Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03690 and DDA3937_RS03695 are separated by 158 nucleotides DDA3937_RS03695 and DDA3937_RS03700 are separated by 152 nucleotides DDA3937_RS03700 and DDA3937_RS03705 are separated by 138 nucleotides
DDA3937_RS03690: DDA3937_RS03690 - AAA family ATPase, at 816,783 to 817,532
_RS03690
DDA3937_RS03695: DDA3937_RS03695 - hypothetical protein, at 817,691 to 818,161
_RS03695
DDA3937_RS03700: DDA3937_RS03700 - inositol 2-dehydrogenase, at 818,314 to 819,300
_RS03700
DDA3937_RS03705: DDA3937_RS03705 - substrate-binding domain-containing protein, at 819,439 to 820,377
_RS03705
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 817.428 kb on - strand, within DDA3937_RS03690 at 817.445 kb on + strand, within DDA3937_RS03690 at 817.505 kb on + strand at 817.515 kb on - strand at 817.515 kb on - strand at 817.599 kb on + strand at 817.660 kb on + strand at 817.660 kb on + strand at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 818.026 kb on + strand, within DDA3937_RS03695 at 818.051 kb on + strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.069 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.246 kb on + strand at 818.247 kb on - strand at 818.272 kb on + strand at 818.273 kb on - strand at 818.273 kb on - strand at 818.309 kb on + strand at 818.310 kb on - strand at 818.320 kb on - strand at 818.399 kb on - strand at 818.445 kb on + strand, within DDA3937_RS03700 at 818.449 kb on + strand, within DDA3937_RS03700 at 818.450 kb on - strand, within DDA3937_RS03700 at 818.499 kb on - strand, within DDA3937_RS03700 at 818.754 kb on + strand, within DDA3937_RS03700 at 818.755 kb on - strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.789 kb on - strand, within DDA3937_RS03700 at 819.066 kb on + strand, within DDA3937_RS03700 at 819.157 kb on + strand, within DDA3937_RS03700 at 819.202 kb on - strand at 819.244 kb on + strand at 819.245 kb on - strand at 819.304 kb on - strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.344 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.351 kb on + strand at 819.352 kb on - strand at 819.352 kb on - strand at 819.355 kb on + strand at 819.355 kb on + strand at 819.356 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.369 kb on - strand at 819.385 kb on + strand at 819.385 kb on + strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.386 kb on - strand at 819.389 kb on + strand at 819.389 kb on + strand at 819.389 kb on + strand at 819.390 kb on - strand at 819.390 kb on - strand at 819.390 kb on - strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.410 kb on + strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.411 kb on - strand at 819.414 kb on + strand at 819.414 kb on + strand at 819.414 kb on + strand at 819.415 kb on - strand at 819.415 kb on - strand at 819.415 kb on - strand at 819.424 kb on + strand at 819.425 kb on - strand at 819.425 kb on - strand at 819.528 kb on + strand at 819.528 kb on + strand at 819.529 kb on - strand at 819.534 kb on + strand, within DDA3937_RS03705 at 819.535 kb on - strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.823 kb on + strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.824 kb on - strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.973 kb on + strand, within DDA3937_RS03705 at 819.974 kb on - strand, within DDA3937_RS03705 at 820.057 kb on - strand, within DDA3937_RS03705 at 820.275 kb on + strand, within DDA3937_RS03705
