Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01790

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01785 and DDA3937_RS01790 are separated by 87 nucleotidesDDA3937_RS01790 and DDA3937_RS01795 are separated by 59 nucleotides DDA3937_RS01785: DDA3937_RS01785 - 1-acylglycerol-3-phosphate O-acyltransferase, at 396,291 to 397,028 _RS01785 DDA3937_RS01790: DDA3937_RS01790 - cell division protein FtsP, at 397,116 to 398,534 _RS01790 DDA3937_RS01795: DDA3937_RS01795 - 2,5-didehydrogluconate reductase DkgA, at 398,594 to 399,439 _RS01795 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1 2at 396.178 kb on + strandat 396.256 kb on + strandat 396.256 kb on + strandat 396.258 kb on + strandat 396.258 kb on + strandat 396.258 kb on + strandat 396.258 kb on + strandat 396.261 kb on + strandat 397.115 kb on + strandat 397.115 kb on + strandat 397.115 kb on + strandat 397.116 kb on - strandat 397.116 kb on - strandat 397.116 kb on - strandat 397.481 kb on + strand, within DDA3937_RS01790at 397.481 kb on + strand, within DDA3937_RS01790at 397.482 kb on - strand, within DDA3937_RS01790at 397.485 kb on - strand, within DDA3937_RS01790at 397.575 kb on + strand, within DDA3937_RS01790at 397.576 kb on - strand, within DDA3937_RS01790at 397.576 kb on - strand, within DDA3937_RS01790at 397.576 kb on - strand, within DDA3937_RS01790at 397.578 kb on - strand, within DDA3937_RS01790at 397.610 kb on + strand, within DDA3937_RS01790at 397.610 kb on + strandat 397.611 kb on - strand, within DDA3937_RS01790at 397.611 kb on - strand, within DDA3937_RS01790at 397.611 kb on - strand, within DDA3937_RS01790at 397.611 kb on - strand, within DDA3937_RS01790at 397.645 kb on - strand, within DDA3937_RS01790at 397.692 kb on - strand, within DDA3937_RS01790at 397.710 kb on + strand, within DDA3937_RS01790at 397.711 kb on - strand, within DDA3937_RS01790at 397.737 kb on - strand, within DDA3937_RS01790at 397.776 kb on + strand, within DDA3937_RS01790at 397.777 kb on - strand, within DDA3937_RS01790at 397.777 kb on - strand, within DDA3937_RS01790at 397.840 kb on - strand, within DDA3937_RS01790at 397.840 kb on - strand, within DDA3937_RS01790at 397.967 kb on + strand, within DDA3937_RS01790at 397.967 kb on + strand, within DDA3937_RS01790at 397.968 kb on - strand, within DDA3937_RS01790at 398.054 kb on + strand, within DDA3937_RS01790at 398.055 kb on - strand, within DDA3937_RS01790at 398.055 kb on - strand, within DDA3937_RS01790at 398.147 kb on + strand, within DDA3937_RS01790at 398.245 kb on + strand, within DDA3937_RS01790at 398.245 kb on + strand, within DDA3937_RS01790at 398.246 kb on - strand, within DDA3937_RS01790at 398.246 kb on - strand, within DDA3937_RS01790at 398.266 kb on - strand, within DDA3937_RS01790at 398.281 kb on + strand, within DDA3937_RS01790at 398.337 kb on - strand, within DDA3937_RS01790at 398.460 kb on + strandat 398.461 kb on - strandat 398.463 kb on + strandat 398.678 kb on + strandat 398.678 kb on + strandat 398.678 kb on + strandat 398.678 kb on + strandat 398.678 kb on + strandat 398.679 kb on - strand, within DDA3937_RS01795at 399.026 kb on - strand, within DDA3937_RS01795at 399.061 kb on + strand, within DDA3937_RS01795at 399.093 kb on + strand, within DDA3937_RS01795at 399.093 kb on + strand, within DDA3937_RS01795at 399.093 kb on + strand, within DDA3937_RS01795at 399.094 kb on - strand, within DDA3937_RS01795at 399.129 kb on + strand, within DDA3937_RS01795at 399.141 kb on + strand, within DDA3937_RS01795at 399.141 kb on + strand, within DDA3937_RS01795at 399.142 kb on - strand, within