Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02110 and DDA3937_RS02115 are separated by 70 nucleotides DDA3937_RS02115 and DDA3937_RS02120 are separated by 177 nucleotides DDA3937_RS02120 and DDA3937_RS02125 are separated by 216 nucleotides
DDA3937_RS02110: DDA3937_RS02110 - LysE family translocator, at 470,489 to 471,115
_RS02110
DDA3937_RS02115: DDA3937_RS02115 - amino acid transporter, at 471,186 to 471,812
_RS02115
DDA3937_RS02120: DDA3937_RS02120 - HNH endonuclease, at 471,990 to 472,766
_RS02120
DDA3937_RS02125: DDA3937_RS02125 - MFS transporter, at 472,983 to 474,374
_RS02125
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 471.024 kb on + strand, within DDA3937_RS02110 at 471.073 kb on + strand at 471.073 kb on + strand at 471.073 kb on + strand at 471.113 kb on + strand at 471.113 kb on + strand at 471.114 kb on - strand at 471.114 kb on - strand at 471.114 kb on - strand at 471.129 kb on + strand at 471.130 kb on - strand at 471.145 kb on + strand at 471.145 kb on + strand at 471.145 kb on + strand at 471.187 kb on + strand at 471.187 kb on + strand at 471.188 kb on - strand at 471.188 kb on - strand at 471.188 kb on - strand at 471.189 kb on + strand at 471.189 kb on + strand at 471.190 kb on - strand at 471.190 kb on - strand at 471.196 kb on + strand at 471.196 kb on + strand at 471.224 kb on + strand at 471.235 kb on + strand at 471.236 kb on - strand at 471.322 kb on + strand, within DDA3937_RS02115 at 471.322 kb on + strand, within DDA3937_RS02115 at 471.323 kb on - strand, within DDA3937_RS02115 at 471.323 kb on - strand, within DDA3937_RS02115 at 471.332 kb on + strand, within DDA3937_RS02115 at 471.333 kb on - strand, within DDA3937_RS02115 at 471.333 kb on - strand, within DDA3937_RS02115 at 471.361 kb on + strand, within DDA3937_RS02115 at 471.361 kb on + strand, within DDA3937_RS02115 at 471.362 kb on - strand, within DDA3937_RS02115 at 471.427 kb on + strand, within DDA3937_RS02115 at 471.427 kb on + strand, within DDA3937_RS02115 at 471.428 kb on - strand, within DDA3937_RS02115 at 471.556 kb on + strand, within DDA3937_RS02115 at 471.557 kb on - strand, within DDA3937_RS02115 at 471.557 kb on - strand, within DDA3937_RS02115 at 471.563 kb on - strand, within DDA3937_RS02115 at 471.782 kb on + strand at 471.782 kb on + strand at 471.782 kb on + strand at 471.800 kb on + strand at 471.800 kb on + strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.801 kb on - strand at 471.804 kb on + strand at 471.805 kb on - strand at 471.905 kb on - strand at 471.940 kb on - strand at 471.940 kb on - strand at 471.944 kb on + strand at 471.945 kb on - strand at 471.966 kb on - strand at 471.966 kb on - strand at 471.966 kb on - strand at 471.992 kb on - strand at 472.007 kb on + strand at 472.028 kb on + strand at 472.029 kb on - strand at 472.048 kb on + strand at 472.048 kb on + strand at 472.048 kb on + strand at 472.049 kb on - strand at 472.087 kb on + strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand, within DDA3937_RS02120 