Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03475

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03470 and DDA3937_RS03475 overlap by 4 nucleotidesDDA3937_RS03475 and DDA3937_RS03480 are separated by 121 nucleotides DDA3937_RS03470: DDA3937_RS03470 - cation/acetate symporter ActP, at 759,540 to 761,198 _RS03470 DDA3937_RS03475: DDA3937_RS03475 - DUF485 domain-containing protein, at 761,195 to 761,506 _RS03475 DDA3937_RS03480: DDA3937_RS03480 - acetate--CoA ligase, at 761,628 to 763,589 _RS03480 Position (kb) 761 762Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 760.268 kb on - strand, within DDA3937_RS03470at 760.268 kb on - strand, within DDA3937_RS03470at 760.273 kb on + strand, within DDA3937_RS03470at 760.273 kb on + strand, within DDA3937_RS03470at 760.274 kb on - strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.350 kb on + strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.351 kb on - strand, within DDA3937_RS03470at 760.352 kb on + strand, within DDA3937_RS03470at 760.352 kb on + strand, within DDA3937_RS03470at 760.352 kb on + strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.353 kb on - strand, within DDA3937_RS03470at 760.448 kb on + strand, within DDA3937_RS03470at 760.548 kb on + strand, within DDA3937_RS03470at 760.548 kb on + strand, within DDA3937_RS03470at 760.548 kb on + strand, within DDA3937_RS03470at 760.555 kb on - strand, within DDA3937_RS03470at 760.572 kb on + strand, within DDA3937_RS03470at 760.605 kb on + strand, within DDA3937_RS03470at 760.605 kb on + strand, within DDA3937_RS03470at 760.606 kb on - strand, within DDA3937_RS03470at 760.606 kb on - strand, within DDA3937_RS03470at 760.606 kb on - strand, within DDA3937_RS03470at 760.606 kb on - strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.609 kb on + strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strandat 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.610 kb on - strand, within DDA3937_RS03470at 760.647 kb on - strand, within DDA3937_RS03470at 760.651 kb on + strand, within DDA3937_RS03470at 760.651 kb on + strandat 760.651 kb on + strand, within DDA3937_RS03470at 760.651 kb on + strand, within DDA3937_RS03470at 760.651 kb on + strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.652 kb on - strand, within DDA3937_RS03470at 760.711 kb on + strand, within DDA3937_RS03470at 760.712 kb on - strand, within DDA3937_RS03470at 760.712 kb on - strand, within DDA3937_RS03470at 760.712 kb on - strand, within DDA3937_RS03470at 760.712 kb on - strand, within DDA3937_RS03470at 760.712 kb on - strand, within DDA3937_RS03470at 760.801 kb on + strand, within DDA3937_RS03470at 760.876 kb on + strand, within DDA3937_RS03470at 760.877 kb on - strand, within DDA3937_RS03470at 760.903 kb on + strand, within DDA3937_RS03470at 760.903 