_RS04225 at 934.617 kb on + strand, within DDA3937_RS04225 at 934.626 kb on + strand, within DDA3937_RS04225 at 934.627 kb on - strand, within DDA3937_RS04225 at 934.629 kb on + strand, within DDA3937_RS04225 at 934.630 kb on - strand, within DDA3937_RS04225 at 934.630 kb on - strand, within DDA3937_RS04225 at 934.630 kb on - strand, within DDA3937_RS04225 at 934.671 kb on + strand, within DDA3937_RS04225 at 934.797 kb on + strand, within DDA3937_RS04225 at 934.797 kb on + strand, within DDA3937_RS04225 at 934.798 kb on - strand, within DDA3937_RS04225 at 934.798 kb on - strand, within DDA3937_RS04225 at 934.944 kb on - strand at 934.947 kb on + strand at 934.947 kb on + strand at 934.947 kb on + strand at 934.948 kb on - strand at 934.948 kb on - strand at 934.948 kb on - strand at 934.988 kb on + strand at 934.988 kb on + strand at 934.989 kb on - strand at 934.989 kb on - strand at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.183 kb on - strand, within DDA3937_RS04230 at 935.265 kb on - strand, within DDA3937_RS04230 at 935.377 kb on + strand, within DDA3937_RS04230 at 935.378 kb on - strand, within DDA3937_RS04230 at 935.378 kb on - strand, within DDA3937_RS04230 at 935.483 kb on - strand at 935.504 kb on + strand, within DDA3937_RS04235 at 935.535 kb on + strand, within DDA3937_RS04235 at 935.733 kb on + strand, within DDA3937_RS04235 at 935.734 kb on - strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.772 kb on + strand at 935.772 kb on + strand at 935.773 kb on - strand at 935.773 kb on - strand at 935.790 kb on + strand at 935.790 kb on + strand at 935.791 kb on - strand at 935.791 kb on - strand at 935.864 kb on + strand, within DDA3937_RS04240 at 935.865 kb on - strand, within DDA3937_RS04240 at 935.929 kb on + strand, within DDA3937_RS04240 at 935.975 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.997 kb on - strand, within DDA3937_RS04240 at 936.249 kb on - strand, within DDA3937_RS04245 at 936.249 kb on - strand, within DDA3937_RS04245 at 936.302 kb on + strand, within DDA3937_RS04245 at 936.303 kb on - strand, within DDA3937_RS04245 at 936.355 kb on - strand, within DDA3937_RS04245 at 936.355 kb on - strand, within DDA3937_RS04245 at 936.358 kb on - strand, within DDA3937_RS04245 at 936.392 kb on - strand, within DDA3937_RS04245 at 936.392 kb on - strand, within DDA3937_RS04245 at 936.425 kb on + strand, within DDA3937_RS04245 at 936.461 kb on - strand at 936.482 kb on - strand at 936.553 kb on + strand at 936.554 kb on - strand at 936.554 kb on - strand at 936.562 kb on - strand at 936.562 kb on - strand at 936.574 kb on - strand at 936.574 kb on - strand at 936.574 kb on - strand at 936.606 kb on + strand at 936.607 kb on - strand at 936.607 kb on - strand at 936.658 kb on + strand, within DDA3937_RS04250 at 936.659 kb on - strand, within DDA3937_RS04250 at 936.673 kb on - strand, within DDA3937_RS04250 at 936.693 kb on + strand, within DDA3937_RS04250 at 936.694 kb on - strand, within DDA3937_RS04250 at 936.694 kb on - strand, within DDA3937_RS04250 at 936.694 kb on - strand, within DDA3937_RS04250 at 936.715 kb on + strand, within DDA3937_RS04250 at 936.715 kb on + strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250 at 936.716 kb on - strand, within DDA3937_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 934,568 - DDA3937_RS04225 0.60 -0.5 934,590 + DDA3937_RS04225 0.62 +0.6 934,617 + DDA3937_RS04225 0.65 +1.1 934,617 + DDA3937_RS04225 0.65 +2.4 934,626 + DDA3937_RS04225 0.65 +0.5 934,627 - DDA3937_RS04225 0.65 -1.7 934,629 + DDA3937_RS04225 0.66 +0.1 934,630 - DDA3937_RS04225 0.66 +1.0 934,630 - DDA3937_RS04225 0.66 +0.4 934,630 - DDA3937_RS04225 0.66 +1.9 934,671 + DDA3937_RS04225 0.69 +2.1 934,797 + DDA3937_RS04225 0.81 +1.0 934,797 + DDA3937_RS04225 0.81 +0.8 934,798 - DDA3937_RS04225 0.81 +0.0 934,798 - DDA3937_RS04225 0.81 +2.6 934,944 - +1.1 934,947 + +2.5 934,947 + +1.9 934,947 + +0.9 934,948 - +0.6 934,948 - -0.5 934,948 - -0.5 934,988 + +0.7 934,988 + +1.7 934,989 - -1.3 934,989 - +0.5 935,178 + DDA3937_RS04230 0.37 +0.8 935,178 + DDA3937_RS04230 0.37 +2.1 935,178 + DDA3937_RS04230 0.37 +0.3 935,178 + DDA3937_RS04230 0.37 +0.5 935,178 + DDA3937_RS04230 0.37 +2.2 935,179 - DDA3937_RS04230 0.37 -1.7 935,179 - DDA3937_RS04230 0.37 -0.7 935,179 - DDA3937_RS04230 0.37 +2.0 935,179 - DDA3937_RS04230 0.37 -0.1 935,179 - DDA3937_RS04230 0.37 -1.1 935,179 - DDA3937_RS04230 0.37 -0.7 935,179 - DDA3937_RS04230 0.37 +0.4 935,179 - DDA3937_RS04230 0.37 +0.3 935,179 - DDA3937_RS04230 0.37 -0.3 935,179 - DDA3937_RS04230 0.37 +0.9 935,183 - DDA3937_RS04230 0.38 +0.2 935,265 - DDA3937_RS04230 0.56 -0.2 935,377 + DDA3937_RS04230 0.81 +1.0 935,378 - DDA3937_RS04230 0.81 -1.1 935,378 - DDA3937_RS04230 0.81 -0.3 935,483 - -0.3 935,504 + DDA3937_RS04235 0.10 +1.8 935,535 + DDA3937_RS04235 0.20 +3.1 935,733 + DDA3937_RS04235 0.85 +1.1 935,734 - DDA3937_RS04235 0.85 -0.1 935,736 + DDA3937_RS04235 0.86 +3.0 935,736 + DDA3937_RS04235 0.86 -0.3 935,736 + DDA3937_RS04235 0.86 +1.7 935,736 + DDA3937_RS04235 0.86 +2.2 935,736 + DDA3937_RS04235 0.86 +1.9 935,737 - DDA3937_RS04235 0.86 +0.3 935,737 - DDA3937_RS04235 0.86 +0.3 935,737 - DDA3937_RS04235 0.86 +0.1 935,737 - DDA3937_RS04235 0.86 -0.1 935,772 + -0.6 935,772 + -0.9 935,773 - +0.7 935,773 - +1.4 935,790 + -1.1 935,790 + +0.1 935,791 - -0.6 935,791 - -0.1 935,864 + DDA3937_RS04240 0.29 -1.1 935,865 - DDA3937_RS04240 0.29 -0.3 935,929 + DDA3937_RS04240 0.48 +0.5 935,975 + DDA3937_RS04240 0.61 +0.1 935,996 + DDA3937_RS04240 0.68 -1.2 935,996 + DDA3937_RS04240 0.68 -0.5 935,996 + DDA3937_RS04240 0.68 -0.4 935,997 - DDA3937_RS04240 0.68 -0.6 936,249 - DDA3937_RS04245 0.40 -0.6 936,249 - DDA3937_RS04245 0.40 -0.6 936,302 + DDA3937_RS04245 0.55 +0.4 936,303 - DDA3937_RS04245 0.55 +0.1 936,355 - DDA3937_RS04245 0.70 -0.1 936,355 - DDA3937_RS04245 0.70 -0.1 936,358 - DDA3937_RS04245 0.71 +0.6 936,392 - DDA3937_RS04245 0.80 -0.1 936,392 - DDA3937_RS04245 0.80 -0.4 936,425 + DDA3937_RS04245 0.89 -1.2 936,461 - -0.1 936,482 - -0.6 936,553 + -2.0 936,554 - -1.5 936,554 - -1.3 936,562 - -0.1 936,562 - -0.7 936,574 - +0.1 936,574 - +0.8 936,574 - -1.9 936,606 + -1.3 936,607 - +1.0 936,607 - -1.2 936,658 + DDA3937_RS04250 0.24 -1.3 936,659 - DDA3937_RS04250 0.25 -1.4 936,673 - DDA3937_RS04250 0.30 -1.1 936,693 + DDA3937_RS04250 0.38 -2.7 936,694 - DDA3937_RS04250 0.38 -0.3 936,694 - DDA3937_RS04250 0.38 +0.3 936,694 - DDA3937_RS04250 0.38 -1.8 936,715 + DDA3937_RS04250 0.47 +0.7 936,715 + DDA3937_RS04250 0.47 +0.1 936,716 - DDA3937_RS04250 0.47 +0.0 936,716 - DDA3937_RS04250 0.47 -0.5 936,716 - DDA3937_RS04250 0.47 +0.1 936,716 - DDA3937_RS04250 0.47 -0.6
Or see this region's nucleotide sequence