Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01825 and DDA3937_RS01830 are separated by 130 nucleotides DDA3937_RS01830 and DDA3937_RS01835 are separated by 128 nucleotides DDA3937_RS01835 and DDA3937_RS01840 are separated by 49 nucleotides
DDA3937_RS01825: DDA3937_RS01825 - TonB system transport protein ExbD, at 405,505 to 405,924
_RS01825
DDA3937_RS01830: DDA3937_RS01830 - Qnr family pentapeptide repeat protein, at 406,055 to 406,705
_RS01830
DDA3937_RS01835: DDA3937_RS01835 - LacI family DNA-binding transcriptional regulator, at 406,834 to 407,853
_RS01835
DDA3937_RS01840: DDA3937_RS01840 - sucrose-6-phosphate hydrolase, at 407,903 to 409,315
_RS01840
Position (kb) 406
407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 405.883 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.057 kb on - strand at 406.057 kb on - strand at 406.057 kb on - strand at 406.070 kb on + strand at 406.071 kb on - strand at 406.096 kb on + strand at 406.096 kb on + strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.100 kb on + strand at 406.101 kb on - strand at 406.111 kb on + strand at 406.111 kb on + strand at 406.112 kb on - strand at 406.112 kb on - strand at 406.116 kb on - strand at 406.138 kb on + strand, within DDA3937_RS01830 at 406.138 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.176 kb on - strand, within DDA3937_RS01830 at 406.219 kb on + strand, within DDA3937_RS01830 at 406.219 kb on + strand, within DDA3937_RS01830 at 406.220 kb on - strand, within DDA3937_RS01830 at 406.220 kb on - strand, within DDA3937_RS01830 at 406.295 kb on + strand, within DDA3937_RS01830 at 406.296 kb on - strand, within DDA3937_RS01830 at 406.314 kb on - strand, within DDA3937_RS01830 at 406.314 kb on - strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.387 kb on + strand, within DDA3937_RS01830 at 406.445 kb on + strand, within DDA3937_RS01830 at 406.480 kb on + strand, within DDA3937_RS01830 at 406.480 kb on + strand, within DDA3937_RS01830 at 406.481 kb on - strand, within DDA3937_RS01830 at 406.481 kb on - strand, within DDA3937_RS01830 at 406.532 kb on - strand, within DDA3937_RS01830 at 406.532 kb on - strand, within DDA3937_RS01830 at 406.534 kb on - strand, within DDA3937_RS01830 at 406.534 kb on - strand, within DDA3937_RS01830 at 406.599 kb on - strand, within DDA3937_RS01830 at 406.599 kb on - strand, within DDA3937_RS01830 at 406.624 kb on + strand, within DDA3937_RS01830 at 406.624 kb on + strand, within DDA3937_RS01830 at 406.633 kb on + strand at 406.634 kb on - strand, within DDA3937_RS01830 at 406.687 kb on + strand at 406.718 kb on - strand at 406.718 kb on - strand at 406.767 kb on - strand at 406.817 kb on - strand at 406.817 kb on - strand at 406.817 kb on - strand at 406.817 kb on - strand at 406.880 kb on + strand at 406.880 kb on + strand at 406.880 kb on + strand at 406.880 kb on + strand at 406.880 kb on + strand at 406.881 kb on - strand at 406.881 kb on - strand at 407.006 kb on + strand at 407.006 kb on + strand, within DDA3937_RS01835 at 407.177 kb on + strand, within DDA3937_RS01835 at 407.177 kb on + strand, within DDA3937_RS01835 at 407.177 