Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03230

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03225 and DDA3937_RS03230 are separated by 111 nucleotidesDDA3937_RS03230 and DDA3937_RS03235 are separated by 55 nucleotides DDA3937_RS03225: DDA3937_RS03225 - LysR family transcriptional regulator, at 703,631 to 704,524 _RS03225 DDA3937_RS03230: DDA3937_RS03230 - acetolactate decarboxylase, at 704,636 to 705,424 _RS03230 DDA3937_RS03235: DDA3937_RS03235 - acetolactate synthase AlsS, at 705,480 to 707,159 _RS03235 Position (kb) 704 705 706Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 703.648 kb on - strandat 703.752 kb on + strand, within DDA3937_RS03225at 703.752 kb on + strand, within DDA3937_RS03225at 703.753 kb on - strand, within DDA3937_RS03225at 703.753 kb on - strand, within DDA3937_RS03225at 703.844 kb on - strand, within DDA3937_RS03225at 703.844 kb on - strand, within DDA3937_RS03225at 703.844 kb on - strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.887 kb on + strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 703.888 kb on - strand, within DDA3937_RS03225at 704.043 kb on - strand, within DDA3937_RS03225at 704.043 kb on - strand, within DDA3937_RS03225at 704.084 kb on + strand, within DDA3937_RS03225at 704.084 kb on + strand, within DDA3937_RS03225at 704.101 kb on + strand, within DDA3937_RS03225at 704.133 kb on + strand, within DDA3937_RS03225at 704.133 kb on + strand, within DDA3937_RS03225at 704.133 kb on + strand, within DDA3937_RS03225at 704.134 kb on - strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.137 kb on + strand, within DDA3937_RS03225at 704.138 kb on - strand, within DDA3937_RS03225at 704.138 kb on - strand, within DDA3937_RS03225at 704.138 kb on - strand, within DDA3937_RS03225at 704.138 kb on - strand, within DDA3937_RS03225at 704.138 kb on - strand, within DDA3937_RS03225at 704.138 kb on - strand, within DDA3937_RS03225at 704.173 kb on - strand, within DDA3937_RS03225at 704.315 kb on - strand, within DDA3937_RS03225at 704.331 kb on + strand, within DDA3937_RS03225at 704.332 kb on - strand, within DDA3937_RS03225at 704.516 kb on + strandat 704.516 kb on + strandat 704.516 kb on + strandat 704.516 kb on + strandat 704.516 kb on + strandat 704.517 kb on - strandat 704.517 kb on - strandat 704.524 kb on + strandat 704.525 kb on - strandat 704.527 kb on - strandat 704.557 kb on + strandat 704.653 kb on + strandat 704.653 kb on + strandat 704.654 kb on - strandat 704.728 kb on + strand, within DDA3937_RS03230at 704.728 kb on + strand, within DDA3937_RS03230at 704.728 kb on + strandat 704.729 kb on - strand, within DDA3937_RS03230at 704.761 kb on + strand, within DDA3937_RS03230at 704.779 kb on + strand, within DDA3937_RS03230at 704.779 kb on + strand, within DDA3937_RS03230at 704.779 kb on + strand, within DDA3937_RS03230at 704.779 kb on + strand, within DDA3937_RS03230at 705.037 kb on + strand, within DDA3937_RS03230at 705.037 kb on + strand, within DDA3937_RS03230at 705.037 kb on + strand, within DDA3937_RS03230at 705.037 kb on + strand, within DDA3937_RS03230at 705.038 kb on - strand, within DDA3937_RS03230at 705.060 kb on + strand, within DDA3937_RS03230at 705.061 kb on - strand, within DDA3937_RS03230at 705.061 kb on - strand, within