Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00710 and DDA3937_RS00715 are separated by 466 nucleotides
DDA3937_RS00710: DDA3937_RS00710 - MCP four helix bundle domain-containing protein, at 166,251 to 167,912
_RS00710
DDA3937_RS00715: DDA3937_RS00715 - MCP four helix bundle domain-containing protein, at 168,379 to 170,061
_RS00715
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 167.405 kb on - strand, within DDA3937_RS00710 at 167.405 kb on - strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.614 kb on - strand, within DDA3937_RS00710 at 167.633 kb on + strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.645 kb on + strand, within DDA3937_RS00710 at 167.646 kb on - strand, within DDA3937_RS00710 at 167.667 kb on + strand, within DDA3937_RS00710 at 167.730 kb on - strand, within DDA3937_RS00710 at 167.746 kb on - strand at 167.825 kb on - strand at 167.825 kb on - strand at 167.828 kb on + strand at 167.829 kb on - strand at 167.829 kb on - strand at 167.846 kb on + strand at 167.846 kb on + strand at 167.883 kb on - strand at 167.885 kb on + strand at 167.886 kb on - strand at 167.900 kb on + strand at 167.904 kb on - strand at 167.932 kb on - strand at 167.992 kb on - strand at 168.040 kb on + strand at 168.040 kb on + strand at 168.041 kb on - strand at 168.132 kb on + strand at 168.137 kb on - strand at 168.168 kb on + strand at 168.187 kb on + strand at 168.375 kb on - strand at 168.489 kb on + strand at 168.495 kb on + strand at 168.495 kb on + strand at 168.496 kb on - strand at 168.511 kb on + strand at 168.511 kb on + strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.633 kb on + strand, within DDA3937_RS00715 at 168.633 kb on + strand, within DDA3937_RS00715 at 168.697 kb on + strand, within DDA3937_RS00715 at 168.697 kb on + strand, within DDA3937_RS00715 at 168.698 kb on - strand, within DDA3937_RS00715 at 168.994 kb on - strand, within DDA3937_RS00715 at 168.994 kb on - strand, within DDA3937_RS00715 at 168.994 kb on - strand, within DDA3937_RS00715 at 169.243 kb on + strand, within DDA3937_RS00715 at 169.244 kb on - strand, within DDA3937_RS00715 at 169.477 kb on + strand, within DDA3937_RS00715 at 169.477 kb on + strand, within DDA3937_RS00715 at 169.477 kb on + strand, within DDA3937_RS00715 at 169.519 kb on + strand, within DDA3937_RS00715 at 169.520 kb on - strand, within DDA3937_RS00715 at 169.612 kb on + strand, within DDA3937_RS00715 at 169.669 kb on - strand, within DDA3937_RS00715 at 169.738 kb on - strand, within DDA3937_RS00715 at 169.846 kb on - strand, within DDA3937_RS00715 at 169.846 kb on - strand, within DDA3937_RS00715 at 169.905 kb on + strand at 169.905 kb on + strand at 169.905 kb on + strand at 169.906 kb on - strand at 169.906 kb on - strand at 169.982 kb on - strand at 170.061 kb on + strand at 170.061 kb on + strand at 170.061 kb on + strand at 170.062 kb on - strand at 170.062 kb on - strand at 170.062 kb on - strand at 170.062 kb on - strand at 170.082 kb on - strand at 170.082 kb on - strand at 170.117 kb on + strand at 170.128 kb on + strand at 170.135 kb on - strand at 170.135 kb on - strand at 170.135 kb on - strand at 170.143 kb on - strand at 170.144 kb on + strand at 170.161 kb on - strand at 170.194 kb on + strand at 170.232 kb on - strand at 170.240 kb on - strand at 170.248 kb on + strand at 170.249 kb on - strand at 170.269 kb on + strand at 170.287 kb on - strand at 170.310 kb on + strand at 170.333 kb on - strand at 170.387 kb on - strand at 170.526 kb on - strand at 170.526 kb on - strand at 170.556 kb on - strand at 170.556 kb on - strand at 170.556 kb on - strand at 170.559 kb on - strand at 170.565 kb on + strand at 170.566 kb on - strand at 170.618 kb on + strand at 170.619 kb on - strand at 170.619 kb on - strand at 170.621 kb on - strand at 170.621 kb on - strand at 170.621 kb on - strand at 170.654 kb on - strand at 170.695 kb on + strand at 170.696 kb on - strand at 170.704 kb on + strand at 170.704 kb on + strand at 170.704 kb on + strand at 170.704 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.708 kb on + strand at 170.709 kb on - strand at 170.709 kb on - strand at 170.709 kb on - strand at 170.709 kb on - strand at 170.813 kb on - strand at 170.842 kb on - strand at 170.953 kb on + strand at 170.953 kb on + strand at 170.953 kb on + strand at 170.953 kb on + strand at 170.954 kb on - strand at 170.954 kb on - strand at 171.015 kb on + strand at 171.