Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04215 and DDA3937_RS04220 overlap by 4 nucleotides DDA3937_RS04220 and DDA3937_RS04225 are separated by 2 nucleotides DDA3937_RS04225 and DDA3937_RS04230 overlap by 4 nucleotides DDA3937_RS04230 and DDA3937_RS04235 are separated by 8 nucleotides DDA3937_RS04235 and DDA3937_RS04240 overlap by 14 nucleotides
DDA3937_RS04215: DDA3937_RS04215 - phage tail protein, at 932,696 to 933,193
_RS04215
DDA3937_RS04220: DDA3937_RS04220 - hypothetical protein, at 933,190 to 933,894
_RS04220
DDA3937_RS04225: DDA3937_RS04225 - DUF2586 domain-containing protein, at 933,897 to 935,012
_RS04225
DDA3937_RS04230: DDA3937_RS04230 - DUF2597 family protein, at 935,009 to 935,464
_RS04230
DDA3937_RS04235: DDA3937_RS04235 - phage holin family protein, at 935,473 to 935,778
_RS04235
DDA3937_RS04240: DDA3937_RS04240 - M15 family metallopeptidase, at 935,765 to 936,106
_RS04240
Position (kb) 933
934
935
936 Strain fitness (log2 ratio) -1
0
1
2
3 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.951 kb on + strand, within DDA3937_RS04215 at 932.952 kb on - strand, within DDA3937_RS04215 at 932.952 kb on - strand, within DDA3937_RS04215 at 933.284 kb on + strand, within DDA3937_RS04220 at 933.466 kb on + strand, within DDA3937_RS04220 at 933.467 kb on - strand, within DDA3937_RS04220 at 933.470 kb on + strand, within DDA3937_RS04220 at 933.551 kb on + strand, within DDA3937_RS04220 at 933.551 kb on + strand, within DDA3937_RS04220 at 933.551 kb on + strand, within DDA3937_RS04220 at 933.552 kb on - strand, within DDA3937_RS04220 at 933.726 kb on - strand, within DDA3937_RS04220 at 933.726 kb on - strand, within DDA3937_RS04220 at 933.726 kb on - strand, within DDA3937_RS04220 at 933.726 kb on - strand, within DDA3937_RS04220 at 933.735 kb on + strand, within DDA3937_RS04220 at 933.735 kb on + strand, within DDA3937_RS04220 at 933.736 kb on - strand, within DDA3937_RS04220 at 933.736 kb on - strand, within DDA3937_RS04220 at 933.842 kb on + strand at 933.893 kb on - strand at 933.937 kb on + strand at 933.937 kb on + strand at 933.937 kb on + strand at 933.937 kb on + strand at 933.938 kb on - strand at 933.938 kb on - strand at 933.938 kb on - strand at 933.938 kb on - strand at 933.938 kb on - strand at 934.023 kb on - strand, within DDA3937_RS04225 at 934.252 kb on + strand, within DDA3937_RS04225 at 934.252 kb on + strand, within DDA3937_RS04225 at 934.252 kb on + strand, within DDA3937_RS04225 at 934.341 kb on + strand, within DDA3937_RS04225 at 934.341 kb on + strand, within DDA3937_RS04225 at 934.342 kb on - strand, within DDA3937_RS04225 at 934.345 kb on + strand, within DDA3937_RS04225 at 934.359 kb on - strand, within DDA3937_RS04225 at 934.359 kb on - strand, within DDA3937_RS04225 at 934.568 kb on - strand, within DDA3937_RS04225 at 934.590 kb on + strand, within DDA3937_RS04225 at 934.617 kb on + strand, within DDA3937_RS04225 at 934.617 kb on + strand, within DDA3937_RS04225 at 934.626 kb on + strand, within DDA3937_RS04225 at 934.627 kb on - strand, within DDA3937_RS04225 at 934.629 kb on + strand, within DDA3937_RS04225 at 934.630 kb on - strand, within DDA3937_RS04225 at 934.630 kb on - strand, within DDA3937_RS04225 at 934.630 kb on - strand, within DDA3937_RS04225 at 934.671 kb on + strand, within DDA3937_RS04225 at 934.797 kb on + strand, within DDA3937_RS04225 at 934.797 kb on + strand, within DDA3937_RS04225 at 934.798 kb on - strand, within DDA3937_RS04225 at 934.798 kb on - strand, within DDA3937_RS04225 at 934.944 kb on - strand at 934.947 kb on + strand at 934.947 kb on + strand at 934.947 kb on + strand at 934.948 kb on - strand at 934.948 kb on - strand at 934.948 kb on - strand at 934.988 kb on + strand at 934.988 kb on + strand at 934.989 kb on - strand at 934.989 kb on - strand at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.178 kb on + strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.179 kb on - strand, within DDA3937_RS04230 at 935.183 kb on - strand, within DDA3937_RS04230 at 935.265 kb on - strand, within DDA3937_RS04230 at 935.377 kb on + strand, within DDA3937_RS04230 at 935.378 kb on - strand, within DDA3937_RS04230 at 935.378 kb on - strand, within DDA3937_RS04230 at 935.483 kb on - strand at 935.504 kb on + strand, within DDA3937_RS04235 at 935.535 kb on + strand, within DDA3937_RS04235 at 935.733 kb on + strand, within DDA3937_RS04235 at 935.734 kb on - strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.736 kb on + strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.737 kb on - strand, within DDA3937_RS04235 at 935.772 kb on + strand at 935.772 kb on + strand at 935.773 kb on - strand at 935.773 kb on - strand at 935.790 kb on + strand at 935.790 kb on + strand at 935.791 kb on - strand at 935.791 kb on - strand at 935.864 kb on + strand, within DDA3937_RS04240 at 935.865 kb on - strand, within DDA3937_RS04240 at 935.929 kb on + strand, within DDA3937_RS04240 at 935.975 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.996 kb on + strand, within DDA3937_RS04240 at 935.997 kb on - strand, within DDA3937_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 932,951 + DDA3937_RS04215 0.51 +0.7 932,951 + DDA3937_RS04215 0.51 +1.9 932,951 + DDA3937_RS04215 0.51 +3.2 932,951 + DDA3937_RS04215 0.51 -0.3 932,952 - DDA3937_RS04215 0.51 -0.3 932,952 - DDA3937_RS04215 0.51 -0.9 933,284 + DDA3937_RS04220 0.13 -0.4 933,466 + DDA3937_RS04220 0.39 -0.7 933,467 - DDA3937_RS04220 0.39 +0.8 933,470 + DDA3937_RS04220 0.40 +0.1 933,551 + DDA3937_RS04220 0.51 +1.5 933,551 + DDA3937_RS04220 0.51 +1.3 933,551 + DDA3937_RS04220 0.51 +0.4 933,552 - DDA3937_RS04220 0.51 +0.4 933,726 - DDA3937_RS04220 0.76 +0.7 933,726 - DDA3937_RS04220 0.76 -0.0 933,726 - DDA3937_RS04220 0.76 -0.7 933,726 - DDA3937_RS04220 0.76 -0.8 933,735 + DDA3937_RS04220 0.77 +0.5 933,735 + DDA3937_RS04220 0.77 +0.1 933,736 - DDA3937_RS04220 0.77 +0.5 933,736 - DDA3937_RS04220 0.77 +0.7 933,842 + +0.7 933,893 - +0.0 933,937 + +0.1 933,937 + -0.3 933,937 + +1.1 933,937 + +1.1 933,938 - -0.1 933,938 - +0.0 933,938 - +1.7 933,938 - +1.6 933,938 - +0.8 934,023 - DDA3937_RS04225 0.11 -0.6 934,252 + DDA3937_RS04225 0.32 +0.7 934,252 + DDA3937_RS04225 0.32 -0.7 934,252 + DDA3937_RS04225 0.32 +0.9 934,341 + DDA3937_RS04225 0.40 -0.1 934,341 + DDA3937_RS04225 0.40 +1.2 934,342 - DDA3937_RS04225 0.40 +1.0 934,345 + DDA3937_RS04225 0.40 +1.0 934,359 - DDA3937_RS04225 0.41 -0.7 934,359 - DDA3937_RS04225 0.41 -0.5 934,568 - DDA3937_RS04225 0.60 -0.5 934,590 + DDA3937_RS04225 0.62 +0.6 934,617 + DDA3937_RS04225 0.65 +1.1 934,617 + DDA3937_RS04225 0.65 +2.4 934,626 + DDA3937_RS04225 0.65 +0.5 934,627 - DDA3937_RS04225 0.65 -1.7 934,629 + DDA3937_RS04225 0.66 +0.1 934,630 - DDA3937_RS04225 0.66 +1.0 934,630 - DDA3937_RS04225 0.66 +0.4 934,630 - DDA3937_RS04225 0.66 +1.9 934,671 + DDA3937_RS04225 0.69 +2.1 934,797 + DDA3937_RS04225 0.81 +1.0 934,797 + DDA3937_RS04225 0.81 +0.8 934,798 - DDA3937_RS04225 0.81 +0.0 934,798 - DDA3937_RS04225 0.81 +2.6 934,944 - +1.1 934,947 + +2.5 934,947 + +1.9 934,947 + +0.9 934,948 - +0.6 934,948 - -0.5 934,948 - -0.5 934,988 + +0.7 934,988 + +1.7 934,989 - -1.3 934,989 - +0.5 935,178 + DDA3937_RS04230 0.37 +0.8 935,178 + DDA3937_RS04230 0.37 +2.1 935,178 + DDA3937_RS04230 0.37 +0.3 935,178 + DDA3937_RS04230 0.37 +0.5 935,178 + DDA3937_RS04230 0.37 +2.2 935,179 - DDA3937_RS04230 0.37 -1.7 935,179 - DDA3937_RS04230 0.37 -0.7 935,179 - DDA3937_RS04230 0.37 +2.0 935,179 - DDA3937_RS04230 0.37 -0.1 935,179 - DDA3937_RS04230 0.37 -1.1 935,179 - DDA3937_RS04230 0.37 -0.7 935,179 - DDA3937_RS04230 0.37 +0.4 935,179 - DDA3937_RS04230 0.37 +0.3 935,179 - DDA3937_RS04230 0.37 -0.3 935,179 - DDA3937_RS04230 0.37 +0.9 935,183 - DDA3937_RS04230 0.38 +0.2 935,265 - DDA3937_RS04230 0.56 -0.2 935,377 + DDA3937_RS04230 0.81 +1.0 935,378 - DDA3937_RS04230 0.81 -1.1 935,378 - DDA3937_RS04230 0.81 -0.3 935,483 - -0.3 935,504 + DDA3937_RS04235 0.10 +1.8 935,535 + DDA3937_RS04235 0.20 +3.1 935,733 + DDA3937_RS04235 0.85 +1.1 935,734 - DDA3937_RS04235 0.85 -0.1 935,736 + DDA3937_RS04235 0.86 +3.0 935,736 + DDA3937_RS04235 0.86 -0.3 935,736 + DDA3937_RS04235 0.86 +1.7 935,736 + DDA3937_RS04235 0.86 +2.2 935,736 + DDA3937_RS04235 0.86 +1.9 935,737 - DDA3937_RS04235 0.86 +0.3 935,737 - DDA3937_RS04235 0.86 +0.3 935,737 - DDA3937_RS04235 0.86 +0.1 935,737 - DDA3937_RS04235 0.86 -0.1 935,772 + -0.6 935,772 + -0.9 935,773 - +0.7 935,773 - +1.4 935,790 + -1.1 935,790 + +0.1 935,791 - -0.6 935,791 - -0.1 935,864 + DDA3937_RS04240 0.29 -1.1 935,865 - DDA3937_RS04240 0.29 -0.3 935,929 + DDA3937_RS04240 0.48 +0.5 935,975 + DDA3937_RS04240 0.61 +0.1 935,996 + DDA3937_RS04240 0.68 -1.2 935,996 + DDA3937_RS04240 0.68 -0.5 935,996 + DDA3937_RS04240 0.68 -0.4 935,997 - DDA3937_RS04240 0.68 -0.6
Or see this region's nucleotide sequence