Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02155 and DDA3937_RS02160 are separated by 342 nucleotides DDA3937_RS02160 and DDA3937_RS02165 are separated by 2 nucleotides DDA3937_RS02165 and DDA3937_RS02170 are separated by 13 nucleotides
DDA3937_RS02155: DDA3937_RS02155 - DeoR/GlpR transcriptional regulator, at 479,045 to 479,836
_RS02155
DDA3937_RS02160: DDA3937_RS02160 - transketolase, at 480,179 to 480,982
_RS02160
DDA3937_RS02165: DDA3937_RS02165 - transketolase, at 480,985 to 481,905
_RS02165
DDA3937_RS02170: DDA3937_RS02170 - D-threitol dehydrogenase, at 481,919 to 482,722
_RS02170
Position (kb) 480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.202 kb on + strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.203 kb on - strand, within DDA3937_RS02155 at 479.268 kb on - strand, within DDA3937_RS02155 at 479.437 kb on + strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.656 kb on - strand, within DDA3937_RS02155 at 479.658 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.670 kb on + strand, within DDA3937_RS02155 at 479.671 kb on - strand, within DDA3937_RS02155 at 479.758 kb on + strand at 479.889 kb on - strand at 480.175 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.187 kb on - strand at 480.225 kb on - strand at 480.299 kb on - strand, within DDA3937_RS02160 at 480.299 kb on - strand, within DDA3937_RS02160 at 480.761 kb on - strand, within DDA3937_RS02160 at 480.875 kb on - strand, within DDA3937_RS02160 at 480.995 kb on + strand at 481.055 kb on + strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.056 kb on - strand at 481.059 kb on - strand at 481.059 kb on - strand at 481.261 kb on + strand at 481.262 kb on - strand, within DDA3937_RS02165 at 481.262 kb on - strand at 481.338 kb on + strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.339 kb on - strand, within DDA3937_RS02165 at 481.453 kb on + strand, within DDA3937_RS02165 at 481.453 kb on + strand at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.454 kb on - strand, within DDA3937_RS02165 at 481.456 kb on - strand at 481.682 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.707 kb on - strand, within DDA3937_RS02165 at 481.750 kb on - strand, within DDA3937_RS02165 at 481.804 kb on - strand, within DDA3937_RS02165 at 481.810 kb on - strand, within DDA3937_RS02165 at 481.869 kb on - strand at 481.937 kb on + strand at 481.938 kb on - strand at 481.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 479,202 + DDA3937_RS02155 0.20 +0.4 479,202 + DDA3937_RS02155 0.20 +0.1 479,202 + DDA3937_RS02155 0.20 +0.8 479,203 - DDA3937_RS02155 0.20 +0.5 479,203 - DDA3937_RS02155 0.20 +1.3 479,203 - DDA3937_RS02155 0.20 +0.4 479,203 - DDA3937_RS02155 0.20 +0.2 479,268 - DDA3937_RS02155 0.28 +0.5 479,437 + DDA3937_RS02155 0.49 +0.7 479,656 - DDA3937_RS02155 0.77 +1.2 479,656 - DDA3937_RS02155 0.77 +1.3 479,658 + DDA3937_RS02155 0.77 +0.2 479,670 + DDA3937_RS02155 0.79 +0.4 479,670 + DDA3937_RS02155 0.79 -0.5 479,670 + DDA3937_RS02155 0.79 -2.1 479,671 - DDA3937_RS02155 0.79 +0.4 479,758 + +0.2 479,889 - +0.3 480,175 - -0.2 480,187 - +0.3 480,187 - +1.4 480,187 - +0.4 480,187 - +0.0 480,225 - +2.6 480,299 - DDA3937_RS02160 0.15 -0.3 480,299 - DDA3937_RS02160 0.15 +1.7 480,761 - DDA3937_RS02160 0.72 -1.3 480,875 - DDA3937_RS02160 0.87 +1.8 480,995 + +0.7 481,055 + -0.5 481,056 - -0.4 481,056 - -0.6 481,056 - -0.5 481,056 - -0.2 481,056 - -0.5 481,059 - -2.1 481,059 - +0.2 481,261 + +0.3 481,262 - DDA3937_RS02165 0.30 -1.6 481,262 - -0.7 481,338 + DDA3937_RS02165 0.38 -1.9 481,339 - DDA3937_RS02165 0.38 -0.0 481,339 - DDA3937_RS02165 0.38 -2.8 481,339 - DDA3937_RS02165 0.38 +0.7 481,339 - DDA3937_RS02165 0.38 -0.2 481,339 - DDA3937_RS02165 0.38 +1.4 481,339 - DDA3937_RS02165 0.38 +1.5 481,339 - DDA3937_RS02165 0.38 +0.0 481,339 - DDA3937_RS02165 0.38 +0.3 481,339 - DDA3937_RS02165 0.38 -0.5 481,453 + DDA3937_RS02165 0.51 -1.6 481,453 + -0.7 481,454 - DDA3937_RS02165 0.51 -1.3 481,454 - DDA3937_RS02165 0.51 -0.7 481,454 - DDA3937_RS02165 0.51 -0.5 481,454 - DDA3937_RS02165 0.51 -2.3 481,454 - DDA3937_RS02165 0.51 +0.0 481,454 - DDA3937_RS02165 0.51 +0.0 481,454 - DDA3937_RS02165 0.51 -0.3 481,454 - DDA3937_RS02165 0.51 +0.5 481,456 - +2.4 481,682 - DDA3937_RS02165 0.76 -0.5 481,707 - DDA3937_RS02165 0.78 -1.1 481,707 - DDA3937_RS02165 0.78 -0.6 481,750 - DDA3937_RS02165 0.83 +0.3 481,804 - DDA3937_RS02165 0.89 +0.2 481,810 - DDA3937_RS02165 0.90 +0.4 481,869 - -1.3 481,937 + -0.4 481,938 - +0.2 481,938 - +0.7
Or see this region's nucleotide sequence