Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01935 and DDA3937_RS01940 are separated by 94 nucleotides DDA3937_RS01940 and DDA3937_RS01945 are separated by 162 nucleotides DDA3937_RS01945 and DDA3937_RS01950 are separated by 74 nucleotides
DDA3937_RS01935: DDA3937_RS01935 - 6-phospho-beta-glucosidase, at 434,025 to 435,461
_RS01935
DDA3937_RS01940: DDA3937_RS01940 - ornithine carbamoyltransferase, at 435,556 to 436,572
_RS01940
DDA3937_RS01945: DDA3937_RS01945 - ribonuclease E inhibitor RraB, at 436,735 to 437,163
_RS01945
DDA3937_RS01950: DDA3937_RS01950 - GNAT family N-acetyltransferase, at 437,238 to 437,741
_RS01950
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 434.556 kb on - strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.646 kb on + strand, within DDA3937_RS01935 at 434.647 kb on - strand, within DDA3937_RS01935 at 434.647 kb on - strand, within DDA3937_RS01935 at 434.647 kb on - strand, within DDA3937_RS01935 at 434.752 kb on - strand, within DDA3937_RS01935 at 434.752 kb on - strand, within DDA3937_RS01935 at 434.752 kb on - strand, within DDA3937_RS01935 at 434.754 kb on + strand, within DDA3937_RS01935 at 434.754 kb on + strand, within DDA3937_RS01935 at 434.755 kb on - strand, within DDA3937_RS01935 at 434.755 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.818 kb on - strand, within DDA3937_RS01935 at 434.823 kb on - strand, within DDA3937_RS01935 at 434.857 kb on - strand, within DDA3937_RS01935 at 434.943 kb on + strand, within DDA3937_RS01935 at 434.944 kb on - strand, within DDA3937_RS01935 at 434.944 kb on - strand, within DDA3937_RS01935 at 434.944 kb on - strand, within DDA3937_RS01935 at 434.954 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.958 kb on + strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.959 kb on - strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.961 kb on + strand, within DDA3937_RS01935 at 434.962 kb on - strand at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand, within DDA3937_RS01935 at 434.962 kb on - strand at 435.042 kb on - strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.117 kb on + strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.118 kb on - strand, within DDA3937_RS01935 at 435.144 kb on - strand, within DDA3937_RS01935 at 435.173 kb on + strand, within DDA3937_RS01935 at 435.173 kb on + strand, within DDA3937_RS01935 at 435.174 kb on - strand, within DDA3937_RS01935 at 435.174 kb on - strand, within DDA3937_RS01935 at 435.174 kb on - strand, within DDA3937_RS01935 at 435.233 kb on + strand, within DDA3937_RS01935 at 435.285 kb on + strand, within DDA3937_RS01935 at 435.459 kb on + strand at 435.459 kb on + strand at 435.460 kb on - strand at 435.460 kb on - strand at 435.460 kb on - strand at 435.460 kb on - strand at 435.557 kb on + strand at 435.844 kb on + strand, within DDA3937_RS01940 at 435.845 kb on - strand, within DDA3937_RS01940 at 435.883 kb on - strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.884 kb on + strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.885 kb on - strand, within DDA3937_RS01940 at 435.895 kb on + strand, within DDA3937_RS01940 at 435.896 kb on - strand, within DDA3937_RS01940 at 436.056 kb on + strand, within DDA3937_RS01940 at 436.056 kb on + strand, within DDA3937_RS01940 at 436.057 kb on - strand, within DDA3937_RS01940 at 436.057 kb on - strand, within DDA3937_RS01940 at 436.068 kb on + strand, within DDA3937_RS01940 at 436.091 kb on + strand, within DDA3937_RS01940 at 436.271 kb on + strand, within DDA3937_RS01940 at 436.271 kb on + strand, within DDA3937_RS01940 at 436.272 kb on - strand, within DDA3937_RS01940 at 436.346 kb on + strand, within DDA3937_RS01940 at 436.347 kb on - strand, within DDA3937_RS01940 at 436.371 kb on - strand, within DDA3937_RS01940 at 436.371 kb on - strand, within DDA3937_RS01940 at 436.560 kb on - strand at 436.560 kb on - strand at 436.585 kb on + strand at 436.625 kb on - strand at 436.626 kb on + strand at 436.699 kb on + strand at 436.699 kb on + strand at 436.705 kb on + strand at 436.828 kb on + strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.829 kb on - strand, within DDA3937_RS01945 at 436.906 kb on + strand, within DDA3937_RS01945 at 436.971 kb on + strand, within DDA3937_RS01945 at 436.972 kb on - strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.056 kb on + strand, within DDA3937_RS01945 at 437.057 kb on - strand, within DDA3937_RS01945 at 437.057 kb on - strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.074 kb on + strand, within DDA3937_RS01945 at 437.075 kb on - strand, within DDA3937_RS01945 at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.131 kb on + strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.132 kb on - strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.239 kb on + strand at 437.240 kb on - strand at 437.240 kb on - strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.241 kb on + strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.242 kb on - strand at 437.291 kb on + strand, within DDA3937_RS01950 at 437.291 kb on + strand, within DDA3937_RS01950 at 437.291 kb on + strand, within DDA3937_RS01950 at 437.292 kb on - strand, within DDA3937_RS01950 at 437.368 kb on + strand, within DDA3937_RS01950 at 437.369 kb on - strand, within DDA3937_RS01950 at 437.369 kb on - strand, within DDA3937_RS01950 at 437.462 kb on - strand, within DDA3937_RS01950 at 437.462 kb on - strand, within DDA3937_RS01950 at 437.550 kb on + strand, within DDA3937_RS01950
