Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02825 and DDA3937_RS02830 are separated by 294 nucleotides DDA3937_RS02830 and DDA3937_RS02835 are separated by 18 nucleotides
DDA3937_RS02825: DDA3937_RS02825 - glucuronate isomerase, at 621,865 to 623,283
_RS02825
DDA3937_RS02830: DDA3937_RS02830 - tagaturonate reductase, at 623,578 to 625,029
_RS02830
DDA3937_RS02835: DDA3937_RS02835 - altronate dehydratase, at 625,048 to 626,538
_RS02835
Position (kb) 623
624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.750 kb on + strand, within DDA3937_RS02825 at 622.750 kb on + strand, within DDA3937_RS02825 at 622.751 kb on - strand, within DDA3937_RS02825 at 622.776 kb on + strand, within DDA3937_RS02825 at 622.777 kb on - strand, within DDA3937_RS02825 at 622.777 kb on - strand, within DDA3937_RS02825 at 622.909 kb on + strand, within DDA3937_RS02825 at 622.910 kb on - strand, within DDA3937_RS02825 at 623.119 kb on + strand, within DDA3937_RS02825 at 623.120 kb on - strand, within DDA3937_RS02825 at 623.120 kb on - strand, within DDA3937_RS02825 at 623.134 kb on + strand, within DDA3937_RS02825 at 623.134 kb on + strand, within DDA3937_RS02825 at 623.134 kb on + strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.135 kb on - strand, within DDA3937_RS02825 at 623.230 kb on - strand at 623.270 kb on + strand at 623.271 kb on - strand at 623.272 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.328 kb on + strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.329 kb on - strand at 623.336 kb on + strand at 623.336 kb on + strand at 623.336 kb on + strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.337 kb on - strand at 623.353 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.368 kb on + strand at 623.369 kb on - strand at 623.384 kb on + strand at 623.384 kb on + strand at 623.385 kb on - strand at 623.393 kb on + strand at 623.393 kb on + strand at 623.393 kb on + strand at 623.394 kb on - strand at 623.394 kb on - strand at 623.394 kb on - strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.395 kb on + strand at 623.396 kb on - strand at 623.396 kb on - strand at 623.397 kb on + strand at 623.397 kb on + strand at 623.397 kb on + strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.398 kb on - strand at 623.512 kb on + strand at 623.512 kb on + strand at 623.512 kb on + strand at 623.512 kb on + strand at 623.513 kb on - strand at 623.568 kb on + strand at 623.568 kb on + strand at 623.568 kb on + strand at 623.569 kb on - strand at 623.569 kb on - strand at 623.576 kb on + strand at 623.576 kb on + strand at 623.667 kb on + strand at 623.667 kb on + strand at 623.701 kb on - strand at 623.723 kb on + strand at 623.724 kb on - strand, within DDA3937_RS02830 at 623.782 kb on + strand, within DDA3937_RS02830 at 623.782 kb on + strand, within DDA3937_RS02830 at 