Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03255 and DDA3937_RS03260 are separated by 188 nucleotides DDA3937_RS03260 and DDA3937_RS03265 are separated by 69 nucleotides DDA3937_RS03265 and DDA3937_RS03270 are separated by 208 nucleotides
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
DDA3937_RS03260: DDA3937_RS03260 - LysE family translocator, at 714,023 to 714,673
_RS03260
DDA3937_RS03265: DDA3937_RS03265 - HD domain-containing protein, at 714,743 to 715,351
_RS03265
DDA3937_RS03270: DDA3937_RS03270 - hemolysin III family protein, at 715,560 to 716,210
_RS03270
Position (kb) 714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 713.033 kb on + strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.034 kb on - strand, within DDA3937_RS03255 at 713.243 kb on + strand, within DDA3937_RS03255 at 713.265 kb on + strand, within DDA3937_RS03255 at 713.265 kb on + strand, within DDA3937_RS03255 at 713.266 kb on - strand, within DDA3937_RS03255 at 713.266 kb on - strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.331 kb on + strand, within DDA3937_RS03255 at 713.332 kb on - strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.370 kb on + strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.371 kb on - strand, within DDA3937_RS03255 at 713.703 kb on + strand at 713.704 kb on - strand at 713.749 kb on - strand at 713.792 kb on + strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.827 kb on - strand at 713.827 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.833 kb on - strand at 713.845 kb on + strand at 713.846 kb on - strand at 713.846 kb on - strand at 713.857 kb on - strand at 713.857 kb on - strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.952 kb on - strand at 713.952 kb on - strand at 714.027 kb on + strand at 714.040 kb on + strand at 714.041 kb on - strand at 714.041 kb on - strand at 714.053 kb on - strand at 714.106 kb on + strand, within DDA3937_RS03260 at 714.107 kb on - strand, within DDA3937_RS03260 at 714.242 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.278 kb on + strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.280 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.409 kb on - strand at 714.409 kb on - strand, within DDA3937_RS03260 at 714.409 kb on - strand, within DDA3937_RS03260 at 714.610 kb on + strand at 714.610 kb on + strand at 714.610 kb on + strand at 714.611 kb on - strand at 714.631 kb on + strand at 714.631 kb on + strand at 714.632 kb on - strand at 714.745 kb on - strand at 714.792 kb on + strand at 714.793 kb on - strand at 714.814 kb on + strand, within DDA3937_RS03265 at 714.814 kb on + strand, within DDA3937_RS03265 at 714.824 kb on - strand, within DDA3937_RS03265 at 714.859 kb on + strand, within DDA3937_RS03265 at 714.869 kb on + strand, within DDA3937_RS03265 at 714.966 kb on + strand, within DDA3937_RS03265 at 714.967 kb on - strand, within DDA3937_RS03265 at 715.080 kb on + strand, within DDA3937_RS03265 at 715.080 kb on + strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.338 kb on - strand at 715.369 kb on + strand at 715.369 kb on + strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.385 kb on + strand at 715.386 kb on - strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.447 kb on + strand at 715.447 kb on + strand at 715.460 kb on + strand at 715.460 kb on + strand at 715.461 kb on - strand at 715.461 kb on - strand at 715.481 kb on + strand at 715.534 kb on - strand at 715.539 kb on + strand at 715.539 kb on + strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.588 kb on - strand at 715.589 kb on + strand at 715.589 kb on + strand at 715.590 kb on - strand at 715.590 kb on - strand at 715.616 kb on + strand at 715.663 kb on + strand, within DDA3937_RS03270 at 715.663 kb on + strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.666 kb on + strand, within DDA3937_RS03270 at 715.666 kb on + strand, within DDA3937_RS03270