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 817,428 - DDA3937_RS03690 0.86 -1.3 817,445 + DDA3937_RS03690 0.88 -0.2 817,505 + -1.1 817,515 - +0.4 817,515 - +2.2 817,599 + +2.3 817,660 + -1.8 817,660 + +1.9 817,769 + DDA3937_RS03695 0.17 +1.3 817,769 + DDA3937_RS03695 0.17 +0.5 817,769 + DDA3937_RS03695 0.17 +0.6 818,026 + DDA3937_RS03695 0.71 -0.0 818,051 + DDA3937_RS03695 0.76 +1.8 818,052 - DDA3937_RS03695 0.77 -0.0 818,052 - DDA3937_RS03695 0.77 +0.2 818,052 - DDA3937_RS03695 0.77 -0.6 818,052 - DDA3937_RS03695 0.77 +0.8 818,069 + DDA3937_RS03695 0.80 -1.0 818,086 + DDA3937_RS03695 0.84 -0.7 818,086 + DDA3937_RS03695 0.84 -0.3 818,161 + -0.6 818,161 + -0.8 818,161 + +0.9 818,161 + +0.5 818,162 - -1.1 818,162 - -1.0 818,162 - +0.3 818,162 - -1.6 818,162 - -1.7 818,162 - -0.1 818,162 - -0.4 818,246 + -0.2 818,247 - -2.0 818,272 + +0.2 818,273 - -0.6 818,273 - +2.2 818,309 + -2.0 818,310 - -1.0 818,320 - -0.4 818,399 - -2.0 818,445 + DDA3937_RS03700 0.13 -0.8 818,449 + DDA3937_RS03700 0.14 -0.5 818,450 - DDA3937_RS03700 0.14 -1.2 818,499 - DDA3937_RS03700 0.19 -0.5 818,754 + DDA3937_RS03700 0.45 -1.1 818,755 - DDA3937_RS03700 0.45 -2.0 818,788 + DDA3937_RS03700 0.48 +0.3 818,788 + DDA3937_RS03700 0.48 -2.1 818,789 - DDA3937_RS03700 0.48 -1.2 819,066 + DDA3937_RS03700 0.76 -0.6 819,157 + DDA3937_RS03700 0.85 -0.3 819,202 - -1.2 819,244 + -1.2 819,245 - -1.3 819,304 - +0.0 819,338 + +1.2 819,338 + -0.3 819,338 + -0.0 819,338 + +0.4 819,339 - -1.2 819,339 - +0.5 819,339 - -1.6 819,339 - -0.8 819,344 + +0.3 819,351 + -0.4 819,351 + -1.1 819,351 + +0.3 819,351 + -0.6 819,351 + -2.0 819,352 - -1.0 819,352 - -0.3 819,355 + -0.6 819,355 + -0.9 819,356 - -0.5 819,369 - +2.5 819,369 - -0.0 819,369 - -0.0 819,369 - -1.7 819,369 - -0.2 819,369 - -0.4 819,385 + +0.2 819,385 + -0.4 819,386 - -1.8 819,386 - +0.2 819,386 - +2.3 819,386 - -0.6 819,389 + -0.4 819,389 + -1.8 819,389 + +2.2 819,390 - +1.2 819,390 - +0.5 819,390 - -0.5 819,410 + +5.7 819,410 + -1.4 819,410 + +0.7 819,410 + +0.8 819,410 + -0.8 819,410 + -1.8 819,410 + +1.2 819,411 - -0.2 819,411 - -0.0 819,411 - +0.3 819,411 - -2.3 819,411 - -0.2 819,411 - +0.4 819,411 - -0.6 819,411 - +2.4 819,411 - +2.1 819,414 + +0.8 819,414 + -2.3 819,414 + -1.1 819,415 - +0.3 819,415 - -2.1 819,415 - -0.4 819,424 + -0.8 819,425 - +0.3 819,425 - -1.7 819,528 + +0.3 819,528 + -0.6 819,529 - +0.2 819,534 + DDA3937_RS03705 0.10 -2.2 819,535 - DDA3937_RS03705 0.10 -0.0 819,823 + DDA3937_RS03705 0.41 +0.7 819,823 + DDA3937_RS03705 0.41 -1.6 819,823 + DDA3937_RS03705 0.41 -1.1 819,823 + DDA3937_RS03705 0.41 -0.5 819,824 - DDA3937_RS03705 0.41 +1.0 819,824 - DDA3937_RS03705 0.41 -1.3 819,824 - DDA3937_RS03705 0.41 -1.1 819,824 - DDA3937_RS03705 0.41 -0.7 819,824 - DDA3937_RS03705 0.41 +0.2 819,824 - DDA3937_RS03705 0.41 -0.7 819,824 - DDA3937_RS03705 0.41 +0.4 819,973 + DDA3937_RS03705 0.57 -0.1 819,973 + DDA3937_RS03705 0.57 +0.1 819,974 - DDA3937_RS03705 0.57 -0.1 820,057 - DDA3937_RS03705 0.66 -1.5 820,275 + DDA3937_RS03705 0.89 -0.2
Or see this region's nucleotide sequence