kb on + strand, within DDA3937_RS03470at 760.904 kb on - strand, within DDA3937_RS03470at 760.904 kb on - strand, within DDA3937_RS03470at 760.945 kb on + strand, within DDA3937_RS03470at 760.945 kb on + strand, within DDA3937_RS03470at 760.945 kb on + strand, within DDA3937_RS03470at 760.946 kb on - strand, within DDA3937_RS03470at 760.946 kb on - strand, within DDA3937_RS03470at 761.003 kb on - strand, within DDA3937_RS03470at 761.003 kb on - strand, within DDA3937_RS03470at 761.005 kb on + strand, within DDA3937_RS03470at 761.005 kb on + strand, within DDA3937_RS03470at 761.006 kb on - strand, within DDA3937_RS03470at 761.006 kb on - strand, within DDA3937_RS03470at 761.006 kb on - strand, within DDA3937_RS03470at 761.006 kb on - strand, within DDA3937_RS03470at 761.025 kb on - strand, within DDA3937_RS03470at 761.041 kb on + strandat 761.041 kb on + strandat 761.042 kb on - strandat 761.042 kb on - strandat 761.042 kb on - strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.050 kb on + strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.051 kb on - strandat 761.152 kb on - strandat 761.256 kb on + strand, within DDA3937_RS03475at 761.257 kb on - strand, within DDA3937_RS03475at 761.257 kb on - strand, within DDA3937_RS03475at 761.262 kb on + strand, within DDA3937_RS03475at 761.262 kb on + strand, within DDA3937_RS03475at 761.262 kb on + strand, within DDA3937_RS03475at 761.262 kb on + strand, within DDA3937_RS03475at 761.262 kb on + strand, within DDA3937_RS03475at 761.262 kb on + strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.263 kb on - strand, within DDA3937_RS03475at 761.266 kb on + strand, within DDA3937_RS03475at 761.267 kb on - strand, within DDA3937_RS03475at 761.287 kb on + strand, within DDA3937_RS03475at 761.287 kb on + strand, within DDA3937_RS03475at 761.303 kb on - strand, within DDA3937_RS03475at 761.462 kb on - strand, within DDA3937_RS03475at 761.491 kb on - strandat 761.510 kb on - strandat 761.525 kb on + strandat 761.526 kb on - strandat 761.587 kb on + strandat 761.587 kb on + strandat 761.629 kb on + strandat 761.705 kb on + strandat 761.861 kb on + strand, within DDA3937_RS03480at 761.862 kb on - strandat 761.863 kb on + strand, within DDA3937_RS03480at 761.863 kb on + strand, within DDA3937_RS03480at 761.863 kb on + strand, within DDA3937_RS03480at 761.863 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.905 kb on + strand, within DDA3937_RS03480at 761.906 kb on - strandat 761.906 kb on - strand, within DDA3937_RS03480at 761.906 kb on - strand, within DDA3937_RS03480at 761.906 kb on - strand, within DDA3937_RS03480at 761.911 kb on + strand, within DDA3937_RS03480at 761.912 kb on - strand, within DDA3937_RS03480at 761.912 kb on - strand, within DDA3937_RS03480at 761.912 kb on - strandat 762.061 kb on + strand, within DDA3937_RS03480at 762.061 kb on + strand, within DDA3937_RS03480at 762.062 kb on - strand, within DDA3937_RS03480at 762.062 kb on - strand, within DDA3937_RS03480at 762.062 kb on - strand, within DDA3937_RS03480at 762.064 kb on + strandat 762.064 kb on + strand, within DDA3937_RS03480at 762.065 kb on - strand, within DDA3937_RS03480at 762.103 kb on + strand, within DDA3937_RS03480at 762.103 kb on + strand, within DDA3937_RS03480at 762.103 kb on + strand, within DDA3937_RS03480at 762.103 kb on + strand, within DDA3937_RS03480at 762.103 kb on + strand, within DDA3937_RS03480at 762.103 kb on + strand, within DDA3937_RS03480at 762.104 kb on - strand, within DDA3937_RS03480at 762.104 kb on - strand, within DDA3937_RS03480at 762.104 kb on - strand, within DDA3937_RS03480at 762.127 kb on + strand, within DDA3937_RS03480at 762.127 kb on + strand, within DDA3937_RS03480at 762.127 kb on + strand, within DDA3937_RS03480at 762.128 kb on - strand, within DDA3937_RS03480at 762.397 kb on + strand, within DDA3937_RS03480at 762.397 kb on + strand, within DDA3937_RS03480at 762.397 kb on + strand, within DDA3937_RS03480at 762.397 kb on + strand, within DDA3937_RS03480at 762.398 kb on - strand, within DDA3937_RS03480

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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760,268 - DDA3937_RS03470 0.44 +1.2
760,268 - DDA3937_RS03470 0.44 -1.2
760,273 + DDA3937_RS03470 0.44 -0.3
760,273 + DDA3937_RS03470 0.44 +0.4
760,274 - DDA3937_RS03470 0.44 +1.1
760,350 + DDA3937_RS03470 0.49 -2.1
760,350 + DDA3937_RS03470 0.49 -0.2
760,350 + DDA3937_RS03470 0.49 -0.6
760,350 + DDA3937_RS03470 0.49 -1.2
760,350 + DDA3937_RS03470 0.49 -0.7
760,350 + DDA3937_RS03470 0.49 -0.7
760,350 + DDA3937_RS03470 0.49 -1.1
760,350 + DDA3937_RS03470 0.49 -0.4
760,350 + DDA3937_RS03470 0.49 -0.7
760,350 + DDA3937_RS03470 0.49 -0.0
760,350 + DDA3937_RS03470 0.49 -0.7
760,350 + DDA3937_RS03470 0.49 -0.1
760,350 + DDA3937_RS03470 0.49 +0.6
760,350 + DDA3937_RS03470 0.49 -1.8
760,350 + DDA3937_RS03470 0.49 -1.6
760,351 - DDA3937_RS03470 0.49 +0.2
760,351 - DDA3937_RS03470 0.49 -0.6
760,351 - DDA3937_RS03470 0.49 -0.2
760,351 - DDA3937_RS03470 0.49 -0.8
760,351 - DDA3937_RS03470 0.49 -1.0
760,351 - DDA3937_RS03470 0.49 -0.3
760,352 + DDA3937_RS03470 0.49 -0.8
760,352 + DDA3937_RS03470 0.49 +2.1
760,352 + DDA3937_RS03470 0.49 +1.2
760,353 - DDA3937_RS03470 0.49 -0.0
760,353 - DDA3937_RS03470 0.49 -0.4
760,353 - DDA3937_RS03470 0.49 +0.1
760,353 - DDA3937_RS03470 0.49 +2.8
760,448 + DDA3937_RS03470 0.55 -0.2
760,548 + DDA3937_RS03470 0.61 +0.6
760,548 + DDA3937_RS03470 0.61 +0.6
760,548 + DDA3937_RS03470 0.61 +1.6
760,555 - DDA3937_RS03470 0.61 +1.5
760,572 + DDA3937_RS03470 0.62 -1.6
760,605 + DDA3937_RS03470 0.64 -0.1
760,605 + DDA3937_RS03470 0.64 +0.7