at 472.088 kb on - strand at 472.088 kb on - strand, within DDA3937_RS02120 at 472.112 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.149 kb on + strand, within DDA3937_RS02120 at 472.150 kb on - strand, within DDA3937_RS02120 at 472.150 kb on - strand, within DDA3937_RS02120 at 472.150 kb on - strand, within DDA3937_RS02120 at 472.177 kb on - strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.218 kb on + strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.219 kb on - strand, within DDA3937_RS02120 at 472.271 kb on + strand, within DDA3937_RS02120 at 472.272 kb on - strand, within DDA3937_RS02120 at 472.272 kb on - strand, within DDA3937_RS02120 at 472.287 kb on + strand, within DDA3937_RS02120 at 472.313 kb on + strand, within DDA3937_RS02120 at 472.314 kb on - strand, within DDA3937_RS02120 at 472.408 kb on + strand, within DDA3937_RS02120 at 472.658 kb on - strand, within DDA3937_RS02120 at 472.658 kb on - strand, within DDA3937_RS02120 at 472.701 kb on + strand at 472.711 kb on + strand at 472.711 kb on + strand at 472.712 kb on - strand at 472.712 kb on - strand at 472.712 kb on - strand at 472.712 kb on - strand at 472.719 kb on - strand at 472.731 kb on + strand at 472.731 kb on + strand at 472.732 kb on - strand at 472.789 kb on - strand at 472.813 kb on - strand at 472.813 kb on - strand at 472.813 kb on - strand at 472.813 kb on - strand at 472.918 kb on + strand at 472.980 kb on - strand at 473.184 kb on + strand, within DDA3937_RS02125 at 473.185 kb on - strand, within DDA3937_RS02125 at 473.257 kb on - strand at 473.257 kb on - strand, within DDA3937_RS02125 at 473.280 kb on - strand, within DDA3937_RS02125 at 473.404 kb on - strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.743 kb on - strand, within DDA3937_RS02125
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 471,024 + DDA3937_RS02110 0.85 +0.1 471,073 + +0.7 471,073 + -1.5 471,073 + -0.8 471,113 + -0.7 471,113 + +0.0 471,114 - -2.2 471,114 - +0.3 471,114 - -0.7 471,129 + -0.6 471,130 - +0.1 471,145 + +0.1 471,145 + -0.5 471,145 + -0.5 471,187 + +0.5 471,187 + -2.5 471,188 - +0.7 471,188 - -2.9 471,188 - +0.1 471,189 + +0.4 471,189 + +0.3 471,190 - -0.2 471,190 - -0.1 471,196 + -0.2 471,196 + -0.9 471,224 + -0.4 471,235 + -0.0 471,236 - -0.4 471,322 + DDA3937_RS02115 0.22 -2.0 471,322 + DDA3937_RS02115 0.22 -0.4 471,323 - DDA3937_RS02115 0.22 +0.5 471,323 - DDA3937_RS02115 0.22 +1.8 471,332 + DDA3937_RS02115 0.23 +0.1 471,333 - DDA3937_RS02115 0.23 +0.2 471,333 - DDA3937_RS02115 0.23 -0.1 471,361 + DDA3937_RS02115 0.28 -0.8 471,361 + DDA3937_RS02115 0.28 +0.6 471,362 - DDA3937_RS02115 0.28 +0.1 471,427 + DDA3937_RS02115 0.38 +0.7 471,427 + DDA3937_RS02115 0.38 -0.9 471,428 - DDA3937_RS02115 0.39 -0.0 471,556 + DDA3937_RS02115 0.59 -0.7 471,557 - DDA3937_RS02115 0.59 +1.7 471,557 - DDA3937_RS02115 0.59 -0.2 471,563 - DDA3937_RS02115 0.60 -0.3 471,782 + -0.7 471,782 + -0.0 471,782 + -0.7 471,800 + -0.8 471,800 + +1.3 471,801 - +0.7 471,801 - -1.2 471,801 - +0.3 