DDA3937_RS03230at 705.061 kb on - strand, within DDA3937_RS03230at 705.074 kb on - strand, within DDA3937_RS03230at 705.097 kb on - strand, within DDA3937_RS03230at 705.097 kb on - strand, within DDA3937_RS03230at 705.116 kb on + strand, within DDA3937_RS03230at 705.116 kb on + strand, within DDA3937_RS03230at 705.117 kb on - strand, within DDA3937_RS03230at 705.117 kb on - strand, within DDA3937_RS03230at 705.118 kb on + strand, within DDA3937_RS03230at 705.119 kb on - strand, within DDA3937_RS03230at 705.119 kb on - strand, within DDA3937_RS03230at 705.119 kb on - strand, within DDA3937_RS03230at 705.197 kb on - strand, within DDA3937_RS03230at 705.206 kb on + strand, within DDA3937_RS03230at 705.206 kb on + strand, within DDA3937_RS03230at 705.206 kb on + strand, within DDA3937_RS03230at 705.206 kb on + strand, within DDA3937_RS03230at 705.206 kb on + strand, within DDA3937_RS03230at 705.206 kb on + strand, within DDA3937_RS03230at 705.207 kb on - strand, within DDA3937_RS03230at 705.207 kb on - strand, within DDA3937_RS03230at 705.207 kb on - strand, within DDA3937_RS03230at 705.207 kb on - strandat 705.207 kb on - strand, within DDA3937_RS03230at 705.234 kb on - strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.277 kb on + strand, within DDA3937_RS03230at 705.278 kb on - strand, within DDA3937_RS03230at 705.278 kb on - strand, within DDA3937_RS03230at 705.278 kb on - strand, within DDA3937_RS03230at 705.278 kb on - strand, within DDA3937_RS03230at 705.278 kb on - strand, within DDA3937_RS03230at 705.278 kb on - strand, within DDA3937_RS03230at 705.287 kb on + strand, within DDA3937_RS03230at 705.306 kb on + strand, within DDA3937_RS03230at 705.306 kb on + strand, within DDA3937_RS03230at 705.306 kb on + strand, within DDA3937_RS03230at 705.307 kb on - strand, within DDA3937_RS03230at 705.307 kb on - strand, within DDA3937_RS03230at 705.307 kb on - strand, within DDA3937_RS03230at 705.307 kb on - strand, within DDA3937_RS03230at 705.378 kb on + strandat 705.379 kb on - strandat 705.438 kb on + strandat 705.461 kb on + strandat 705.461 kb on + strandat 705.462 kb on - strandat 705.472 kb on + strandat 705.488 kb on + strandat 705.488 kb on + strandat 705.488 kb on + strandat 705.489 kb on - strandat 705.513 kb on - strandat 705.532 kb on + strandat 705.532 kb on + strandat 705.561 kb on + strandat 705.561 kb on + strandat 705.561 kb on + strandat 705.561 kb on + strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.562 kb on - strandat 705.590 kb on - strandat 705.665 kb on + strand, within DDA3937_RS03235at 705.665 kb on + strand, within DDA3937_RS03235at 705.880 kb on - strand, within DDA3937_RS03235at 705.880 kb on - strand, within DDA3937_RS03235at 705.880 kb on - strand, within DDA3937_RS03235at 705.989 kb on + strand, within DDA3937_RS03235at 706.091 kb on - strand, within DDA3937_RS03235at 706.199 kb on + strand, within DDA3937_RS03235at 706.199 kb on + strand, within DDA3937_RS03235at 706.199 kb on + strand, within DDA3937_RS03235at 706.200 kb on - strand, within DDA3937_RS03235at 706.203 kb on + strand, within DDA3937_RS03235at 706.203 kb on + strand, within DDA3937_RS03235at 706.203 kb on + strand, within DDA3937_RS03235at 706.204 kb on - strand, within DDA3937_RS03235at 