760,606 - DDA3937_RS03470 0.64 -0.6
760,606 - DDA3937_RS03470 0.64 +1.4
760,606 - DDA3937_RS03470 0.64 +0.1
760,606 - DDA3937_RS03470 0.64 -1.0
760,609 + DDA3937_RS03470 0.64 -0.2
760,609 + DDA3937_RS03470 0.64 -0.1
760,609 + DDA3937_RS03470 0.64 -1.3
760,609 + DDA3937_RS03470 0.64 +0.4
760,609 + DDA3937_RS03470 0.64 -0.6
760,609 + DDA3937_RS03470 0.64 -1.1
760,609 + DDA3937_RS03470 0.64 -2.7
760,609 + DDA3937_RS03470 0.64 -1.0
760,610 - DDA3937_RS03470 0.64 +0.2
760,610 - DDA3937_RS03470 0.64 +0.1
760,610 - DDA3937_RS03470 0.64 +0.6
760,610 - DDA3937_RS03470 0.64 -1.3
760,610 - DDA3937_RS03470 0.64 +0.6
760,610 - DDA3937_RS03470 0.64 -0.0
760,610 - DDA3937_RS03470 0.64 -0.5
760,610 - DDA3937_RS03470 0.64 +0.2
760,610 - DDA3937_RS03470 0.64 -0.3
760,610 - DDA3937_RS03470 0.64 -2.0
760,610 - DDA3937_RS03470 0.64 -2.1
760,610 - +0.6
760,610 - DDA3937_RS03470 0.64 +0.2
760,610 - DDA3937_RS03470 0.64 -0.4
760,610 - DDA3937_RS03470 0.64 -0.6
760,647 - DDA3937_RS03470 0.67 -0.5
760,651 + DDA3937_RS03470 0.67 -1.4
760,651 + +1.2
760,651 + DDA3937_RS03470 0.67 -0.8
760,651 + DDA3937_RS03470 0.67 -0.6
760,651 + DDA3937_RS03470 0.67 -1.6
760,652 - DDA3937_RS03470 0.67 -0.6
760,652 - DDA3937_RS03470 0.67 +1.0
760,652 - DDA3937_RS03470 0.67 -2.0
760,652 - DDA3937_RS03470 0.67 -1.0
760,652 - DDA3937_RS03470 0.67 -1.4
760,652 - DDA3937_RS03470 0.67 -0.2
760,652 - DDA3937_RS03470 0.67 -1.1
760,711 + DDA3937_RS03470 0.71 -0.2
760,712 - DDA3937_RS03470 0.71 +0.1
760,712 - DDA3937_RS03470 0.71 +0.3
760,712 - DDA3937_RS03470 0.71 +0.4
760,712 - DDA3937_RS03470 0.71 -0.5
760,712 - DDA3937_RS03470 0.71 +0.1
760,801 + DDA3937_RS03470 0.76 -1.9
760,876 + DDA3937_RS03470 0.81 +0.5
760,877 - DDA3937_RS03470 0.81 -0.1
760,903 + DDA3937_RS03470 0.82 -0.4
760,903 + DDA3937_RS03470 0.82 -2.8
760,904 - DDA3937_RS03470 0.82 -0.1
760,904 - DDA3937_RS03470 0.82 -1.0
760,945 + DDA3937_RS03470 0.85 -0.4
760,945 + DDA3937_RS03470 0.85 +0.0
760,945 + DDA3937_RS03470 0.85 +0.5
760,946 - DDA3937_RS03470 0.85 +0.4
760,946 - DDA3937_RS03470 0.85 +0.5
761,003 - DDA3937_RS03470 0.88 -0.7
761,003 - DDA3937_RS03470 0.88 -0.1
761,005 + DDA3937_RS03470 0.88 +0.3
761,005 + DDA3937_RS03470 0.88 +0.5
761,006 - DDA3937_RS03470 0.88 -0.6
761,006 - DDA3937_RS03470 0.88 -0.3
761,006 - DDA3937_RS03470 0.88 -0.5
761,006 - DDA3937_RS03470 0.88 +0.1
761,025 - DDA3937_RS03470 0.90 -0.1
761,041 + -0.9
761,041 + -0.2
761,042 - -1.1
761,042 - -0.2
761,042 - -0.8
761,050 + -1.1
761,050 + +0.5
761,050 + -0.8
761,050 + -0.2
761,050 + +0.4
761,050 + -0.2
761,050 + +2.5
761,050 + -0.3
761,050 + -1.3
761,050 + -0.5
761,050 + -0.7
761,050 + -0.1
761,051 - -0.2
761,051 - -1.0
761,051 - -0.7
761,051 - -0.6
761,051 - +2.6
761,051 - +0.9
761,051 - +0.8
761,051 - +1.0
761,051 - -0.1
761,152 - -0.5
761,256 + DDA3937_RS03475 0.20 +0.5