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 167,405 - DDA3937_RS00710 0.69 -0.8 167,405 - DDA3937_RS00710 0.69 +0.2 167,434 + DDA3937_RS00710 0.71 +0.3 167,434 + DDA3937_RS00710 0.71 -0.9 167,434 + DDA3937_RS00710 0.71 +0.6 167,434 + DDA3937_RS00710 0.71 +1.0 167,434 + DDA3937_RS00710 0.71 +0.4 167,556 + DDA3937_RS00710 0.79 +0.5 167,556 + DDA3937_RS00710 0.79 +0.5 167,556 + DDA3937_RS00710 0.79 +1.6 167,556 + DDA3937_RS00710 0.79 +0.9 167,557 - DDA3937_RS00710 0.79 +0.9 167,557 - DDA3937_RS00710 0.79 +0.3 167,557 - DDA3937_RS00710 0.79 +0.3 167,557 - DDA3937_RS00710 0.79 +2.0 167,557 - DDA3937_RS00710 0.79 +0.3 167,614 - DDA3937_RS00710 0.82 -0.6 167,633 + DDA3937_RS00710 0.83 +0.8 167,634 - DDA3937_RS00710 0.83 +0.2 167,634 - DDA3937_RS00710 0.83 -0.7 167,634 - DDA3937_RS00710 0.83 -0.5 167,645 + DDA3937_RS00710 0.84 -0.2 167,646 - DDA3937_RS00710 0.84 -1.2 167,667 + DDA3937_RS00710 0.85 +0.1 167,730 - DDA3937_RS00710 0.89 -2.4 167,746 - -0.1 167,825 - -0.2 167,825 - +3.2 167,828 + -0.2 167,829 - -1.2 167,829 - +0.6 167,846 + +0.9 167,846 + -1.1 167,883 - +1.9 167,885 + +0.0 167,886 - +0.9 167,900 + +1.9 167,904 - -0.2 167,932 - +0.0 167,992 - +0.7 168,040 + +0.2 168,040 + +1.1 168,041 - -1.7 168,132 + +0.3 168,137 - +0.6 168,168 + -0.8 168,187 + -0.3 168,375 - -1.6 168,489 + -1.0 168,495 + -2.0 168,495 + -0.1 168,496 - -1.2 168,511 + +0.1 168,511 + -1.5 168,512 - +0.3 168,512 - +0.2 168,512 - +0.1 168,512 - +2.6 168,512 - -0.2 168,512 - +0.0 168,633 + DDA3937_RS00715 0.15 -0.1 168,633 + DDA3937_RS00715 0.15 -0.5 168,697 + DDA3937_RS00715 0.19 -2.0 168,697 + DDA3937_RS00715 0.19 -0.7 168,698 - DDA3937_RS00715 0.19 -0.6 168,994 - DDA3937_RS00715 0.37 +0.8 168,994 - DDA3937_RS00715 0.37 -0.9 168,994 - DDA3937_RS00715 0.37 -0.9 169,243 + DDA3937_RS00715 0.51 +1.3 169,244 - DDA3937_RS00715 0.51 -2.4 169,477 + DDA3937_RS00715 0.65 -1.7 169,477 + DDA3937_RS00715 0.65 -0.5 169,477 + DDA3937_RS00715 0.65 +0.8 169,519 + DDA3937_RS00715 0.68 -1.0 169,520 - DDA3937_RS00715 0.68 -2.0 169,612 + DDA3937_RS00715 0.73 +1.0 169,669 - DDA3937_RS00715 0.77 +0.1 169,738 - DDA3937_RS00715 0.81 -2.7 169,846 - DDA3937_RS00715 0.87 -1.7 169,846 - DDA3937_RS00715 0.87 +0.6 169,905 + -0.9 169,905 + +0.0 169,905 + -0.5 169,906 - -0.1 169,906 - -1.5 169,982 - +1.2 170,061 + +0.2 170,061 + +0.1 170,061 + -0.4 170,062 - -0.2 170,062 - -2.1 170,062 - -0.5 170,062 - -1.0 170,082 - -1.5 170,082 - -1.7 170,117 + -1.2 170,128 + -0.2 170,135 - +0.0 170,135 - +0.3 170,135 - -2.2 170,143 - +0.0 170,144 + -0.1 170,161 - +1.9 170,194 + -0.1 170,232 - +1.2 170,240 - -0.3 170,248 + -1.1 170,249 - +0.4 170,269 + -0.3 170,287 - +1.0 170,310 + +0.6 170,333 - -0.5 170,387 - -0.4 170,526 - +0.0 170,526 - -0.4 170,556 - -0.5 170,556 - +0.4 170,556 - +0.2 170,559 - -0.7 170,565 + +0.0 170,566 - -2.1 170,618 + +0.3 170,619 - +1.3 170,619 - -0.7 170,621 - +2.3 170,621 - -0.7 170,621 - -0.7 170,654 - -0.9 170,695 + +0.3 170,696 - +0.3 170,704 + +0.3 170,704 + +0.3 170,704 + -0.6 170,704 + +1.3 170,708 + -0.5 170,708 + +0.5 170,708 + -0.1 170,708 + -0.8 170,708 + -0.2 170,709 - -0.8 170,709 - -0.8 170,709 - +0.6 170,709 - -2.1 170,813 - -0.1 170,842 - -0.2 170,953 + -0.9 170,953 + -1.4 170,953 + -1.4 170,953 + +0.3 170,954 - -0.1 170,954 - +0.3 171,015 + +0.3 171,028 + -0.5
Or see this region's nucleotide sequence