706.294 kb on + strand, within DDA3937_RS03235at 706.294 kb on + strand, within DDA3937_RS03235at 706.294 kb on + strand, within DDA3937_RS03235at 706.294 kb on + strand, within DDA3937_RS03235at 706.295 kb on - strand, within DDA3937_RS03235at 706.295 kb on - strand, within DDA3937_RS03235at 706.295 kb on - strand, within DDA3937_RS03235at 706.311 kb on - strand, within DDA3937_RS03235at 706.341 kb on + strand, within DDA3937_RS03235at 706.341 kb on + strand, within DDA3937_RS03235at 706.385 kb on + strand, within DDA3937_RS03235at 706.385 kb on + strand, within DDA3937_RS03235at 706.385 kb on + strand, within DDA3937_RS03235at 706.386 kb on - strand, within DDA3937_RS03235

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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703,648 - -0.3
703,752 + DDA3937_RS03225 0.14 +0.2
703,752 + DDA3937_RS03225 0.14 +0.6
703,753 - DDA3937_RS03225 0.14 +0.7
703,753 - DDA3937_RS03225 0.14 +0.4
703,844 - DDA3937_RS03225 0.24 -0.6
703,844 - DDA3937_RS03225 0.24 -0.5
703,844 - DDA3937_RS03225 0.24 +0.6
703,887 + DDA3937_RS03225 0.29 +0.3
703,887 + DDA3937_RS03225 0.29 +0.9
703,887 + DDA3937_RS03225 0.29 -0.8
703,887 + DDA3937_RS03225 0.29 -0.2
703,887 + DDA3937_RS03225 0.29 +1.8
703,887 + DDA3937_RS03225 0.29 -0.4
703,887 + DDA3937_RS03225 0.29 +1.4
703,887 + DDA3937_RS03225 0.29 +1.6
703,888 - DDA3937_RS03225 0.29 +0.7
703,888 - DDA3937_RS03225 0.29 +1.4
703,888 - DDA3937_RS03225 0.29 +1.4
703,888 - DDA3937_RS03225 0.29 +0.2
703,888 - DDA3937_RS03225 0.29 -0.4
703,888 - DDA3937_RS03225 0.29 -0.1
704,043 - DDA3937_RS03225 0.46 +0.7
704,043 - DDA3937_RS03225 0.46 -0.2
704,084 + DDA3937_RS03225 0.51 +1.9
704,084 + DDA3937_RS03225 0.51 -1.1
704,101 + DDA3937_RS03225 0.53 -0.4
704,133 + DDA3937_RS03225 0.56 -1.5
704,133 + DDA3937_RS03225 0.56 +2.5
704,133 + DDA3937_RS03225 0.56 +1.7
704,134 - DDA3937_RS03225 0.56 +0.1
704,137 + DDA3937_RS03225 0.57 -2.3
704,137 + DDA3937_RS03225 0.57 -1.3
704,137 + DDA3937_RS03225 0.57 +0.1
704,137 + DDA3937_RS03225 0.57 -0.6
704,137 + DDA3937_RS03225 0.57 -0.8
704,137 + DDA3937_RS03225 0.57 +1.4
704,137 + DDA3937_RS03225 0.57 +0.5
704,137 + DDA3937_RS03225 0.57 +1.0
704,137 + DDA3937_RS03225 0.57 +0.4
704,138 - DDA3937_RS03225 0.57 -0.6
704,138 - DDA3937_RS03225 0.57 +0.1
704,138 - DDA3937_RS03225 0.57 +1.0
704,138 - DDA3937_RS03225 0.57 +0.1
704,138 - DDA3937_RS03225 0.57 -2.5
704,138 - DDA3937_RS03225 0.57 +0.7
704,173 - DDA3937_RS03225 0.61 -0.1
704,315 - DDA3937_RS03225 0.77 -0.4
704,331 + DDA3937_RS03225 0.78 +0.7
704,332 - DDA3937_RS03225 0.78 -0.3
704,516 + +0.2
704,516 + +0.8
704,516 + -1.1
704,516 + +0.2
704,516 + +1.1
704,517 - -1.2
704,517 - +0.5
704,524 + -1.4
704,525 - -1.6
704,527 - +1.2
704,557 + -0.8
704,653 + -0.8
704,653 + +0.5
704,654 - -0.6
704,728 + DDA3937_RS03230 0.12 -1.6
704,728 + DDA3937_RS03230 0.12 -0.4
704,728 + -0.8
704,729 - DDA3937_RS03230 0.12 -1.9
704,761 + DDA3937_RS03230 0.16 -0.2
704,779 + DDA3937_RS03230 0.18 -0.9
704,779 + DDA3937_RS03230 0.18 -0.4
704,779 + DDA3937_RS03230 0.18 +0.3
704,779 + DDA3937_RS03230 0.18 -0.4
705,037 + DDA3937_RS03230 0.51 -0.2
705,037 + DDA3937_RS03230 0.51 +4.7
705,037 + DDA3937_RS03230 0.51 -0.4
705,037 + DDA3937_RS03230 0.51 +0.8
705,038 - DDA3937_RS03230 0.51 -0.5
