Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03655 and DDA3937_RS03660 are separated by 77 nucleotides DDA3937_RS03660 and DDA3937_RS03665 are separated by 212 nucleotides
DDA3937_RS03655: DDA3937_RS03655 - LysR family transcriptional regulator, at 807,074 to 807,961
_RS03655
DDA3937_RS03660: DDA3937_RS03660 - 2,5-didehydrogluconate reductase DkgB, at 808,039 to 808,845
_RS03660
DDA3937_RS03665: DDA3937_RS03665 - MurR/RpiR family transcriptional regulator, at 809,058 to 809,915
_RS03665
Position (kb) 808
809 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 807.269 kb on + strand at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.291 kb on + strand, within DDA3937_RS03655 at 807.292 kb on - strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.294 kb on + strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.295 kb on - strand, within DDA3937_RS03655 at 807.553 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.560 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.587 kb on + strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.588 kb on - strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.707 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.797 kb on + strand, within DDA3937_RS03655 at 807.798 kb on - strand, within DDA3937_RS03655 at 807.887 kb on + strand at 807.890 kb on + strand at 807.891 kb on - strand at 807.891 kb on - strand at 807.959 kb on + strand at 807.960 kb on - strand at 807.988 kb on + strand at 807.989 kb on - strand at 807.989 kb on - strand at 808.179 kb on + strand, within DDA3937_RS03660 at 808.278 kb on + strand, within DDA3937_RS03660 at 808.313 kb on + strand, within DDA3937_RS03660 at 808.313 kb on + strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.314 kb on - strand, within DDA3937_RS03660 at 808.577 kb on + strand, within DDA3937_RS03660 at 808.578 kb on - strand, within DDA3937_RS03660 at 808.667 kb on + strand, within DDA3937_RS03660 at 808.667 kb on + strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.668 kb on - strand, within DDA3937_RS03660 at 808.731 kb on - strand at 808.731 kb on - strand, within DDA3937_RS03660 at 808.731 kb on - strand, within DDA3937_RS03660 at 808.795 kb on + strand at 808.795 kb on + strand at 808.795 kb on + strand at 808.796 kb on - strand at 808.796 kb on - strand at 808.796 kb on - strand at 808.806 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.818 kb on + strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.819 kb on - strand at 808.870 kb on + strand at 808.947 kb on + strand at 808.960 kb on + strand at 808.961 kb on - strand at 808.972 kb on + strand at 808.973 kb on - strand at 808.973 kb on - strand at 809.042 kb on - strand at 809.308 kb on + strand, within DDA3937_RS03665 at 809.309 kb on - strand, within DDA3937_RS03665 at 809.309 kb on - strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.358 kb on + strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.359 kb on - strand, within DDA3937_RS03665 at 809.428 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.437 kb on + strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.438 kb on - strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.476 kb on + strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.477 kb on - strand, within DDA3937_RS03665 at 809.653 kb on + strand, within DDA3937_RS03665 at 809.654 kb on - strand, within DDA3937_RS03665 at 809.654 kb on - strand, within DDA3937_RS03665 at 809.654 kb on - strand, within DDA3937_RS03665 at 809.758 kb on - strand, within DDA3937_RS03665 at 809.758 kb on - strand, within DDA3937_RS03665 at 809.810 kb on + strand, within DDA3937_RS03665 at 809.810 kb on + strand, within DDA3937_RS03665 at 809.811 kb on - strand, within DDA3937_RS03665 at 809.824 kb on + strand, within DDA3937_RS03665 at 809.825 kb on - strand, within DDA3937_RS03665 at 809.825 kb on - strand, within DDA3937_RS03665 at 809.825 kb on - strand, within DDA3937_RS03665