DDA3937_RS01795at 399.229 kb on + strand, within DDA3937_RS01795at 399.258 kb on - strand, within DDA3937_RS01795at 399.258 kb on - strand, within DDA3937_RS01795at 399.288 kb on + strand, within DDA3937_RS01795at 399.288 kb on + strand, within DDA3937_RS01795at 399.289 kb on - strand, within DDA3937_RS01795at 399.292 kb on + strand, within DDA3937_RS01795at 399.386 kb on + strandat 399.386 kb on + strandat 399.400 kb on + strandat 399.401 kb on - strandat 399.401 kb on - strandat 399.419 kb on - strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.454 kb on + strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strandat 399.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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396,178 + +0.0
396,256 + -1.1
396,256 + -0.1
396,258 + +0.2
396,258 + -0.4
396,258 + -1.1
396,258 + +1.3
396,261 + -0.1
397,115 + -0.0
397,115 + -2.7
397,115 + -1.0
397,116 - -1.5
397,116 - +0.3
397,116 - -0.8
397,481 + DDA3937_RS01790 0.26 +0.3
397,481 + DDA3937_RS01790 0.26 -0.1
397,482 - DDA3937_RS01790 0.26 +1.7
397,485 - DDA3937_RS01790 0.26 -1.5
397,575 + DDA3937_RS01790 0.32 +0.1
397,576 - DDA3937_RS01790 0.32 +0.8
397,576 - DDA3937_RS01790 0.32 +2.2
397,576 - DDA3937_RS01790 0.32 +0.3
397,578 - DDA3937_RS01790 0.33 -0.1
397,610 + DDA3937_RS01790 0.35 -1.1
397,610 + -0.5
397,611 - DDA3937_RS01790 0.35 +0.2
397,611 - DDA3937_RS01790 0.35 +0.8
397,611 - DDA3937_RS01790 0.35 +0.7
397,611 - DDA3937_RS01790 0.35 -0.6
397,645 - DDA3937_RS01790 0.37 +0.4
397,692 - DDA3937_RS01790 0.41 +0.2
397,710 + DDA3937_RS01790 0.42 -1.5
397,711 - DDA3937_RS01790 0.42 +0.3
397,737 - DDA3937_RS01790 0.44 +0.2
397,776 + DDA3937_RS01790 0.47 +0.0
397,777 - DDA3937_RS01790 0.47 +0.8
397,777 - DDA3937_RS01790 0.47 +0.4
397,840 - DDA3937_RS01790 0.51 +0.6
397,840 - DDA3937_RS01790 0.51 +0.6
397,967 + DDA3937_RS01790 0.60 +1.3
397,967 + DDA3937_RS01790 0.60 +0.8
397,968 - DDA3937_RS01790 0.60 +0.6
398,054 + DDA3937_RS01790 0.66 -1.4
398,055 - DDA3937_RS01790 0.66 -0.7
398,055 - DDA3937_RS01790 0.66 -0.1
398,147 + DDA3937_RS01790 0.73 +1.1
398,245 + DDA3937_RS01790 0.80 -0.4
398,245 + DDA3937_RS01790 0.80 -0.1
398,246 - DDA3937_RS01790 0.80 +1.3
398,246 - DDA3937_RS01790 0.80 -1.3
398,266 - DDA3937_RS01790 0.81 -0.9
398,281 + DDA3937_RS01790 0.82 +0.2
398,337 - DDA3937_RS01790 0.86 -0.7
398,460 + +1.2
398,461 - -2.4
398,463 + -0.0
398,678 + -1.5
398,678 + -0.3
398,678 + +1.1
398,678 + -0.4
398,678 + +0.8
398,679 - DDA3937_RS01795 0.10 -0.6
399,026 - DDA3937_RS01795 0.51 +0.7
399,061 + DDA3937_RS01795 0.55 +0.2
399,093 + DDA3937_RS01795 0.59 -0.4
399,093 + DDA3937_RS01795 0.59 -1.2
399,093 + DDA3937_RS01795 0.59 +0.4
399,094 - DDA3937_RS01795 0.59 -1.2
399,129 + DDA3937_RS01795 0.63 -1.4
399,141 + DDA3937_RS01795 0.65 +0.4
399,141 + DDA3937_RS01795 0.65 -0.3
399,142 - DDA3937_RS01795 0.65 +0.1
399,229 + DDA3937_RS01795 0.75 +0.1
399,258 - DDA3937_RS01795 0.78 -1.3
399,258 - DDA3937_RS01795 0.78 -0.2
399,288 + DDA3937_RS01795 0.82 -0.9
399,288 + DDA3937_RS01795 0.82 -1.2
399,289 - DDA3937_RS01795 0.82 -0.3
399,292 + DDA3937_RS01795 0.83 -0.9
399,386 + -2.1
399,386 + +1.9
399,400 + +1.5
399,401 - +0.8
399,401 - -0.9
399,419 - -1.1
399,454 + -0.3
399,454 + -2.2
399,454 + -0.3
399,454 + -0.2
399,454 + -0.6
399,454 + +0.0
399,454 + -0.9
399,454 + -1.9
399,454 + +0.3
399,454 + -0.3
399,454 + -0.0
399,455 - +1.6
399,455 - -0.7
399,455 - -1.8
399,455 - -1.3
399,455 - -1.3
399,455 - -1.7
399,455 - +0.7
399,455 - -0.3
399,455 - +0.1
399,455 - -0.3

Or see this region's nucleotide sequence