Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00455

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
105,494	+				-3.3
105,494	+				-1.6
105,495	-				-0.5
105,560	+				+0.1
105,580	+				-0.4
105,580	+				-0.4
105,580	+				-1.9
105,581	-				-1.2
105,581	-				-1.6
105,614	+				-2.1
105,615	-				-0.8
105,633	+				+0.6
105,634	-				-0.8
105,634	-				-2.0
105,634	-				-1.0
105,639	+				-0.4
105,679	+				-0.8
105,679	+				-1.2
105,680	-				-1.3
105,680	-				-1.2
105,680	-				-1.3
105,680	-				-1.7
105,680	-				-0.8
105,680	-				-1.0
105,686	+				-0.5
105,687	-				-2.5
105,717	-		DDA3937_RS00450	0.12	-2.8
105,796	+		DDA3937_RS00450	0.23	-1.8
105,800	+		DDA3937_RS00450	0.24	-2.4
105,800	+		DDA3937_RS00450	0.24	-0.6
105,800	+		DDA3937_RS00450	0.24	-1.2
105,800	+		DDA3937_RS00450	0.24	-1.4
105,800	+		DDA3937_RS00450	0.24	+0.1
105,800	+		DDA3937_RS00450	0.24	-0.4
105,800	+		DDA3937_RS00450	0.24	-0.4
105,800	+		DDA3937_RS00450	0.24	-0.7
105,800	+		DDA3937_RS00450	0.24	-0.8
105,800	+		DDA3937_RS00450	0.24	-1.7
105,800	+		DDA3937_RS00450	0.24	-0.0
105,800	+		DDA3937_RS00450	0.24	-0.9
105,800	+		DDA3937_RS00450	0.24	-1.3
105,801	-		DDA3937_RS00450	0.24	-1.0
105,801	-		DDA3937_RS00450	0.24	-1.8
105,801	-		DDA3937_RS00450	0.24	-0.6
105,801	-		DDA3937_RS00450	0.24	-1.5
105,801	-		DDA3937_RS00450	0.24	-0.8
105,801	-		DDA3937_RS00450	0.24	-0.8
105,801	-		DDA3937_RS00450	0.24	-0.2
105,801	-		DDA3937_RS00450	0.24	+0.5
105,867	+		DDA3937_RS00450	0.33	+0.0
105,867	+		DDA3937_RS00450	0.33	-0.7
105,867	+		DDA3937_RS00450	0.33	-1.4
105,867	+		DDA3937_RS00450	0.33	-1.8
105,867	+		DDA3937_RS00450	0.33	-0.2
105,868	-		DDA3937_RS00450	0.33	-2.3
105,868	-		DDA3937_RS00450	0.33	-0.6
105,868	-		DDA3937_RS00450	0.33	-0.5
105,868	-		DDA3937_RS00450	0.33	+1.0
105,868	-		DDA3937_RS00450	0.33	-2.1
105,868	-		DDA3937_RS00450	0.33	+0.5
105,868	-		DDA3937_RS00450	0.33	-1.1
105,871	+		DDA3937_RS00450	0.33	-0.8
105,896	+		DDA3937_RS00450	0.37	-0.7
105,896	+		DDA3937_RS00450	0.37	-0.8
105,896	+		DDA3937_RS00450	0.37	-0.4
105,896	+		DDA3937_RS00450	0.37	-1.4
105,896	+		DDA3937_RS00450	0.37	-0.6
105,896	+		DDA3937_RS00450	0.37	-1.9
105,896	+		DDA3937_RS00450	0.37	+0.1
105,896	+		DDA3937_RS00450	0.37	-0.6
105,896	+		DDA3937_RS00450	0.37	-0.2
105,896	+		DDA3937_RS00450	0.37	-1.1
105,896	+		DDA3937_RS00450	0.37	+1.2
105,896	+		DDA3937_RS00450	0.37	+0.9
105,897	-		DDA3937_RS00450	0.37	+0.9
105,897	-		DDA3937_RS00450	0.37	-2.4
105,897	-		DDA3937_RS00450	0.37	-2.0
105,935	+		DDA3937_RS00450	0.42	-2.1
105,936	-		DDA3937_RS00450	0.42	-2.0
106,060	+		DDA3937_RS00450	0.60	-0.5
106,080	+		DDA3937_RS00450	0.62	+0.0
106,081	-		DDA3937_RS00450	0.63	-0.7