623.782 kb on + strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.783 kb on - strand, within DDA3937_RS02830 at 623.794 kb on - strand, within DDA3937_RS02830 at 623.872 kb on + strand, within DDA3937_RS02830 at 623.873 kb on - strand, within DDA3937_RS02830 at 623.890 kb on + strand, within DDA3937_RS02830 at 623.890 kb on + strand, within DDA3937_RS02830 at 623.890 kb on + strand, within DDA3937_RS02830 at 623.891 kb on - strand, within DDA3937_RS02830 at 623.891 kb on - strand, within DDA3937_RS02830 at 623.891 kb on - strand, within DDA3937_RS02830 at 623.959 kb on + strand, within DDA3937_RS02830 at 623.959 kb on + strand, within DDA3937_RS02830 at 623.959 kb on + strand, within DDA3937_RS02830 at 623.960 kb on - strand, within DDA3937_RS02830 at 623.960 kb on - strand, within DDA3937_RS02830 at 624.049 kb on - strand, within DDA3937_RS02830 at 624.100 kb on + strand, within DDA3937_RS02830 at 624.100 kb on + strand, within DDA3937_RS02830 at 624.101 kb on - strand, within DDA3937_RS02830 at 624.101 kb on - strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.192 kb on + strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.193 kb on - strand, within DDA3937_RS02830 at 624.305 kb on - strand, within DDA3937_RS02830 at 624.305 kb on - strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.310 kb on + strand, within DDA3937_RS02830 at 624.311 kb on - strand, within DDA3937_RS02830 at 624.399 kb on + strand, within DDA3937_RS02830 at 624.399 kb on + strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.400 kb on - strand, within DDA3937_RS02830 at 624.406 kb on + strand, within DDA3937_RS02830 at 624.406 kb on + strand, within DDA3937_RS02830 at 624.444 kb on + strand, within DDA3937_RS02830 at 624.554 kb on + strand, within DDA3937_RS02830 at 624.709 kb on + strand, within DDA3937_RS02830 at 624.709 kb on + strand, within DDA3937_RS02830 at 624.776 kb on - strand, within DDA3937_RS02830 at 624.776 kb on - strand, within DDA3937_RS02830 at 624.891 kb on - strand at 624.985 kb on - strand at 624.985 kb on - strand at 624.985 kb on - strand at 625.022 kb on - strand at 625.027 kb on + strand at 625.044 kb on - strand at 625.176 kb on + strand at 625.177 kb on - strand at 625.177 kb on - strand at 625.177 kb on - strand at 625.222 kb on + strand, within DDA3937_RS02835 at 625.222 kb on + strand, within DDA3937_RS02835 at 625.222 kb on + strand, within DDA3937_RS02835 at 625.222 kb on + strand, within DDA3937_RS02835 at 625.291 kb on - strand at 625.318 kb on + strand, within DDA3937_RS02835 at 625.319 kb on - strand, within DDA3937_RS02835 at 625.324 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.381 kb on + strand, within DDA3937_RS02835 at 625.382 kb on - strand, within DDA3937_RS02835 at 625.382 kb on - strand, within DDA3937_RS02835 at 625.523 kb on - strand, within