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 434,556 - DDA3937_RS01935 0.37 -1.6 434,646 + DDA3937_RS01935 0.43 -0.1 434,646 + DDA3937_RS01935 0.43 -0.2 434,646 + DDA3937_RS01935 0.43 +0.4 434,646 + DDA3937_RS01935 0.43 -0.7 434,646 + DDA3937_RS01935 0.43 -0.2 434,646 + DDA3937_RS01935 0.43 -0.3 434,646 + DDA3937_RS01935 0.43 +0.7 434,647 - DDA3937_RS01935 0.43 -0.9 434,647 - DDA3937_RS01935 0.43 +0.2 434,647 - DDA3937_RS01935 0.43 -0.7 434,752 - DDA3937_RS01935 0.51 -0.5 434,752 - DDA3937_RS01935 0.51 -0.1 434,752 - DDA3937_RS01935 0.51 +0.3 434,754 + DDA3937_RS01935 0.51 -0.3 434,754 + DDA3937_RS01935 0.51 -0.9 434,755 - DDA3937_RS01935 0.51 +0.1 434,755 - DDA3937_RS01935 0.51 -0.7 434,818 - DDA3937_RS01935 0.55 +0.0 434,818 - DDA3937_RS01935 0.55 -0.8 434,818 - DDA3937_RS01935 0.55 -0.8 434,818 - DDA3937_RS01935 0.55 -1.3 434,823 - DDA3937_RS01935 0.56 -0.4 434,857 - DDA3937_RS01935 0.58 -0.5 434,943 + DDA3937_RS01935 0.64 +0.3 434,944 - DDA3937_RS01935 0.64 -0.3 434,944 - DDA3937_RS01935 0.64 -0.6 434,944 - DDA3937_RS01935 0.64 +0.3 434,954 + DDA3937_RS01935 0.65 -0.5 434,958 + DDA3937_RS01935 0.65 -0.0 434,958 + DDA3937_RS01935 0.65 +0.3 434,958 + DDA3937_RS01935 0.65 -0.5 434,958 + DDA3937_RS01935 0.65 -0.3 434,958 + DDA3937_RS01935 0.65 -0.5 434,959 - DDA3937_RS01935 0.65 -0.7 434,959 - DDA3937_RS01935 0.65 +0.0 434,959 - DDA3937_RS01935 0.65 -0.3 434,959 - DDA3937_RS01935 0.65 -0.2 434,959 - DDA3937_RS01935 0.65 -0.1 434,959 - DDA3937_RS01935 0.65 +0.4 434,959 - DDA3937_RS01935 0.65 -0.1 434,961 + DDA3937_RS01935 0.65 +0.9 434,961 + DDA3937_RS01935 0.65 +0.9 434,961 + DDA3937_RS01935 0.65 +0.5 434,961 + DDA3937_RS01935 0.65 -0.6 434,961 + DDA3937_RS01935 0.65 -0.3 434,961 + DDA3937_RS01935 0.65 -0.4 434,961 + DDA3937_RS01935 0.65 +0.0 434,961 + DDA3937_RS01935 0.65 -0.3 434,962 - +1.9 434,962 - DDA3937_RS01935 0.65 -1.4 434,962 - DDA3937_RS01935 0.65 -2.5 434,962 - DDA3937_RS01935 0.65 -1.1 434,962 - DDA3937_RS01935 0.65 -0.6 434,962 - DDA3937_RS01935 0.65 -0.7 434,962 - DDA3937_RS01935 0.65 +1.4 434,962 - DDA3937_RS01935 0.65 -0.2 434,962 - DDA3937_RS01935 0.65 +0.8 434,962 - DDA3937_RS01935 0.65 -1.6 434,962 - DDA3937_RS01935 0.65 +0.2 434,962 - DDA3937_RS01935 0.65 +0.0 434,962 - +0.7 435,042 - DDA3937_RS01935 0.71 +0.6 435,117 + DDA3937_RS01935 0.76 -0.9 435,117 + DDA3937_RS01935 0.76 -1.9 435,117 + DDA3937_RS01935 0.76 +0.2 435,117 + DDA3937_RS01935 0.76 -0.7 435,117 + DDA3937_RS01935 0.76 -0.3 435,118 - DDA3937_RS01935 0.76 -0.3 435,118 - DDA3937_RS01935 0.76 -0.5 435,118 - DDA3937_RS01935 0.76 -0.7 435,118 - DDA3937_RS01935 0.76 +0.9 435,118 - DDA3937_RS01935 0.76 -0.2 435,118 - DDA3937_RS01935 0.76 -1.3 435,118 - DDA3937_RS01935 0.76 +1.4 435,118 - DDA3937_RS01935 0.76 -0.2 435,118 - DDA3937_RS01935 0.76 -0.7 435,118 - DDA3937_RS01935 0.76 -1.1 435,144 - DDA3937_RS01935 0.78 +0.2 435,173 + DDA3937_RS01935 0.80 -0.6 435,173 + DDA3937_RS01935 0.80 -1.8 435,174 - DDA3937_RS01935 0.80 -3.2 435,174 - DDA3937_RS01935 0.80 -0.2 435,174 - DDA3937_RS01935 0.80 -0.9 435,233 + DDA3937_RS01935 0.84 -1.5 435,285 + DDA3937_RS01935 0.88 +0.0 435,459 + +1.7 435,459 + -0.4 435,460 - +1.0 