106,224	-		DDA3937_RS00450	0.82	-0.2
106,232	+		DDA3937_RS00450	0.83	-2.1
106,232	+		DDA3937_RS00450	0.83	-1.1
106,233	-		DDA3937_RS00450	0.84	-0.9
106,259	-		DDA3937_RS00450	0.87	-0.6
106,295	+				-1.1
106,295	+				-0.9
106,349	+				+0.1
106,350	-				+0.1
106,400	+				-1.2
106,400	+				+0.3
106,439	+				+0.7
106,440	-				-0.5
106,458	+				-0.1
106,458	+				-0.1
106,458	+				-0.2
106,459	-				+0.5
106,635	+		DDA3937_RS00455	0.13	+0.9
106,636	-		DDA3937_RS00455	0.13	-0.2
106,636	-		DDA3937_RS00455	0.13	-1.0
106,647	+		DDA3937_RS00455	0.14	+1.5
106,648	-		DDA3937_RS00455	0.14	-0.5
106,648	-		DDA3937_RS00455	0.14	-1.0
106,710	+		DDA3937_RS00455	0.19	+0.3
106,724	+		DDA3937_RS00455	0.20	-0.6
106,752	+		DDA3937_RS00455	0.22	+0.9
106,752	+		DDA3937_RS00455	0.22	-1.4
106,752	+		DDA3937_RS00455	0.22	-1.2
106,752	+		DDA3937_RS00455	0.22	-0.3
106,752	+		DDA3937_RS00455	0.22	-0.8
106,753	-		DDA3937_RS00455	0.22	+0.2
106,753	-		DDA3937_RS00455	0.22	-0.1
106,753	-		DDA3937_RS00455	0.22	-0.1
106,809	+		DDA3937_RS00455	0.26	-0.2
106,810	-		DDA3937_RS00455	0.26	+0.3
106,810	-		DDA3937_RS00455	0.26	+1.0
106,904	-		DDA3937_RS00455	0.33	-0.7
107,144	+		DDA3937_RS00455	0.51	+0.2
107,157	+		DDA3937_RS00455	0.52	+0.1
107,158	-		DDA3937_RS00455	0.52	+0.1
107,158	-		DDA3937_RS00455	0.52	+0.1
107,158	-		DDA3937_RS00455	0.52	+1.7
107,158	-		DDA3937_RS00455	0.52	-0.7
107,190	+		DDA3937_RS00455	0.55	-0.4
107,190	+		DDA3937_RS00455	0.55	-0.8
107,268	+		DDA3937_RS00455	0.60	-0.2
107,268	+		DDA3937_RS00455	0.60	-0.0
107,268	+		DDA3937_RS00455	0.60	-1.3
107,268	+		DDA3937_RS00455	0.60	+0.6
107,268	+		DDA3937_RS00455	0.60	-0.4
107,269	-				+1.7
107,269	-		DDA3937_RS00455	0.60	+0.0
107,269	-		DDA3937_RS00455	0.60	-0.9
107,277	+		DDA3937_RS00455	0.61	-1.5
107,277	+		DDA3937_RS00455	0.61	+0.3
107,278	-		DDA3937_RS00455	0.61	-0.8
107,331	-		DDA3937_RS00455	0.65	-0.2
107,396	-		DDA3937_RS00455	0.70	+0.5
107,406	-		DDA3937_RS00455	0.71	+0.0
107,496	+		DDA3937_RS00455	0.77	+2.2
107,577	+		DDA3937_RS00455	0.83	-0.2
107,577	+		DDA3937_RS00455	0.83	+2.7
107,577	+		DDA3937_RS00455	0.83	-0.9
107,578	-		DDA3937_RS00455	0.83	+0.4
107,578	-		DDA3937_RS00455	0.83	-1.0
107,603	-		DDA3937_RS00455	0.85	-2.7
107,605	+		DDA3937_RS00455	0.85	-0.1
107,606	-		DDA3937_RS00455	0.85	+1.4
107,606	-		DDA3937_RS00455	0.85	-1.9
107,606	-		DDA3937_RS00455	0.85	+0.2
107,606	-		DDA3937_RS00455	0.85	-1.8
107,606	-		DDA3937_RS00455	0.85	+0.5
107,649	+		DDA3937_RS00455	0.89	+0.6
107,723	+				+0.5
107,724	-				-1.2
107,802	-				-1.1
107,803	+				-0.1
107,803	+				-0.0
107,803	+				-0.1
107,804	-				-0.7
107,804	-				-0.4
107,817	+				-0.0
107,818	-				-0.3
107,825	+				+0.5
107,836	+				+0.3