471,801 - -1.4 471,801 - -0.2 471,804 + -0.2 471,805 - -0.2 471,905 - -0.3 471,940 - -0.1 471,940 - +0.3 471,944 + -1.3 471,945 - +0.2 471,966 - +0.6 471,966 - -2.8 471,966 - -0.8 471,992 - +0.8 472,007 + +0.2 472,028 + +0.8 472,029 - -0.1 472,048 + +0.4 472,048 + -0.1 472,048 + +0.0 472,049 - -0.3 472,087 + DDA3937_RS02120 0.12 -0.5 472,088 - DDA3937_RS02120 0.13 +0.2 472,088 - DDA3937_RS02120 0.13 -1.8 472,088 - DDA3937_RS02120 0.13 -1.5 472,088 - DDA3937_RS02120 0.13 +0.1 472,088 - DDA3937_RS02120 0.13 +0.0 472,088 - +0.8 472,088 - DDA3937_RS02120 0.13 +3.6 472,112 + DDA3937_RS02120 0.16 -0.7 472,149 + DDA3937_RS02120 0.20 +0.2 472,149 + DDA3937_RS02120 0.20 -1.7 472,149 + DDA3937_RS02120 0.20 +0.7 472,149 + DDA3937_RS02120 0.20 -0.1 472,149 + DDA3937_RS02120 0.20 -1.0 472,150 - DDA3937_RS02120 0.21 -0.7 472,150 - DDA3937_RS02120 0.21 -0.4 472,150 - DDA3937_RS02120 0.21 -1.7 472,177 - DDA3937_RS02120 0.24 -0.2 472,218 + DDA3937_RS02120 0.29 -1.9 472,218 + DDA3937_RS02120 0.29 -1.0 472,218 + DDA3937_RS02120 0.29 -1.7 472,218 + DDA3937_RS02120 0.29 -1.1 472,218 + DDA3937_RS02120 0.29 -0.4 472,218 + DDA3937_RS02120 0.29 +2.1 472,219 - DDA3937_RS02120 0.29 -0.0 472,219 - DDA3937_RS02120 0.29 -0.1 472,219 - DDA3937_RS02120 0.29 -0.3 472,219 - DDA3937_RS02120 0.29 +0.5 472,219 - DDA3937_RS02120 0.29 -0.0 472,219 - DDA3937_RS02120 0.29 -0.2 472,219 - DDA3937_RS02120 0.29 -0.7 472,271 + DDA3937_RS02120 0.36 +0.3 472,272 - DDA3937_RS02120 0.36 -1.4 472,272 - DDA3937_RS02120 0.36 -1.6 472,287 + DDA3937_RS02120 0.38 +0.5 472,313 + DDA3937_RS02120 0.42 -0.7 472,314 - DDA3937_RS02120 0.42 +0.7 472,408 + DDA3937_RS02120 0.54 +0.4 472,658 - DDA3937_RS02120 0.86 -0.5 472,658 - DDA3937_RS02120 0.86 -0.5 472,701 + +0.7 472,711 + +0.1 472,711 + -0.7 472,712 - -0.1 472,712 - -1.7 472,712 - -0.9 472,712 - -0.6 472,719 - -2.4 472,731 + +0.7 472,731 + -0.7 472,732 - -0.6 472,789 - -0.5 472,813 - +2.2 472,813 - +0.7 472,813 - -0.3 472,813 - +0.8 472,918 + -0.1 472,980 - -0.6 473,184 + DDA3937_RS02125 0.14 -0.5 473,185 - DDA3937_RS02125 0.15 -0.5 473,257 - +0.8 473,257 - DDA3937_RS02125 0.20 +1.3 473,280 - DDA3937_RS02125 0.21 -0.9 473,404 - DDA3937_RS02125 0.30 +0.3 473,414 + DDA3937_RS02125 0.31 -1.2 473,414 + DDA3937_RS02125 0.31 -0.4 473,414 + DDA3937_RS02125 0.31 +0.1 473,415 - DDA3937_RS02125 0.31 -0.4 473,415 - DDA3937_RS02125 0.31 +0.5 473,415 - DDA3937_RS02125 0.31 -0.7 473,534 + DDA3937_RS02125 0.40 +1.0 473,534 + DDA3937_RS02125 0.40 +0.5 473,534 + DDA3937_RS02125 0.40 -0.3 473,534 + DDA3937_RS02125 0.40 -0.0 473,535 - DDA3937_RS02125 0.40 +0.6 473,535 - DDA3937_RS02125 0.40 -2.0 473,535 - DDA3937_RS02125 0.40 -0.8 473,535 - DDA3937_RS02125 0.40 -0.9 473,535 - DDA3937_RS02125 0.40 -1.3 473,535 - DDA3937_RS02125 0.40 -0.1 473,536 + DDA3937_RS02125 0.40 -1.3 473,536 + DDA3937_RS02125 0.40 +0.0 473,536 + DDA3937_RS02125 0.40 -1.1 473,537 - DDA3937_RS02125 0.40 -1.2 473,537 - DDA3937_RS02125 0.40 +0.3 473,743 - DDA3937_RS02125 0.55 -1.2
Or see this region's nucleotide sequence