DDA3937_RS02835 at 625.774 kb on + strand, within DDA3937_RS02835 at 625.775 kb on - strand, within DDA3937_RS02835 at 625.775 kb on - strand, within DDA3937_RS02835 at 625.903 kb on + strand, within DDA3937_RS02835 at 625.903 kb on + strand at 625.904 kb on - strand, within DDA3937_RS02835 at 625.904 kb on - strand, within DDA3937_RS02835 at 625.904 kb on - strand, within DDA3937_RS02835 at 626.019 kb on + strand, within DDA3937_RS02835 at 626.020 kb on - strand, within DDA3937_RS02835 at 626.020 kb on - strand, within DDA3937_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 622,750 + DDA3937_RS02825 0.62 -1.4 622,750 + DDA3937_RS02825 0.62 -0.5 622,751 - DDA3937_RS02825 0.62 -2.3 622,776 + DDA3937_RS02825 0.64 +0.0 622,777 - DDA3937_RS02825 0.64 +0.4 622,777 - DDA3937_RS02825 0.64 -0.1 622,909 + DDA3937_RS02825 0.74 -1.7 622,910 - DDA3937_RS02825 0.74 -2.1 623,119 + DDA3937_RS02825 0.88 +1.2 623,120 - DDA3937_RS02825 0.88 -1.5 623,120 - DDA3937_RS02825 0.88 -1.9 623,134 + DDA3937_RS02825 0.89 -0.2 623,134 + DDA3937_RS02825 0.89 -0.1 623,134 + DDA3937_RS02825 0.89 +2.2 623,135 - DDA3937_RS02825 0.89 -0.4 623,135 - DDA3937_RS02825 0.89 +0.3 623,135 - DDA3937_RS02825 0.89 -2.2 623,135 - DDA3937_RS02825 0.89 +0.0 623,230 - -0.8 623,270 + -1.2 623,271 - -0.5 623,272 + -1.6 623,328 + +1.9 623,328 + +2.4 623,328 + -0.7 623,328 + -0.5 623,328 + +1.6 623,329 - -0.7 623,329 - -0.0 623,329 - -1.1 623,329 - +0.2 623,329 - -0.6 623,329 - -0.5 623,329 - -1.1 623,329 - -0.7 623,329 - -3.2 623,329 - -1.7 623,329 - -1.2 623,336 + -0.5 623,336 + -0.4 623,336 + -1.0 623,337 - -0.5 623,337 - -0.1 623,337 - -0.6 623,337 - +0.5 623,337 - -2.1 623,353 + -0.1 623,368 + -1.6 623,368 + -0.4 623,368 + -1.1 623,368 + -0.2 623,368 + -0.4 623,368 + +0.0 623,368 + +0.4 623,369 - -0.2 623,384 + +0.3 623,384 + -1.0 623,385 - +0.9 623,393 + -1.4 623,393 + -0.1 623,393 + +1.6 623,394 - -0.8 623,394 - +1.1 623,394 - -1.8 623,395 + -0.9 623,395 + +0.3 623,395 + -0.7 623,395 + +0.2 623,395 + -0.8 623,396 - -0.5 623,396 - -1.1 623,397 + -0.2 623,397 + +2.1 623,397 + -0.1 623,398 - -0.4 623,398 - +0.2 623,398 - -1.3 623,512 + +0.6 623,512 + -0.8 623,512 + -1.4 623,512 + -0.1 623,513 - -1.7 623,568 + -1.2 623,568 + -3.1 623,568 + -0.0 623,569 - -1.8 623,569 - -0.8 623,576 + -0.9 623,576 + -1.4 623,667 + +0.1 623,667 + +0.1 623,701 - -1.0 623,723 + +1.2 623,724 - DDA3937_RS02830 0.10 +0.2 623,782 + DDA3937_RS02830 0.14 +0.5 623,782 + DDA3937_RS02830 0.14 -0.5 623,782 + DDA3937_RS02830 0.14 -1.3 623,783 - DDA3937_RS02830 0.14 -1.2 623,783 - DDA3937_RS02830 0.14 -0.3 623,783 - DDA3937_RS02830 0.14 -0.3 623,783 - DDA3937_RS02830 0.14 -3.5 623,783 - DDA3937_RS02830 0.14 -3.6 623,783 - DDA3937_RS02830 0.14 -0.7 623,783 - DDA3937_RS02830 0.14 -0.2 623,794 - DDA3937_RS02830 0.15 -1.5 623,872 + DDA3937_RS02830 0.20 -2.1 623,873 - DDA3937_RS02830 