107,836	+				-0.5
107,836	+				-0.9
107,837	-				+1.2
107,872	+				-1.0
107,873	-				-0.4
107,892	-				-0.7
107,912	+		DDA3937_RS23380	0.11	+1.8
107,912	+		DDA3937_RS23380	0.11	-0.2
107,912	+		DDA3937_RS23380	0.11	-0.3
107,912	+		DDA3937_RS23380	0.11	-0.6
107,912	+		DDA3937_RS23380	0.11	-0.4
107,912	+		DDA3937_RS23380	0.11	+0.1
107,912	+				+2.1
107,912	+		DDA3937_RS23380	0.11	+0.1
107,912	+		DDA3937_RS23380	0.11	+0.4
107,912	+		DDA3937_RS23380	0.11	+2.1
107,913	-		DDA3937_RS23380	0.12	-0.8
107,913	-		DDA3937_RS23380	0.12	+0.0
107,913	-		DDA3937_RS23380	0.12	+0.3
107,913	-		DDA3937_RS23380	0.12	-1.2
107,913	-		DDA3937_RS23380	0.12	-0.6
107,913	-		DDA3937_RS23380	0.12	+0.9
107,913	-				+1.3
107,913	-		DDA3937_RS23380	0.12	-0.5
107,913	-		DDA3937_RS23380	0.12	-0.1
107,913	-		DDA3937_RS23380	0.12	-0.4
107,913	-		DDA3937_RS23380	0.12	+1.9
107,914	+		DDA3937_RS23380	0.13	-0.8
107,914	+		DDA3937_RS23380	0.13	+0.8
107,915	-		DDA3937_RS23380	0.13	-0.1
107,915	-		DDA3937_RS23380	0.13	-0.6
107,932	-		DDA3937_RS23380	0.23	-1.1
107,944	+		DDA3937_RS23380	0.30	+4.2
108,011	-		DDA3937_RS23380	0.68	+0.4
108,019	+		DDA3937_RS23380	0.73	-0.4
108,019	+		DDA3937_RS23380	0.73	-0.1
108,020	-		DDA3937_RS23380	0.74	+0.2
108,020	-		DDA3937_RS23380	0.74	-0.5
108,035	+		DDA3937_RS23380	0.82	-0.5
108,045	-		DDA3937_RS23380	0.88	-0.5
108,097	+				+0.0
108,101	+				-0.3
108,156	+				-0.4
108,161	-				+0.2
108,207	+				+0.0
108,233	+				-0.5
108,234	-				-0.2
108,235	+				+2.9
108,235	+				-0.6
108,238	-				+0.3
108,342	+				-0.2
108,342	+				+0.4
108,342	+				+0.3
108,343	-				-0.8
108,372	+				+0.3
108,372	+				+1.3
108,398	+				-2.5
108,401	-				-1.2
108,401	-				+0.3
108,425	-				+0.0
108,452	-				-0.3
108,457	+				+0.8
108,457	+				+0.2
108,457	+				-0.8
108,457	+				-0.2
108,457	+				-0.7
108,457	+				-1.9
108,457	+				-1.1
108,457	+				-0.3
108,458	-				-0.4
108,458	-				-0.6
108,458	-				-0.6
108,458	-				+1.1
108,458	-				+0.1
108,458	-				-0.2
108,458	-				-1.3
108,485	+				-0.0
108,486	-				-0.8
108,521	-				-1.2
108,530	+				-0.1
108,530	+				-0.3
108,530	+				-1.2
108,530	+				-0.4
108,531	-				-1.5
108,566	+				-0.4
108,567	-				-0.8
108,567	-				-1.6
108,576	+				-0.9
108,576	+				+0.1
108,577	-				-0.6
108,577	-				+0.1
108,607	+				-0.2
108,607	+				-0.6
108,607	+				-0.5
108,607	+				+0.4
108,608	-				-0.8
108,639	+				-0.2
108,661	+				+1.2
108,672	+				+0.4
108,673	-				-0.7
108,673	-				-0.5
108,674	+				+1.7
108,704	-				-0.3
108,718	+				-0.5
108,718	+				+3.6
108,719	-				-0.7
108,719	-				-0.8
108,719	-				-0.4
108,719	-				+0.2
108,782	-				-3.3
108,782	-				-1.5
108,782	-				+0.1
108,794	+				+1.3
108,794	+				-0.4