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 807,269 + +1.9 807,291 + DDA3937_RS03655 0.24 +0.2 807,291 + DDA3937_RS03655 0.24 -0.7 807,291 + DDA3937_RS03655 0.24 +0.2 807,291 + DDA3937_RS03655 0.24 -1.3 807,292 - DDA3937_RS03655 0.25 -0.1 807,294 + DDA3937_RS03655 0.25 -0.1 807,294 + DDA3937_RS03655 0.25 -2.0 807,294 + DDA3937_RS03655 0.25 +0.7 807,294 + DDA3937_RS03655 0.25 +2.8 807,294 + DDA3937_RS03655 0.25 -1.2 807,294 + DDA3937_RS03655 0.25 +0.3 807,294 + DDA3937_RS03655 0.25 +0.7 807,294 + DDA3937_RS03655 0.25 -0.2 807,295 - DDA3937_RS03655 0.25 -1.3 807,295 - DDA3937_RS03655 0.25 +1.1 807,295 - DDA3937_RS03655 0.25 +0.2 807,553 + DDA3937_RS03655 0.54 -0.5 807,560 + DDA3937_RS03655 0.55 -0.2 807,560 + DDA3937_RS03655 0.55 -0.2 807,587 + DDA3937_RS03655 0.58 -0.2 807,587 + DDA3937_RS03655 0.58 -0.4 807,587 + DDA3937_RS03655 0.58 +0.7 807,587 + DDA3937_RS03655 0.58 -0.9 807,588 - DDA3937_RS03655 0.58 -1.6 807,588 - DDA3937_RS03655 0.58 +0.3 807,588 - DDA3937_RS03655 0.58 +0.4 807,588 - DDA3937_RS03655 0.58 -0.9 807,588 - DDA3937_RS03655 0.58 +0.2 807,707 + DDA3937_RS03655 0.71 -0.2 807,707 + DDA3937_RS03655 0.71 -0.2 807,797 + DDA3937_RS03655 0.81 +0.1 807,797 + DDA3937_RS03655 0.81 -1.2 807,797 + DDA3937_RS03655 0.81 -0.2 807,798 - DDA3937_RS03655 0.82 -0.8 807,887 + -1.4 807,890 + -0.9 807,891 - -0.1 807,891 - -0.1 807,959 + -0.2 807,960 - -0.8 807,988 + -0.4 807,989 - +0.1 807,989 - -1.2 808,179 + DDA3937_RS03660 0.17 -1.2 808,278 + DDA3937_RS03660 0.30 +0.2 808,313 + DDA3937_RS03660 0.34 +0.6 808,313 + DDA3937_RS03660 0.34 -0.2 808,314 - DDA3937_RS03660 0.34 +0.8 808,314 - DDA3937_RS03660 0.34 -0.4 808,314 - DDA3937_RS03660 0.34 +0.2 808,314 - DDA3937_RS03660 0.34 -2.5 808,314 - DDA3937_RS03660 0.34 +0.4 808,314 - DDA3937_RS03660 0.34 -0.4 808,314 - DDA3937_RS03660 0.34 -1.0 808,314 - DDA3937_RS03660 0.34 +2.2 808,577 + DDA3937_RS03660 0.67 -0.2 808,578 - DDA3937_RS03660 0.67 +1.0 808,667 + DDA3937_RS03660 0.78 -0.4 808,667 + DDA3937_RS03660 0.78 +0.0 808,668 - DDA3937_RS03660 0.78 -0.3 808,668 - DDA3937_RS03660 0.78 +1.5 808,668 - DDA3937_RS03660 0.78 -0.3 808,731 - +0.2 808,731 - DDA3937_RS03660 0.86 -1.2 808,731 - DDA3937_RS03660 0.86 +0.3 808,795 + +0.1 808,795 + -0.3 808,795 + +0.4 808,796 - -0.2 808,796 - -0.6 808,796 - -1.5 808,806 + +0.7 808,818 + -1.1 808,818 + -2.4 808,818 + +1.0 808,818 + -2.8 808,818 + +0.3 808,818 + +1.8 808,818 + +0.7 808,819 - +1.8 808,819 - -0.4 808,819 - +0.6 808,819 - +0.4 808,870 + +0.4 808,947 + -0.5 808,960 + -0.3 808,961 - -0.4 808,972 + +0.0 808,973 - -0.8 808,973 - -1.5 809,042 - +0.6 809,308 + DDA3937_RS03665 0.29 -0.1 809,309 - DDA3937_RS03665 0.29 -0.6 809,309 - DDA3937_RS03665 0.29 -0.1 809,358 + DDA3937_RS03665 0.35 -0.5 809,358 + DDA3937_RS03665 0.35 -0.5 809,358 + DDA3937_RS03665 0.35 -0.2 809,358 + DDA3937_RS03665 0.35 +0.2 809,359 - DDA3937_RS03665 0.35 +1.4 809,359 - DDA3937_RS03665 0.35 +1.0 809,359 - DDA3937_RS03665 0.35 -0.8 809,359 - DDA3937_RS03665 0.35 -1.5 809,359 - DDA3937_RS03665 0.35 -0.1 809,359 - DDA3937_RS03665 0.35 +0.2 809,359 - DDA3937_RS03665 0.35 -0.8 809,428 + DDA3937_RS03665 0.43 -1.4 809,437 + DDA3937_RS03665 0.44 +1.0 809,437 + DDA3937_RS03665 0.44 -0.9 809,437 + DDA3937_RS03665 0.44 +0.9 809,437 + DDA3937_RS03665 0.44 -0.3 809,437 + DDA3937_RS03665 0.44 -0.7 809,438 - DDA3937_RS03665 0.44 -0.5 809,438 - DDA3937_RS03665 0.44 -1.5 809,438 - DDA3937_RS03665 0.44 +1.0 809,438 - DDA3937_RS03665 0.44 -3.9 809,438 - DDA3937_RS03665 0.44 +0.6 809,438 - DDA3937_RS03665 0.44 -0.3 809,476 + DDA3937_RS03665 0.49 -2.2 809,476 + DDA3937_RS03665 0.49 -1.9 809,476 + DDA3937_RS03665 0.49 -0.7 809,476 + DDA3937_RS03665 0.49 +0.3 809,476 + DDA3937_RS03665 0.49 -0.1 809,476 + DDA3937_RS03665 0.49 -0.2 809,477 - DDA3937_RS03665 0.49 +0.9 809,477 - DDA3937_RS03665 0.49 -1.2 809,477 - DDA3937_RS03665 0.49 +0.8 809,477 - DDA3937_RS03665 0.49 -1.9 809,477 - DDA3937_RS03665 0.49 -0.0 809,653 + DDA3937_RS03665 0.69 -0.2 809,654 - DDA3937_RS03665 0.69 +0.3 809,654 - DDA3937_RS03665 0.69 -0.7 809,654 - DDA3937_RS03665 0.69 -0.6 809,758 - DDA3937_RS03665 0.82 -0.4 809,758 - DDA3937_RS03665 0.82 -0.4 809,810 + DDA3937_RS03665 0.88 -0.7 809,810 + DDA3937_RS03665 0.88 +0.0 809,811 - DDA3937_RS03665 0.88 -0.5 809,824 + DDA3937_RS03665 0.89 -0.0 809,825 - DDA3937_RS03665 0.89 +0.8 809,825 - DDA3937_RS03665 0.89 -0.6 809,825 - DDA3937_RS03665 0.89 +0.5
Or see this region's nucleotide sequence