761,257 - DDA3937_RS03475 0.20 -1.7
761,257 - DDA3937_RS03475 0.20 +0.2
761,262 + DDA3937_RS03475 0.21 -0.9
761,262 + DDA3937_RS03475 0.21 -0.5
761,262 + DDA3937_RS03475 0.21 -0.4
761,262 + DDA3937_RS03475 0.21 +0.4
761,262 + DDA3937_RS03475 0.21 -1.5
761,262 + DDA3937_RS03475 0.21 -0.3
761,263 - DDA3937_RS03475 0.22 -0.6
761,263 - DDA3937_RS03475 0.22 +2.6
761,263 - DDA3937_RS03475 0.22 -0.6
761,263 - DDA3937_RS03475 0.22 -0.4
761,263 - DDA3937_RS03475 0.22 +1.2
761,263 - DDA3937_RS03475 0.22 -0.3
761,263 - DDA3937_RS03475 0.22 +0.2
761,263 - DDA3937_RS03475 0.22 -0.1
761,263 - DDA3937_RS03475 0.22 -0.7
761,263 - DDA3937_RS03475 0.22 -1.2
761,263 - DDA3937_RS03475 0.22 +1.8
761,263 - DDA3937_RS03475 0.22 +2.4
761,266 + DDA3937_RS03475 0.23 +0.0
761,267 - DDA3937_RS03475 0.23 +0.9
761,287 + DDA3937_RS03475 0.29 -1.5
761,287 + DDA3937_RS03475 0.29 +1.6
761,303 - DDA3937_RS03475 0.35 +0.0
761,462 - DDA3937_RS03475 0.86 +0.2
761,491 - -0.4
761,510 - +1.9
761,525 + +0.4
761,526 - -0.1
761,587 + +0.1
761,587 + +1.4
761,629 + -0.1
761,705 + -0.4
761,861 + DDA3937_RS03480 0.12 +0.5
761,862 - +2.8
761,863 + DDA3937_RS03480 0.12 +1.5
761,863 + DDA3937_RS03480 0.12 +0.5
761,863 + DDA3937_RS03480 0.12 -0.4
761,863 + DDA3937_RS03480 0.12 -0.4
761,905 + DDA3937_RS03480 0.14 -0.3
761,905 + DDA3937_RS03480 0.14 -3.1
761,905 + DDA3937_RS03480 0.14 +0.0
761,905 + DDA3937_RS03480 0.14 +0.2
761,905 + DDA3937_RS03480 0.14 -0.8
761,905 + DDA3937_RS03480 0.14 -1.4
761,905 + DDA3937_RS03480 0.14 -0.7
761,905 + DDA3937_RS03480 0.14 -1.8
761,905 + DDA3937_RS03480 0.14 -1.3
761,905 + DDA3937_RS03480 0.14 -0.7
761,906 - -0.8
761,906 - DDA3937_RS03480 0.14 -1.9
761,906 - DDA3937_RS03480 0.14 -0.0
761,906 - DDA3937_RS03480 0.14 -0.6
761,911 + DDA3937_RS03480 0.14 -0.2
761,912 - DDA3937_RS03480 0.14 -0.4
761,912 - DDA3937_RS03480 0.14 -0.5
761,912 - +3.8
762,061 + DDA3937_RS03480 0.22 +0.6
762,061 + DDA3937_RS03480 0.22 -0.5
762,062 - DDA3937_RS03480 0.22 +2.4
762,062 - DDA3937_RS03480 0.22 -0.4
762,062 - DDA3937_RS03480 0.22 +0.4
762,064 + +0.2
762,064 + DDA3937_RS03480 0.22 -1.0
762,065 - DDA3937_RS03480 0.22 +0.0
762,103 + DDA3937_RS03480 0.24 +0.4
762,103 + DDA3937_RS03480 0.24 +0.6
762,103 + DDA3937_RS03480 0.24 -1.3
762,103 + DDA3937_RS03480 0.24 -0.6
762,103 + DDA3937_RS03480 0.24 -0.6
762,103 + DDA3937_RS03480 0.24 -1.3
762,104 - DDA3937_RS03480 0.24 +0.5
762,104 - DDA3937_RS03480 0.24 +0.2
762,104 - DDA3937_RS03480 0.24 +0.5
762,127 + DDA3937_RS03480 0.25 -0.1
762,127 + DDA3937_RS03480 0.25 -0.2
762,127 + DDA3937_RS03480 0.25 -0.7
762,128 - DDA3937_RS03480 0.25 -0.6
762,397 + DDA3937_RS03480 0.39 +0.3
762,397 + DDA3937_RS03480 0.39 -1.1
762,397 + DDA3937_RS03480 0.39 -0.1
762,397 + DDA3937_RS03480 0.39 -0.6
762,398 - DDA3937_RS03480 0.39 +0.4

Or see this region's nucleotide sequence