Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00140 and DDA3937_RS00145 are separated by 222 nucleotides DDA3937_RS00145 and DDA3937_RS00150 are separated by 7 nucleotides DDA3937_RS00150 and DDA3937_RS00155 are separated by 33 nucleotides
DDA3937_RS00140: DDA3937_RS00140 - ribosome-dependent GTPase TypA, at 32,852 to 34,675
_RS00140
DDA3937_RS00145: DDA3937_RS00145 - glucose-1-phosphatase, at 34,898 to 35,509
_RS00145
DDA3937_RS00150: DDA3937_RS00150 - D-tyrosyl-tRNA(Tyr) deacylase, at 35,517 to 35,954
_RS00150
DDA3937_RS00155: DDA3937_RS00155 - fatty acid biosynthesis protein FabY, at 35,988 to 36,929
_RS00155
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 34.161 kb on + strand, within DDA3937_RS00140 at 34.161 kb on + strand, within DDA3937_RS00140 at 34.162 kb on - strand, within DDA3937_RS00140 at 34.172 kb on + strand, within DDA3937_RS00140 at 34.172 kb on + strand, within DDA3937_RS00140 at 34.173 kb on - strand, within DDA3937_RS00140 at 34.265 kb on + strand, within DDA3937_RS00140 at 34.347 kb on - strand, within DDA3937_RS00140 at 34.347 kb on - strand, within DDA3937_RS00140 at 34.347 kb on - strand, within DDA3937_RS00140 at 34.406 kb on + strand, within DDA3937_RS00140 at 34.406 kb on + strand, within DDA3937_RS00140 at 34.407 kb on - strand, within DDA3937_RS00140 at 34.407 kb on - strand at 34.426 kb on + strand, within DDA3937_RS00140 at 34.484 kb on - strand, within DDA3937_RS00140 at 34.484 kb on - strand, within DDA3937_RS00140 at 34.518 kb on + strand at 34.615 kb on + strand at 34.673 kb on + strand at 34.673 kb on + strand at 34.674 kb on - strand at 34.681 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.707 kb on + strand at 34.708 kb on - strand at 34.712 kb on + strand at 34.779 kb on - strand at 34.815 kb on + strand at 34.816 kb on - strand at 34.816 kb on - strand at 34.816 kb on - strand at 34.816 kb on - strand at 34.818 kb on + strand at 34.818 kb on + strand at 34.818 kb on + strand at 34.818 kb on + strand at 34.819 kb on - strand at 34.819 kb on - strand at 34.862 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.905 kb on - strand at 34.905 kb on - strand at 34.906 kb on + strand at 34.906 kb on + strand at 34.906 kb on + strand at 34.907 kb on - strand at 34.907 kb on - strand at 34.907 kb on - strand at 34.917 kb on + strand at 34.917 kb on + strand at 34.918 kb on - strand at 34.921 kb on + strand at 34.921 kb on + strand at 34.922 kb on - strand at 34.922 kb on - strand at 34.934 kb on + strand at 35.098 kb on + strand, within DDA3937_RS00145 at 35.098 kb on + strand, within DDA3937_RS00145 at 35.099 kb on - strand, within DDA3937_RS00145 at 35.099 kb on - strand, within DDA3937_RS00145 at 35.145 kb on + strand, within DDA3937_RS00145 at 35.146 kb on - strand, within DDA3937_RS00145 at 35.146 kb on - strand, within DDA3937_RS00145 at 35.151 kb on + strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.171 kb on - strand, within DDA3937_RS00145 at 35.208 kb on + strand, within DDA3937_RS00145 at 35.209 kb on - strand, within DDA3937_RS00145 at 35.209 kb on - strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.221 kb on + strand, within DDA3937_RS00145 at 35.221 kb on + strand, within DDA3937_RS00145 at 35.291 kb on + strand, within DDA3937_RS00145 at 35.336 kb on + strand, within DDA3937_RS00145 at 35.337 kb on - strand, within DDA3937_RS00145 at 35.337 kb on - strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.441 kb on - strand, within DDA3937_RS00145 at 35.495 kb on - strand at 35.495 kb on - strand at 35.507 kb on + strand at 35.508 kb on - strand at 35.516 kb on + strand at 35.516 kb on + strand at 35.517 kb on - strand at 35.527 kb on + strand at 35.561 kb on - strand, within DDA3937_RS00150 at 35.572 kb on + strand, within DDA3937_RS00150 at 35.602 kb on + strand, within DDA3937_RS00150 at 35.602 kb on + strand, within DDA3937_RS00150 at 35.615 kb on - strand, within DDA3937_RS00150 at 35.753 kb on + strand, within DDA3937_RS00150 at 35.832 kb on + strand, within DDA3937_RS00150 at 35.832 kb on + strand, within DDA3937_RS00150 at 35.833 kb on - strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.908 kb on + strand, within DDA3937_RS00150 at 35.908 kb on + strand at 35.908 kb on + strand, within DDA3937_RS00150 at 35.908 kb on + strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.917 kb on + strand at 35.952 kb on + strand at 35.953 kb on - strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.988 kb on - strand at 35.991 kb on + strand at 35.991 kb on + strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.994 kb on + strand at 35.994 kb on + strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.063 kb on - strand at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.174 kb on - strand, within DDA3937_RS00155 at 36.176 kb on + strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.227 kb on - strand, within DDA3937_RS00155 at 36.308 kb on + strand, within DDA3937_RS00155 at 36.309 kb on - strand, within DDA3937_RS00155 at 36.413 kb on + strand, within DDA3937_RS00155 at 36.414 kb on - strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.484 kb on - strand, within DDA3937_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 34,161 + DDA3937_RS00140 0.72 -1.3 34,161 + DDA3937_RS00140 0.72 -1.0 34,162 - DDA3937_RS00140 0.72 -1.0 34,172 + DDA3937_RS00140 0.72 +1.9 34,172 + DDA3937_RS00140 0.72 -0.5 34,173 - DDA3937_RS00140 0.72 -1.8 34,265 + DDA3937_RS00140 0.77 +2.3 34,347 - DDA3937_RS00140 0.82 -2.7 34,347 - DDA3937_RS00140 0.82 -1.7 34,347 - DDA3937_RS00140 0.82 -0.5 34,406 + DDA3937_RS00140 0.85 -1.5 34,406 + DDA3937_RS00140 0.85 -0.7 34,407 - DDA3937_RS00140 0.85 -0.7 34,407 - -1.2 34,426 + DDA3937_RS00140 0.86 +1.3 34,484 - DDA3937_RS00140 0.89 -3.2 34,484 - DDA3937_RS00140 0.89 -1.0 34,518 + -1.2 34,615 + +1.3 34,673 + -0.9 34,673 + -0.6 34,674 - -0.5 34,681 + -0.5 34,693 + +0.3 34,693 + -0.4 34,693 + -1.0 34,693 + +0.6 34,693 + -3.4 34,693 + -0.3 34,693 + -1.6 34,693 + +0.3 34,694 - +1.8 34,694 - -0.8 34,694 - +0.8 34,694 - -0.7 34,694 - -0.1 34,694 - +0.0 34,694 - -1.7 34,694 - -0.2 34,694 - +1.0 34,694 - +0.4 34,694 - -0.5 34,694 - -1.8 34,694 - -0.1 34,694 - -0.0 34,694 - +0.8 34,707 + -0.2 34,708 - -0.4 34,712 + -1.4 34,779 - -1.1 34,815 + +1.1 34,816 - -1.2 34,816 - -1.0 34,816 - +2.2 34,816 - -2.6 34,818 + -2.1 34,818 + -1.8 34,818 + -1.1 34,818 + -0.7 34,819 - -0.6 34,819 - -0.2 34,862 + -0.7 34,904 + +1.8 34,904 + -1.5 34,904 + +1.1 34,904 + -0.1 34,904 + +0.5 34,904 + +2.3 34,905 - -0.6 34,905 - -0.5 34,906 + -0.4 34,906 + +0.1 34,906 + -0.4 34,907 - +1.6 34,907 - -0.2 34,907 - -0.3 34,917 + -1.1 34,917 + +0.4 34,918 - -0.7 34,921 + -1.5 34,921 + +0.5 34,922 - +0.6 34,922 - +0.4 34,934 + +0.2 35,098 + DDA3937_RS00145 0.33 +0.8 35,098 + DDA3937_RS00145 0.33 -0.1 35,099 - DDA3937_RS00145 0.33 +0.6 35,099 - DDA3937_RS00145 0.33 +0.1 35,145 + DDA3937_RS00145 0.40 +0.4 35,146 - DDA3937_RS00145 0.41 -0.7 35,146 - DDA3937_RS00145 0.41 +0.3 35,151 + DDA3937_RS00145 0.41 -1.4 35,152 - DDA3937_RS00145 0.42 -0.9 35,152 - DDA3937_RS00145 0.42 +1.6 35,152 - DDA3937_RS00145 0.42 -0.5 35,152 - DDA3937_RS00145 0.42 -0.7 35,152 - DDA3937_RS00145 0.42 -0.4 35,171 - DDA3937_RS00145 0.45 +0.9 35,208 + DDA3937_RS00145 0.51 -0.2 35,209 - DDA3937_RS00145 0.51 -0.0 35,209 - DDA3937_RS00145 0.51 -0.2 35,211 + DDA3937_RS00145 0.51 +1.7 35,211 + DDA3937_RS00145 0.51 -1.5 35,211 + DDA3937_RS00145 0.51 -0.5 35,211 + DDA3937_RS00145 0.51 -0.3 35,212 - DDA3937_RS00145 0.51 -0.4 35,212 - DDA3937_RS00145 0.51 -0.2 35,212 - DDA3937_RS00145 0.51 -0.2 35,212 - DDA3937_RS00145 0.51 -0.0 35,212 - DDA3937_RS00145 0.51 +0.1 35,212 - DDA3937_RS00145 0.51 -0.5 35,221 + DDA3937_RS00145 0.53 -0.1 35,221 + DDA3937_RS00145 0.53 -0.4 35,291 + DDA3937_RS00145 0.64 +0.6 35,336 + DDA3937_RS00145 0.72 +2.1 35,337 - DDA3937_RS00145 0.72 -0.7 35,337 - DDA3937_RS00145 0.72 -0.1 35,440 + DDA3937_RS00145 0.89 -0.5 35,440 + DDA3937_RS00145 0.89 +1.0 35,440 + DDA3937_RS00145 0.89 +0.1 35,441 - DDA3937_RS00145 0.89 +3.7 35,495 - +1.0 35,495 - +0.3 35,507 + -0.5 35,508 - -0.4 35,516 + +0.0 35,516 + -0.8 35,517 - -0.7 35,527 + -0.6 35,561 - DDA3937_RS00150 0.10 +0.3 35,572 + DDA3937_RS00150 0.13 -0.3 35,602 + DDA3937_RS00150 0.19 -0.2 35,602 + DDA3937_RS00150 0.19 -0.4 35,615 - DDA3937_RS00150 0.22 -0.3 35,753 + DDA3937_RS00150 0.54 -0.1 35,832 + DDA3937_RS00150 0.72 -0.0 35,832 + DDA3937_RS00150 0.72 +0.3 35,833 - DDA3937_RS00150 0.72 -0.8 35,838 + DDA3937_RS00150 0.73 -2.9 35,838 + DDA3937_RS00150 0.73 -1.0 35,838 + DDA3937_RS00150 0.73 -1.1 35,838 + DDA3937_RS00150 0.73 -0.1 35,908 + DDA3937_RS00150 0.89 +0.7 35,908 + -1.5 35,908 + DDA3937_RS00150 0.89 -0.3 35,908 + DDA3937_RS00150 0.89 +0.5 35,909 - DDA3937_RS00150 0.89 -0.2 35,909 - DDA3937_RS00150 0.89 +0.1 35,909 - DDA3937_RS00150 0.89 -0.7 35,909 - DDA3937_RS00150 0.89 -0.1 35,909 - DDA3937_RS00150 0.89 -2.1 35,917 + -0.2 35,952 + -1.1 35,953 - +0.2 35,963 + +0.0 35,963 + +0.8 35,963 + -2.5 35,963 + +0.6 35,963 + -0.4 35,963 + +0.2 35,964 - -0.2 35,964 - -1.4 35,964 - +0.9 35,964 - +0.5 35,964 - -1.5 35,964 - -0.9 35,964 - +0.3 35,964 - +2.5 35,987 + +0.1 35,987 + +0.5 35,987 + +0.3 35,987 + +0.8 35,988 - -0.1 35,991 + +0.3 35,991 + -2.2 35,992 - -0.1 35,992 - +0.3 35,992 - -0.2 35,992 - +0.5 35,992 - +0.6 35,994 + +1.2 35,994 + -0.2 35,995 - -1.5 35,995 - -1.0 35,995 - -1.3 35,995 - -1.2 35,995 - -1.0 36,033 + -1.5 36,033 + -0.1 36,033 + +1.3 36,033 + +1.2 36,033 + +1.1 36,033 + -1.5 36,034 - +0.8 36,034 - +0.9 36,034 - -0.5 36,034 - -0.6 36,063 - +0.3 36,102 + DDA3937_RS00155 0.12 -0.5 36,102 + DDA3937_RS00155 0.12 -1.7 36,102 + DDA3937_RS00155 0.12 -0.7 36,174 - DDA3937_RS00155 0.20 -1.1 36,176 + DDA3937_RS00155 0.20 +1.2 36,177 - DDA3937_RS00155 0.20 +0.6 36,177 - DDA3937_RS00155 0.20 -1.2 36,177 - DDA3937_RS00155 0.20 +0.2 36,227 - DDA3937_RS00155 0.25 -2.2 36,308 + DDA3937_RS00155 0.34 -0.5 36,309 - DDA3937_RS00155 0.34 +0.1 36,413 + DDA3937_RS00155 0.45 -1.5 36,414 - DDA3937_RS00155 0.45 +0.3 36,483 + DDA3937_RS00155 0.53 -0.9 36,483 + DDA3937_RS00155 0.53 -1.0 36,483 + DDA3937_RS00155 0.53 +0.1 36,483 + DDA3937_RS00155 0.53 +0.2 36,484 - DDA3937_RS00155 0.53 +4.2
Or see this region's nucleotide sequence