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 713,033 + DDA3937_RS03255 0.72 -0.1 713,034 - DDA3937_RS03255 0.72 +0.5 713,034 - DDA3937_RS03255 0.72 -0.6 713,034 - DDA3937_RS03255 0.72 -0.9 713,243 + DDA3937_RS03255 0.79 +0.6 713,265 + DDA3937_RS03255 0.80 +0.0 713,265 + DDA3937_RS03255 0.80 +0.2 713,266 - DDA3937_RS03255 0.80 +0.7 713,266 - DDA3937_RS03255 0.80 -0.3 713,331 + DDA3937_RS03255 0.82 -0.4 713,331 + DDA3937_RS03255 0.82 -1.0 713,331 + DDA3937_RS03255 0.82 +0.7 713,331 + DDA3937_RS03255 0.82 +0.1 713,332 - DDA3937_RS03255 0.82 -0.0 713,370 + DDA3937_RS03255 0.84 -0.8 713,370 + DDA3937_RS03255 0.84 -0.5 713,370 + DDA3937_RS03255 0.84 -0.0 713,370 + DDA3937_RS03255 0.84 +0.0 713,370 + DDA3937_RS03255 0.84 +0.8 713,370 + DDA3937_RS03255 0.84 -0.4 713,371 - DDA3937_RS03255 0.84 -2.3 713,371 - DDA3937_RS03255 0.84 -0.9 713,371 - DDA3937_RS03255 0.84 -2.1 713,371 - DDA3937_RS03255 0.84 -2.5 713,371 - DDA3937_RS03255 0.84 -0.4 713,371 - DDA3937_RS03255 0.84 -0.5 713,371 - DDA3937_RS03255 0.84 +0.0 713,703 + +0.5 713,704 - -0.1 713,749 - +2.2 713,792 + -1.3 713,793 - +1.0 713,793 - -0.8 713,793 - -0.0 713,827 - -1.1 713,827 - +0.6 713,832 + -1.0 713,832 + -3.0 713,833 - -0.4 713,833 - +0.2 713,845 + -0.4 713,846 - +0.2 713,846 - -2.5 713,857 - +0.9 713,857 - -0.1 713,951 + -2.1 713,951 + -0.7 713,951 + -2.1 713,951 + +0.7 713,951 + -0.4 713,951 + -0.6 713,952 - +0.3 713,952 - -1.9 714,027 + -0.4 714,040 + -0.4 714,041 - -0.1 714,041 - -1.3 714,053 - -1.5 714,106 + DDA3937_RS03260 0.13 -0.6 714,107 - DDA3937_RS03260 0.13 -0.6 714,242 - DDA3937_RS03260 0.34 +1.1 714,270 - DDA3937_RS03260 0.38 +0.0 714,270 - DDA3937_RS03260 0.38 +2.1 714,278 + DDA3937_RS03260 0.39 +0.5 714,279 - DDA3937_RS03260 0.39 -2.0 714,279 - DDA3937_RS03260 0.39 -0.6 714,279 - DDA3937_RS03260 0.39 -3.0 714,279 - DDA3937_RS03260 0.39 -0.7 714,280 + DDA3937_RS03260 0.39 -0.3 714,408 + DDA3937_RS03260 0.59 +3.4 714,408 + DDA3937_RS03260 0.59 -0.2 714,409 - -0.4 714,409 - DDA3937_RS03260 0.59 -0.6 714,409 - DDA3937_RS03260 0.59 +1.4 714,610 + -2.0 714,610 + -0.4 714,610 + -1.0 714,611 - -0.4 714,631 + -1.2 714,631 + -0.6 714,632 - -1.0 714,745 - -0.1 714,792 + -0.2 714,793 - -0.8 714,814 + DDA3937_RS03265 0.12 -0.8 714,814 + DDA3937_RS03265 0.12 +1.2 714,824 - DDA3937_RS03265 0.13 -0.2 714,859 + DDA3937_RS03265 0.19 -0.9 714,869 + DDA3937_RS03265 0.21 +0.1 714,966 + DDA3937_RS03265 0.37 -0.5 714,967 - DDA3937_RS03265 0.37 -1.4 715,080 + DDA3937_RS03265 0.55 -0.8 715,080 + DDA3937_RS03265 0.55 -0.3 715,081 - DDA3937_RS03265 0.56 -0.4 715,081 - DDA3937_RS03265 0.56 +0.3 715,081 - DDA3937_RS03265 0.56 +0.0 715,338 - -0.5 715,369 + -1.1 715,369 + +0.7 715,370 - +0.6 715,370 - +0.4 715,370 - +1.0 715,370 - -0.3 715,385 + -0.2 715,386 - +2.2 715,399 + -0.2 715,399 + -0.6 715,399 + +0.9 715,399 + -1.8 715,447 + -0.1 715,447 + +0.5 715,460 + +1.3 715,460 + -1.6 715,461 - +0.3 715,461 - +0.9 715,481 + +0.0 715,534 - +0.3 715,539 + -1.8 715,539 + +1.2 715,540 - -2.0 715,540 - +3.4 715,540 - +0.3 715,540 - +0.2 715,588 - +0.6 715,589 + -0.5 715,589 + -1.1 715,590 - +0.2 715,590 - +0.8 715,616 + -0.8 715,663 + DDA3937_RS03270 0.16 +0.2 715,663 + DDA3937_RS03270 0.16 -0.9 715,664 - DDA3937_RS03270 0.16 +0.2 715,664 - DDA3937_RS03270 0.16 -0.1 715,664 - DDA3937_RS03270 0.16 -1.5 715,664 - DDA3937_RS03270 0.16 -0.8 715,664 - DDA3937_RS03270 0.16 -0.5 715,666 + DDA3937_RS03270 0.16 -0.5 715,666 + DDA3937_RS03270 0.16 -0.2
Or see this region's nucleotide sequence