0.20 -1.4 623,890 + DDA3937_RS02830 0.21 -0.7 623,890 + DDA3937_RS02830 0.21 -0.5 623,890 + DDA3937_RS02830 0.21 -0.6 623,891 - DDA3937_RS02830 0.22 -0.2 623,891 - DDA3937_RS02830 0.22 -1.8 623,891 - DDA3937_RS02830 0.22 -1.8 623,959 + DDA3937_RS02830 0.26 +0.2 623,959 + DDA3937_RS02830 0.26 -0.8 623,959 + DDA3937_RS02830 0.26 -1.8 623,960 - DDA3937_RS02830 0.26 +0.8 623,960 - DDA3937_RS02830 0.26 +0.2 624,049 - DDA3937_RS02830 0.32 -1.2 624,100 + DDA3937_RS02830 0.36 -0.5 624,100 + DDA3937_RS02830 0.36 +1.5 624,101 - DDA3937_RS02830 0.36 -0.5 624,101 - DDA3937_RS02830 0.36 -0.6 624,192 + DDA3937_RS02830 0.42 -0.2 624,192 + DDA3937_RS02830 0.42 +0.9 624,192 + DDA3937_RS02830 0.42 +2.2 624,192 + DDA3937_RS02830 0.42 -0.2 624,192 + DDA3937_RS02830 0.42 +1.4 624,192 + DDA3937_RS02830 0.42 -0.2 624,193 - DDA3937_RS02830 0.42 -0.6 624,193 - DDA3937_RS02830 0.42 -0.3 624,193 - DDA3937_RS02830 0.42 -3.0 624,305 - DDA3937_RS02830 0.50 -0.5 624,305 - DDA3937_RS02830 0.50 -0.1 624,310 + DDA3937_RS02830 0.50 -1.6 624,310 + DDA3937_RS02830 0.50 -0.1 624,310 + DDA3937_RS02830 0.50 -1.9 624,310 + DDA3937_RS02830 0.50 +0.5 624,310 + DDA3937_RS02830 0.50 +0.6 624,310 + DDA3937_RS02830 0.50 -1.6 624,311 - DDA3937_RS02830 0.50 -0.9 624,399 + DDA3937_RS02830 0.57 -0.3 624,399 + DDA3937_RS02830 0.57 -0.1 624,400 - DDA3937_RS02830 0.57 -0.8 624,400 - DDA3937_RS02830 0.57 +0.4 624,400 - DDA3937_RS02830 0.57 -1.4 624,400 - DDA3937_RS02830 0.57 -0.4 624,406 + DDA3937_RS02830 0.57 -0.6 624,406 + DDA3937_RS02830 0.57 +1.0 624,444 + DDA3937_RS02830 0.60 -0.6 624,554 + DDA3937_RS02830 0.67 -1.0 624,709 + DDA3937_RS02830 0.78 +0.1 624,709 + DDA3937_RS02830 0.78 -1.1 624,776 - DDA3937_RS02830 0.83 -0.6 624,776 - DDA3937_RS02830 0.83 -1.2 624,891 - -2.9 624,985 - +0.5 624,985 - -2.4 624,985 - -1.3 625,022 - -1.0 625,027 + -2.4 625,044 - -0.6 625,176 + -0.5 625,177 - +0.3 625,177 - -1.1 625,177 - -0.6 625,222 + DDA3937_RS02835 0.12 +0.2 625,222 + DDA3937_RS02835 0.12 -1.8 625,222 + DDA3937_RS02835 0.12 -1.2 625,222 + DDA3937_RS02835 0.12 -1.1 625,291 - -0.8 625,318 + DDA3937_RS02835 0.18 -1.0 625,319 - DDA3937_RS02835 0.18 -1.5 625,324 + DDA3937_RS02835 0.19 -0.5 625,381 + DDA3937_RS02835 0.22 -2.2 625,381 + DDA3937_RS02835 0.22 -1.7 625,381 + DDA3937_RS02835 0.22 -2.9 625,381 + DDA3937_RS02835 0.22 +1.8 625,382 - DDA3937_RS02835 0.22 -2.2 625,382 - DDA3937_RS02835 0.22 -2.1 625,523 - DDA3937_RS02835 0.32 -0.8 625,774 + DDA3937_RS02835 0.49 -1.3 625,775 - DDA3937_RS02835 0.49 +1.2 625,775 - DDA3937_RS02835 0.49 +0.2 625,903 + DDA3937_RS02835 0.57 -2.1 625,903 + -0.1 625,904 - DDA3937_RS02835 0.57 -1.6 625,904 - DDA3937_RS02835 0.57 +0.1 625,904 - DDA3937_RS02835 0.57 +0.7 626,019 + DDA3937_RS02835 0.65 -1.6 626,020 - DDA3937_RS02835 0.65 +0.5 626,020 - DDA3937_RS02835 0.65 -2.5
Or see this region's nucleotide sequence