kb on + strand, within DDA3937_RS01835 at 407.177 kb on + strand, within DDA3937_RS01835 at 407.177 kb on + strand, within DDA3937_RS01835 at 407.178 kb on - strand, within DDA3937_RS01835 at 407.178 kb on - strand, within DDA3937_RS01835 at 407.295 kb on - strand, within DDA3937_RS01835 at 407.427 kb on + strand, within DDA3937_RS01835 at 407.427 kb on + strand, within DDA3937_RS01835 at 407.428 kb on - strand, within DDA3937_RS01835 at 407.494 kb on + strand, within DDA3937_RS01835 at 407.615 kb on + strand at 407.616 kb on - strand, within DDA3937_RS01835 at 407.696 kb on + strand, within DDA3937_RS01835 at 407.859 kb on + strand at 407.865 kb on + strand at 407.866 kb on - strand at 407.866 kb on - strand at 407.904 kb on + strand at 407.904 kb on + strand at 407.904 kb on + strand at 407.904 kb on + strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.905 kb on - strand at 407.909 kb on + strand at 407.910 kb on - strand at 407.945 kb on - strand at 407.945 kb on - strand at 407.945 kb on - strand at 407.995 kb on - strand at 407.995 kb on - strand at 408.065 kb on + strand, within DDA3937_RS01840 at 408.065 kb on + strand, within DDA3937_RS01840 at 408.066 kb on - strand, within DDA3937_RS01840 at 408.170 kb on + strand, within DDA3937_RS01840 at 408.171 kb on - strand, within DDA3937_RS01840 at 408.249 kb on + strand, within DDA3937_RS01840 at 408.250 kb on - strand, within DDA3937_RS01840 at 408.365 kb on - strand, within DDA3937_RS01840 at 408.365 kb on - strand, within DDA3937_RS01840 at 408.365 kb on - strand, within DDA3937_RS01840 at 408.538 kb on - strand, within DDA3937_RS01840 at 408.558 kb on + strand, within DDA3937_RS01840 at 408.559 kb on - strand, within DDA3937_RS01840 at 408.559 kb on - strand, within DDA3937_RS01840 at 408.583 kb on - strand, within DDA3937_RS01840 at 408.753 kb on + strand, within DDA3937_RS01840 at 408.804 kb on + strand, within DDA3937_RS01840 at 408.804 kb on + strand, within DDA3937_RS01840 at 408.804 kb on + strand, within DDA3937_RS01840 at 408.804 kb on + strand, within DDA3937_RS01840 at 408.804 kb on + strand, within DDA3937_RS01840 at 408.805 kb on - strand, within DDA3937_RS01840 at 408.805 kb on - strand, within DDA3937_RS01840 at 408.805 kb on - strand, within DDA3937_RS01840 at 408.842 kb on + strand, within DDA3937_RS01840 at 408.843 kb on - strand, within DDA3937_RS01840 at 408.843 kb on - strand, within DDA3937_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 405,883 + -3.0 406,056 + -0.1 406,056 + -0.2 406,056 + -0.8 406,057 - -0.5 406,057 - -1.3 406,057 - +1.9 406,070 + -0.3 406,071 - +1.2 406,096 + -1.5 406,096 + +1.9 406,097 - +2.4 406,097 - -0.6 406,097 - -0.6 406,097 - -0.5 406,100 + -0.6 406,101 - -0.5 406,111 + +0.2 406,111 + -2.8 406,112 - -0.4 406,112 - -1.0 406,116 - -0.6 406,138 + DDA3937_RS01830 0.13 +0.0 406,138 + DDA3937_RS01830 0.13 +0.7 406,175 + DDA3937_RS01830 0.18 -0.1 406,175 + DDA3937_RS01830 0.18 -1.1 406,175 + DDA3937_RS01830 0.18 -1.5 406,176 - DDA3937_RS01830 0.19 -1.8 406,219 + DDA3937_RS01830 0.25 -0.3 406,219 + DDA3937_RS01830 0.25 -0.6 406,220 - DDA3937_RS01830 0.25 -1.1 406,220 - DDA3937_RS01830 0.25 +0.1 406,295 + DDA3937_RS01830 0.37 +0.2 406,296 - DDA3937_RS01830 0.37 -0.4 406,314 - DDA3937_RS01830 0.40 -0.7 406,314 - DDA3937_RS01830 0.40 +2.6 406,359 + DDA3937_RS01830 0.47 +0.1 406,359 + DDA3937_RS01830 0.47 -0.2 406,359 + DDA3937_RS01830 0.47 +0.0 406,359 + DDA3937_RS01830 0.47 -0.0 406,360 - DDA3937_RS01830 0.47 -0.2 406,360 - DDA3937_RS01830 0.47 -0.4 406,360 - DDA3937_RS01830 0.47 +0.3 406,360 - DDA3937_RS01830 0.47 +0.5 406,360 - DDA3937_RS01830 0.47 +1.4 406,387 + DDA3937_RS01830 0.51 +1.0 406,445 + DDA3937_RS01830 0.60 +0.5 406,480 + DDA3937_RS01830 0.65 -0.5 406,480 + DDA3937_RS01830 0.65 +0.2 406,481 - DDA3937_RS01830 0.65 -0.6 406,481 - DDA3937_RS01830 0.65 -0.3 406,532 - DDA3937_RS01830 0.73 +0.6 406,532 - DDA3937_RS01830 0.73 +2.5 406,534 - DDA3937_RS01830 0.74 -0.5 406,534 - DDA3937_RS01830 0.74 -1.9 406,599 - DDA3937_RS01830 0.84 -1.3 406,599 - DDA3937_RS01830 0.84 -0.2 406,624 + DDA3937_RS01830 0.87 -1.0 406,624 + DDA3937_RS01830 0.87 -0.8 406,633 + -0.3 406,634 - DDA3937_RS01830 0.89 +2.9 406,687 + +0.1 406,718 - -0.7 406,718 - -1.3 406,767 - +2.1 406,817 - +0.1 406,817 - -0.8 406,817 - -0.3 406,817 - +1.5 406,880 + +0.8 406,880 + -0.3 406,880 + -1.6 406,880 + -0.8 406,880 + +0.7 406,881 - -0.3 406,881 - -2.2 407,006 + +0.7 407,006 + DDA3937_RS01835 0.17 +1.4 407,177 + DDA3937_RS01835 0.34 +2.2 407,177 + DDA3937_RS01835 0.34 -0.9 407,177 + DDA3937_RS01835 0.34 -0.1 407,177 + DDA3937_RS01835 0.34 -0.6 407,177 + DDA3937_RS01835 0.34 +1.2 407,178 - DDA3937_RS01835 0.34 +0.5 407,178 - DDA3937_RS01835 0.34 +1.2 407,295 - DDA3937_RS01835 0.45 -0.8 407,427 + DDA3937_RS01835 0.58 -0.8 407,427 + DDA3937_RS01835 0.58 -0.1 407,428 - DDA3937_RS01835 0.58 +0.6 407,494 + DDA3937_RS01835 0.65 -1.8 407,615 + -0.3 407,616 - DDA3937_RS01835 0.77 -0.5 407,696 + DDA3937_RS01835 0.85 -0.9 407,859 + -0.3 407,865 + +0.1 407,866 - -0.4 407,866 - +0.1 407,904 + -0.1 407,904 + +0.4 407,904 + -0.3 407,904 + -0.1 407,905 - +0.1 407,905 - +5.9 407,905 - -0.5 407,905 - -0.2 407,909 + -1.4 407,910 - -0.8 407,945 - +0.5 407,945 - -1.9 407,945 - -0.2 407,995 - +0.0 407,995 - -0.8 408,065 + DDA3937_RS01840 0.11 -0.6 408,065 + DDA3937_RS01840 0.11 +0.7 408,066 - DDA3937_RS01840 0.12 -2.6 408,170 + DDA3937_RS01840 0.19 -0.4 408,171 - DDA3937_RS01840 0.19 -0.7 408,249 + DDA3937_RS01840 0.24 -0.1 408,250 - DDA3937_RS01840 0.25 -0.3 408,365 - DDA3937_RS01840 0.33 -2.3 408,365 - DDA3937_RS01840 0.33 -1.8 408,365 - DDA3937_RS01840 0.33 -1.3 408,538 - DDA3937_RS01840 0.45 -0.4 408,558 + DDA3937_RS01840 0.46 -0.1 408,559 - DDA3937_RS01840 0.46 +0.2 408,559 - DDA3937_RS01840 0.46 -0.9 408,583 - DDA3937_RS01840 0.48 -1.3 408,753 + DDA3937_RS01840 0.60 +0.5 408,804 + DDA3937_RS01840 0.64 -0.2 408,804 + DDA3937_RS01840 0.64 -0.3 408,804 + DDA3937_RS01840 0.64 -0.2 408,804 + DDA3937_RS01840 0.64 -0.3 408,804 + DDA3937_RS01840 0.64 -0.9 408,805 - DDA3937_RS01840 0.64 +0.1 408,805 - DDA3937_RS01840 0.64 +0.8 408,805 - DDA3937_RS01840 0.64 +0.1 408,842 + DDA3937_RS01840 0.66 +0.4 408,843 - DDA3937_RS01840 0.67 +2.8 408,843 - DDA3937_RS01840 0.67 -0.4
Or see this region's nucleotide sequence