Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03080 and DDA3937_RS03085 are separated by 107 nucleotides DDA3937_RS03085 and DDA3937_RS03090 are separated by 251 nucleotides DDA3937_RS03090 and DDA3937_RS03095 are separated by 127 nucleotides
DDA3937_RS03080: DDA3937_RS03080 - tRNA pseudouridine(55) synthase TruB, at 678,919 to 679,875
_RS03080
DDA3937_RS03085: DDA3937_RS03085 - 30S ribosomal protein S15, at 679,983 to 680,252
_RS03085
DDA3937_RS03090: DDA3937_RS03090 - polyribonucleotide nucleotidyltransferase, at 680,504 to 682,624
_RS03090
DDA3937_RS03095: DDA3937_RS03095 - lipoprotein NlpI, at 682,752 to 683,636
_RS03095
Position (kb) 680
681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 679.513 kb on + strand, within DDA3937_RS03080 at 679.513 kb on + strand, within DDA3937_RS03080 at 679.514 kb on - strand, within DDA3937_RS03080 at 679.540 kb on + strand, within DDA3937_RS03080 at 679.574 kb on + strand, within DDA3937_RS03080 at 679.574 kb on + strand, within DDA3937_RS03080 at 679.574 kb on + strand, within DDA3937_RS03080 at 679.574 kb on + strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.575 kb on - strand, within DDA3937_RS03080 at 679.705 kb on + strand, within DDA3937_RS03080 at 679.706 kb on - strand, within DDA3937_RS03080 at 679.760 kb on + strand, within DDA3937_RS03080 at 679.760 kb on + strand, within DDA3937_RS03080 at 679.761 kb on - strand, within DDA3937_RS03080 at 679.761 kb on - strand, within DDA3937_RS03080 at 679.853 kb on - strand at 679.853 kb on - strand at 680.215 kb on - strand, within DDA3937_RS03085 at 680.299 kb on + strand at 680.322 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.327 kb on + strand at 680.328 kb on - strand at 680.328 kb on - strand at 680.328 kb on - strand at 680.342 kb on + strand at 680.342 kb on + strand at 680.355 kb on + strand at 680.356 kb on - strand at 680.356 kb on - strand at 680.415 kb on + strand at 680.429 kb on + strand at 680.430 kb on - strand at 680.430 kb on - strand at 680.445 kb on + strand at 680.445 kb on + strand at 680.445 kb on + strand at 680.448 kb on + strand at 680.448 kb on + strand at 680.463 kb on - strand at 680.489 kb on + strand at 680.545 kb on + strand at 680.546 kb on - strand at 680.690 kb on + strand at 680.691 kb on - strand at 680.691 kb on - strand at 680.691 kb on - strand at 680.702 kb on - strand at 680.706 kb on - strand at 680.706 kb on - strand at 680.970 kb on - strand, within DDA3937_RS03090 at 680.984 kb on + strand, within DDA3937_RS03090 at 680.985 kb on - strand, within DDA3937_RS03090 at 681.317 kb on - strand, within DDA3937_RS03090 at 681.595 kb on + strand, within DDA3937_RS03090 at 681.777 kb on + strand, within DDA3937_RS03090 at 681.778 kb on - strand, within DDA3937_RS03090 at 681.786 kb on + strand, within DDA3937_RS03090 at 681.787 kb on - strand, within DDA3937_RS03090 at 682.214 kb on - strand, within DDA3937_RS03090 at 682.322 kb on + strand, within DDA3937_RS03090 at 682.322 kb on + strand at 682.322 kb on + strand, within DDA3937_RS03090 at 682.323 kb on - strand, within DDA3937_RS03090 at 682.323 kb on - strand, within DDA3937_RS03090 at 682.323 kb on - strand, within DDA3937_RS03090 at 682.373 kb on - strand, within DDA3937_RS03090 at 682.453 kb on + strand at 682.454 kb on - strand at 682.454 kb on - strand at 682.454 kb on - strand at 682.497 kb on - strand at 682.518 kb on + strand at 682.530 kb on + strand at 682.570 kb on - strand at 682.622 kb on + strand at 682.622 kb on + strand at 682.622 kb on + strand at 682.623 kb on - strand at 682.623 kb on - strand at 682.625 kb on + strand at 682.625 kb on + strand at 682.651 kb on + strand at 682.652 kb on - strand at 682.652 kb on - strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.674 kb on - strand at 682.674 kb on - strand at 682.676 kb on + strand at 682.676 kb on + strand at 682.676 kb on + strand at 682.676 kb on + strand at 682.677 kb on - strand at 682.677 kb on - strand at 682.677 kb on - strand at 682.678 kb on + strand at 682.678 kb on + strand at 682.678 kb on + strand at 682.678 kb on + strand at 682.679 kb on - strand at 682.695 kb on + strand at 682.695 kb on + strand at 682.695 kb on + strand at 682.696 kb on - strand at 682.696 kb on - strand at 682.696 kb on - strand at 682.776 kb on + strand at 682.777 kb on - strand at 682.777 kb on - strand at 682.777 kb on - strand at 682.777 kb on - strand at 682.793 kb on + strand at 682.793 kb on + strand at 682.794 kb on - strand at 682.794 kb on - strand at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.948 kb on - strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 683.052 kb on + strand, within DDA3937_RS03095 at 683.064 kb on + strand, within DDA3937_RS03095 at 683.065 kb on - strand, within DDA3937_RS03095 at 683.098 kb on - strand at 683.116 kb on + strand, within DDA3937_RS03095 at 683.119 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.137 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.175 kb on + strand, within DDA3937_RS03095 at 683.213 kb on - strand, within DDA3937_RS03095 at 683.319 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.421 kb on - strand at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.481 kb on + strand, within DDA3937_RS03095 at 683.482 kb on - strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.593 kb on + strand at 683.593 kb on + strand at 683.593 kb on + strand at 683.614 kb on + strand at 683.614 kb on + strand at 683.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 679,513 + DDA3937_RS03080 0.62 -0.0 679,513 + DDA3937_RS03080 0.62 +0.3 679,514 - DDA3937_RS03080 0.62 -0.8 679,540 + DDA3937_RS03080 0.65 -1.0 679,574 + DDA3937_RS03080 0.68 -0.8 679,574 + DDA3937_RS03080 0.68 +1.6 679,574 + DDA3937_RS03080 0.68 +0.2 679,574 + DDA3937_RS03080 0.68 -0.6 679,575 - DDA3937_RS03080 0.69 -0.4 679,575 - DDA3937_RS03080 0.69 +0.3 679,575 - DDA3937_RS03080 0.69 -0.5 679,575 - DDA3937_RS03080 0.69 -0.8 679,575 - DDA3937_RS03080 0.69 -0.3 679,575 - DDA3937_RS03080 0.69 -1.2 679,575 - DDA3937_RS03080 0.69 -1.4 679,705 + DDA3937_RS03080 0.82 +0.5 679,706 - DDA3937_RS03080 0.82 -1.2 679,760 + DDA3937_RS03080 0.88 +0.2 679,760 + DDA3937_RS03080 0.88 -1.2 679,761 - DDA3937_RS03080 0.88 +0.1 679,761 - DDA3937_RS03080 0.88 -1.1 679,853 - -1.6 679,853 - +1.8 680,215 - DDA3937_RS03085 0.86 -1.1 680,299 + +0.2 680,322 + -1.0 680,327 + -2.2 680,327 + +0.0 680,327 + -0.4 680,327 + -0.2 680,327 + +0.6 680,327 + -1.2 680,327 + +0.7 680,327 + -1.8 680,328 - -1.1 680,328 - +2.2 680,328 - +0.0 680,342 + -1.2 680,342 + +1.8 680,355 + -1.8 680,356 - +1.2 680,356 - -2.5 680,415 + +1.2 680,429 + -0.9 680,430 - -1.6 680,430 - -1.1 680,445 + -0.0 680,445 + -0.5 680,445 + -0.9 680,448 + +1.4 680,448 + +0.6 680,463 - -2.1 680,489 + -1.4 680,545 + -0.8 680,546 - +0.8 680,690 + -0.4 680,691 - +0.6 680,691 - -0.4 680,691 - -0.8 680,702 - -1.9 680,706 - -1.1 680,706 - -1.1 680,970 - DDA3937_RS03090 0.22 -0.5 680,984 + DDA3937_RS03090 0.23 +0.4 680,985 - DDA3937_RS03090 0.23 -1.5 681,317 - DDA3937_RS03090 0.38 -0.6 681,595 + DDA3937_RS03090 0.51 -1.8 681,777 + DDA3937_RS03090 0.60 -1.1 681,778 - DDA3937_RS03090 0.60 +0.4 681,786 + DDA3937_RS03090 0.60 -0.4 681,787 - DDA3937_RS03090 0.60 -2.0 682,214 - DDA3937_RS03090 0.81 -0.8 682,322 + DDA3937_RS03090 0.86 -1.1 682,322 + -0.8 682,322 + DDA3937_RS03090 0.86 -0.0 682,323 - DDA3937_RS03090 0.86 +0.1 682,323 - DDA3937_RS03090 0.86 -2.4 682,323 - DDA3937_RS03090 0.86 -0.1 682,373 - DDA3937_RS03090 0.88 -0.8 682,453 + +2.2 682,454 - +0.5 682,454 - +0.2 682,454 - -2.0 682,497 - +0.9 682,518 + -1.6 682,530 + -0.5 682,570 - -1.1 682,622 + +0.1 682,622 + -1.5 682,622 + +1.7 682,623 - -0.1 682,623 - -0.7 682,625 + +1.2 682,625 + +0.7 682,651 + +3.0 682,652 - -1.4 682,652 - -1.0 682,673 + +0.6 682,673 + -1.0 682,673 + +0.6 682,673 + +0.3 682,673 + +0.5 682,674 - +0.7 682,674 - -0.0 682,676 + -0.3 682,676 + -0.1 682,676 + +0.5 682,676 + -1.2 682,677 - +0.5 682,677 - +0.8 682,677 - +1.3 682,678 + +1.0 682,678 + -0.9 682,678 + +1.6 682,678 + +0.5 682,679 - -1.0 682,695 + -0.9 682,695 + +0.0 682,695 + -1.8 682,696 - +0.7 682,696 - -0.4 682,696 - +0.6 682,776 + +1.3 682,777 - +0.1 682,777 - -0.2 682,777 - -0.8 682,777 - +1.6 682,793 + -1.2 682,793 + +0.3 682,794 - +0.0 682,794 - +0.7 682,945 + DDA3937_RS03095 0.22 +2.0 682,945 + DDA3937_RS03095 0.22 +1.4 682,945 + DDA3937_RS03095 0.22 +3.3 682,946 - DDA3937_RS03095 0.22 +1.3 682,946 - DDA3937_RS03095 0.22 +3.0 682,947 + DDA3937_RS03095 0.22 +0.9 682,947 + DDA3937_RS03095 0.22 +0.2 682,948 - DDA3937_RS03095 0.22 -1.8 682,965 + DDA3937_RS03095 0.24 -1.6 682,965 + DDA3937_RS03095 0.24 +6.1 682,965 + DDA3937_RS03095 0.24 -2.0 682,965 + DDA3937_RS03095 0.24 -1.0 682,965 + DDA3937_RS03095 0.24 +0.5 682,966 - DDA3937_RS03095 0.24 -1.3 682,966 - DDA3937_RS03095 0.24 +6.9 683,052 + DDA3937_RS03095 0.34 -0.9 683,064 + DDA3937_RS03095 0.35 +2.8 683,065 - DDA3937_RS03095 0.35 +1.8 683,098 - +0.6 683,116 + DDA3937_RS03095 0.41 -1.1 683,119 + DDA3937_RS03095 0.41 +0.0 683,136 + DDA3937_RS03095 0.43 -0.6 683,136 + DDA3937_RS03095 0.43 +3.9 683,137 - DDA3937_RS03095 0.44 +0.8 683,173 - DDA3937_RS03095 0.48 -0.4 683,173 - DDA3937_RS03095 0.48 -0.1 683,175 + DDA3937_RS03095 0.48 +1.8 683,213 - DDA3937_RS03095 0.52 -2.0 683,319 + DDA3937_RS03095 0.64 +0.3 683,420 + DDA3937_RS03095 0.75 +0.8 683,420 + DDA3937_RS03095 0.75 -1.2 683,420 + DDA3937_RS03095 0.75 -0.0 683,420 + DDA3937_RS03095 0.75 +3.3 683,421 - +0.8 683,466 + DDA3937_RS03095 0.81 -3.1 683,466 + DDA3937_RS03095 0.81 +0.1 683,466 + DDA3937_RS03095 0.81 +2.4 683,466 + DDA3937_RS03095 0.81 +1.3 683,467 - DDA3937_RS03095 0.81 -1.4 683,467 - DDA3937_RS03095 0.81 -0.1 683,467 - DDA3937_RS03095 0.81 +0.2 683,470 + DDA3937_RS03095 0.81 +1.3 683,470 + DDA3937_RS03095 0.81 +0.3 683,474 + DDA3937_RS03095 0.82 +1.2 683,474 + DDA3937_RS03095 0.82 -1.0 683,481 + DDA3937_RS03095 0.82 +1.8 683,482 - DDA3937_RS03095 0.82 -1.6 683,485 + DDA3937_RS03095 0.83 -0.6 683,485 + DDA3937_RS03095 0.83 -0.2 683,485 + DDA3937_RS03095 0.83 +0.4 683,485 + DDA3937_RS03095 0.83 +0.3 683,485 + DDA3937_RS03095 0.83 -1.4 683,486 - DDA3937_RS03095 0.83 -1.9 683,486 - DDA3937_RS03095 0.83 -0.8 683,486 - DDA3937_RS03095 0.83 +1.2 683,486 - DDA3937_RS03095 0.83 -1.1 683,486 - DDA3937_RS03095 0.83 -3.1 683,486 - DDA3937_RS03095 0.83 -0.6 683,486 - DDA3937_RS03095 0.83 -0.5 683,593 + -1.8 683,593 + +0.9 683,593 + -0.4 683,614 + -0.2 683,614 + -0.2 683,615 - +0.6
Or see this region's nucleotide sequence