705,060 + DDA3937_RS03230 0.54 -1.0
705,061 - DDA3937_RS03230 0.54 +0.5
705,061 - DDA3937_RS03230 0.54 +1.0
705,061 - DDA3937_RS03230 0.54 -1.0
705,074 - DDA3937_RS03230 0.56 +0.7
705,097 - DDA3937_RS03230 0.58 +0.3
705,097 - DDA3937_RS03230 0.58 +0.5
705,116 + DDA3937_RS03230 0.61 -1.5
705,116 + DDA3937_RS03230 0.61 -1.3
705,117 - DDA3937_RS03230 0.61 +0.1
705,117 - DDA3937_RS03230 0.61 +0.6
705,118 + DDA3937_RS03230 0.61 +0.1
705,119 - DDA3937_RS03230 0.61 -0.9
705,119 - DDA3937_RS03230 0.61 +0.3
705,119 - DDA3937_RS03230 0.61 +0.2
705,197 - DDA3937_RS03230 0.71 -0.6
705,206 + DDA3937_RS03230 0.72 +0.1
705,206 + DDA3937_RS03230 0.72 -0.7
705,206 + DDA3937_RS03230 0.72 +0.4
705,206 + DDA3937_RS03230 0.72 -0.4
705,206 + DDA3937_RS03230 0.72 +0.9
705,206 + DDA3937_RS03230 0.72 -0.4
705,207 - DDA3937_RS03230 0.72 +0.4
705,207 - DDA3937_RS03230 0.72 -0.2
705,207 - DDA3937_RS03230 0.72 -0.2
705,207 - +2.2
705,207 - DDA3937_RS03230 0.72 +1.2
705,234 - DDA3937_RS03230 0.76 +2.8
705,277 + DDA3937_RS03230 0.81 +0.7
705,277 + DDA3937_RS03230 0.81 -1.6
705,277 + DDA3937_RS03230 0.81 -0.1
705,277 + DDA3937_RS03230 0.81 -0.5
705,277 + DDA3937_RS03230 0.81 +0.2
705,277 + DDA3937_RS03230 0.81 +0.2
705,277 + DDA3937_RS03230 0.81 -2.1
705,278 - DDA3937_RS03230 0.81 +2.6
705,278 - DDA3937_RS03230 0.81 -0.8
705,278 - DDA3937_RS03230 0.81 -0.3
705,278 - DDA3937_RS03230 0.81 -1.4
705,278 - DDA3937_RS03230 0.81 +0.2
705,278 - DDA3937_RS03230 0.81 +1.5
705,287 + DDA3937_RS03230 0.83 -2.5
705,306 + DDA3937_RS03230 0.85 +0.4
705,306 + DDA3937_RS03230 0.85 +1.2
705,306 + DDA3937_RS03230 0.85 +1.0
705,307 - DDA3937_RS03230 0.85 -0.6
705,307 - DDA3937_RS03230 0.85 +0.0
705,307 - DDA3937_RS03230 0.85 +0.5
705,307 - DDA3937_RS03230 0.85 +0.5
705,378 + -0.1
705,379 - -0.9
705,438 + -1.6
705,461 + -0.6
705,461 + -0.2
705,462 - -0.4
705,472 + -0.1
705,488 + +1.4
705,488 + +0.1
705,488 + +0.2
705,489 - +0.5
705,513 - +0.6
705,532 + -0.1
705,532 + +0.8
705,561 + +1.2
705,561 + -1.1
705,561 + -0.1
705,561 + +0.5
705,562 - +0.1
705,562 - +0.5
705,562 - -0.8
705,562 - +0.3
705,562 - +0.4
705,562 - -0.6
705,562 - -0.0
705,562 - +0.7
705,562 - +1.0
705,590 - -0.4
705,665 + DDA3937_RS03235 0.11 +0.7
705,665 + DDA3937_RS03235 0.11 -0.1
705,880 - DDA3937_RS03235 0.24 -0.1
705,880 - DDA3937_RS03235 0.24 -0.1
705,880 - DDA3937_RS03235 0.24 +2.2
705,989 + DDA3937_RS03235 0.30 -0.1
706,091 - DDA3937_RS03235 0.36 -0.1
706,199 + DDA3937_RS03235 0.43 -0.4
706,199 + DDA3937_RS03235 0.43 -0.4
706,199 + DDA3937_RS03235 0.43 -0.4
706,200 - DDA3937_RS03235 0.43 -1.1
706,203 + DDA3937_RS03235 0.43 -0.1
706,203 + DDA3937_RS03235 0.43 +0.5
706,203 + DDA3937_RS03235 0.43 +0.1
706,204 - DDA3937_RS03235 0.43 +2.2
706,294 + DDA3937_RS03235 0.48 +0.3
706,294 + DDA3937_RS03235 0.48 -1.3
706,294 + DDA3937_RS03235 0.48 +0.7
706,294 + DDA3937_RS03235 0.48 -0.6
706,295 - DDA3937_RS03235 0.49 +0.5
706,295 - DDA3937_RS03235 0.49 -0.3
706,295 - DDA3937_RS03235 0.49 +0.2
706,311 - DDA3937_RS03235 0.49 -0.1
706,341 + DDA3937_RS03235 0.51 +0.5
706,341 + DDA3937_RS03235 0.51 +0.1
706,385 + DDA3937_RS03235 0.54 -0.6
706,385 + DDA3937_RS03235 0.54 -0.0
706,385 + DDA3937_RS03235 0.54 +1.8
706,386 - DDA3937_RS03235 0.54 +0.1

Or see this region's nucleotide sequence