435,460 - -0.5 435,460 - +0.4 435,460 - -1.1 435,557 + +0.3 435,844 + DDA3937_RS01940 0.28 +0.6 435,845 - DDA3937_RS01940 0.28 -1.7 435,883 - DDA3937_RS01940 0.32 -1.1 435,884 + DDA3937_RS01940 0.32 -1.2 435,884 + DDA3937_RS01940 0.32 +0.6 435,884 + DDA3937_RS01940 0.32 -0.5 435,884 + DDA3937_RS01940 0.32 -1.3 435,884 + DDA3937_RS01940 0.32 +0.6 435,884 + DDA3937_RS01940 0.32 -1.0 435,885 - DDA3937_RS01940 0.32 +0.6 435,885 - DDA3937_RS01940 0.32 +0.3 435,885 - DDA3937_RS01940 0.32 +0.2 435,885 - DDA3937_RS01940 0.32 +1.7 435,885 - DDA3937_RS01940 0.32 -0.8 435,895 + DDA3937_RS01940 0.33 -0.0 435,896 - DDA3937_RS01940 0.33 +1.3 436,056 + DDA3937_RS01940 0.49 -0.5 436,056 + DDA3937_RS01940 0.49 +0.2 436,057 - DDA3937_RS01940 0.49 -0.8 436,057 - DDA3937_RS01940 0.49 -1.3 436,068 + DDA3937_RS01940 0.50 -0.5 436,091 + DDA3937_RS01940 0.53 -1.0 436,271 + DDA3937_RS01940 0.70 -0.1 436,271 + DDA3937_RS01940 0.70 -1.1 436,272 - DDA3937_RS01940 0.70 -0.3 436,346 + DDA3937_RS01940 0.78 -0.4 436,347 - DDA3937_RS01940 0.78 +0.2 436,371 - DDA3937_RS01940 0.80 -0.1 436,371 - DDA3937_RS01940 0.80 -1.1 436,560 - +0.2 436,560 - -0.7 436,585 + -0.5 436,625 - -1.1 436,626 + +0.5 436,699 + -0.8 436,699 + +0.5 436,705 + -0.5 436,828 + DDA3937_RS01945 0.22 +0.5 436,829 - DDA3937_RS01945 0.22 +2.1 436,829 - DDA3937_RS01945 0.22 -0.7 436,829 - DDA3937_RS01945 0.22 +0.6 436,829 - DDA3937_RS01945 0.22 +2.3 436,829 - DDA3937_RS01945 0.22 -1.2 436,906 + DDA3937_RS01945 0.40 +2.3 436,971 + DDA3937_RS01945 0.55 +0.2 436,972 - DDA3937_RS01945 0.55 +1.6 437,056 + DDA3937_RS01945 0.75 +0.0 437,056 + DDA3937_RS01945 0.75 +0.2 437,056 + DDA3937_RS01945 0.75 +0.4 437,056 + DDA3937_RS01945 0.75 -0.8 437,057 - DDA3937_RS01945 0.75 +0.1 437,057 - DDA3937_RS01945 0.75 +2.1 437,074 + DDA3937_RS01945 0.79 +3.5 437,074 + DDA3937_RS01945 0.79 -0.1 437,074 + DDA3937_RS01945 0.79 -0.3 437,074 + DDA3937_RS01945 0.79 +1.1 437,074 + DDA3937_RS01945 0.79 -3.1 437,074 + DDA3937_RS01945 0.79 +0.3 437,074 + DDA3937_RS01945 0.79 -1.2 437,075 - DDA3937_RS01945 0.79 -1.3 437,131 + -0.7 437,131 + -1.5 437,131 + -1.9 437,131 + -0.3 437,131 + +0.1 437,132 - +1.9 437,132 - -1.8 437,132 - -0.6 437,132 - -0.2 437,132 - -0.4 437,132 - +0.3 437,132 - -0.8 437,132 - -0.3 437,132 - -0.1 437,239 + -0.8 437,239 + -1.7 437,239 + -0.3 437,239 + -0.9 437,240 - -0.1 437,240 - +0.7 437,241 + -1.5 437,241 + -1.5 437,241 + -0.5 437,241 + -0.4 437,241 + +0.1 437,242 - +0.3 437,242 - +0.3 437,242 - +0.7 437,242 - +0.6 437,291 + DDA3937_RS01950 0.11 -0.2 437,291 + DDA3937_RS01950 0.11 +0.5 437,291 + DDA3937_RS01950 0.11 -0.2 437,292 - DDA3937_RS01950 0.11 -1.1 437,368 + DDA3937_RS01950 0.26 -0.1 437,369 - DDA3937_RS01950 0.26 -0.3 437,369 - DDA3937_RS01950 0.26 -0.3 437,462 - DDA3937_RS01950 0.44 +0.5 437,462 - DDA3937_RS01950 0.44 -0.4 437,550 + DDA3937_RS01950 0.62 -0.1
Or see this region's nucleotide sequence