Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00055

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
10,535	+				-1.0
10,535	+				-1.0
10,536	-				-0.9
10,539	-				+0.3
10,539	-				-1.2
10,539	-				-1.0
10,549	+				-0.6
10,549	+				-0.8
10,549	+				-0.3
10,550	-				+0.3
10,550	-				+1.1
10,550	-				+1.6
10,550	-				-0.5
10,550	-				-1.1
10,550	-				-0.1
10,550	-				-1.5
10,550	-				-0.4
10,550	-				-0.4
10,552	+				-0.4
10,552	+				-0.2
10,552	+				-0.2
10,553	-				+3.9
10,553	-				+3.6
10,580	+				-2.1
10,581	-				-2.0
10,624	-				-0.0
10,624	-				+1.3
10,624	-				-1.8
10,651	+				-2.1
10,651	+				-1.0
10,652	-				-0.4
10,652	-				+0.6
10,652	-				-0.2
10,652	-				+0.7
10,706	+		DDA3937_RS00050	0.11	+0.2
10,706	+		DDA3937_RS00050	0.11	+0.3
10,706	+		DDA3937_RS00050	0.11	-1.4
10,706	+		DDA3937_RS00050	0.11	-1.2
10,707	-		DDA3937_RS00050	0.11	-0.8
10,707	-		DDA3937_RS00050	0.11	-0.7
10,707	-		DDA3937_RS00050	0.11	+0.1
10,707	-		DDA3937_RS00050	0.11	+0.3
10,707	-		DDA3937_RS00050	0.11	-1.0
10,707	-		DDA3937_RS00050	0.11	+0.4
10,707	-		DDA3937_RS00050	0.11	-0.7
10,707	-		DDA3937_RS00050	0.11	-0.2
10,781	-		DDA3937_RS00050	0.19	+0.0
10,816	+		DDA3937_RS00050	0.23	+0.9
10,817	-		DDA3937_RS00050	0.23	+0.2
10,834	+		DDA3937_RS00050	0.25	-0.3
10,970	+		DDA3937_RS00050	0.39	-0.8
10,971	-		DDA3937_RS00050	0.40	-0.5
10,971	-		DDA3937_RS00050	0.40	+0.5
10,971	-		DDA3937_RS00050	0.40	+0.6
10,996	+		DDA3937_RS00050	0.42	+3.1
11,242	+		DDA3937_RS00050	0.69	-2.2
11,243	-		DDA3937_RS00050	0.69	-0.0
11,243	-		DDA3937_RS00050	0.69	+0.3
11,243	-		DDA3937_RS00050	0.69	+0.4
11,260	-		DDA3937_RS00050	0.71	-1.5
11,260	-		DDA3937_RS00050	0.71	+2.6
11,266	+		DDA3937_RS00050	0.71	-0.2
11,266	+		DDA3937_RS00050	0.71	-2.5
11,266	+		DDA3937_RS00050	0.71	-1.1
11,266	+		DDA3937_RS00050	0.71	-0.3
11,266	+		DDA3937_RS00050	0.71	-2.4
11,267	-		DDA3937_RS00050	0.72	-0.2
11,267	-		DDA3937_RS00050	0.72	-1.0
11,267	-		DDA3937_RS00050	0.72	+2.9
11,267	-		DDA3937_RS00050	0.72	-1.7
11,267	-		DDA3937_RS00050	0.72	+0.8
11,267	-		DDA3937_RS00050	0.72	-2.4
11,267	-		DDA3937_RS00050	0.72	-0.0
11,267	-		DDA3937_RS00050	0.72	+2.6
11,267	-		DDA3937_RS00050	0.72	-1.1
11,317	+		DDA3937_RS00050	0.77	-0.8
11,317	+		DDA3937_RS00050	0.77	-1.0
11,317	+		DDA3937_RS00050	0.77	-0.8
11,317	+		DDA3937_RS00050	0.77	-1.8
11,318	-		DDA3937_RS00050	0.77	+0.1
11,318	-		DDA3937_RS00050	0.77	-0.2
11,318	-		DDA3937_RS00050	0.77	-1.0
11,318	-		DDA3937_RS00050	0.77	-1.7
11,318	-		DDA3937_RS00050	0.77	-0.9
11,528	+				+1.2
11,528	+				+0.9
11,528	+				+1.3
11,529	-				+0.7
11,529	-				+1.9
11,529	-				+0.9
11,596	+				+3.8
11,596	+				+2.0
11,596	+				-0.6
11,597	-				+2.3
11,597	-				+2.8
11,605	+				+0.5
11,606	-				+0.9
11,606	-				+0.5
11,606	-				+2.3
11,612	+				+0.1
11,612	+				+1.5
11,612	+				+1.2
11,612	+				+5.7
11,613	-				+2.0
11,613	-				+1.0
11,666	+		DDA3937_RS00055	0.13	+1.5
11,666	+		DDA3937_RS00055	0.13	+0.9
11,667	-		DDA3937_RS00055	0.13	+2.3
11,667	-		DDA3937_RS00055	0.13	+0.4
11,689	+		DDA3937_RS00055	0.15	+0.9
11,740	+		DDA3937_RS00055	0.20	+0.9
11,740	+		DDA3937_RS00055	0.20	-0.2
11,740	+		DDA3937_RS00055	0.20	+2.0
11,741	-		DDA3937_RS00055	0.21	-0.1
11,753	+		DDA3937_RS00055	0.22	+0.8
11,753	+		DDA3937_RS00055	0.22	+0.6
11,753	+		DDA3937_RS00055	0.22	+0.9
11,753	+		DDA3937_RS00055	0.22	+1.0
11,753	+		DDA3937_RS00055	0.22	+0.3
11,754	-		DDA3937_RS00055	0.22	+0.5
11,789	+		DDA3937_RS00055	0.25	+0.2
11,789	+		DDA3937_RS00055	0.25	+0.9
11,789	+		DDA3937_RS00055	0.25	+1.6
11,802	-		DDA3937_RS00055	0.27	+1.3
11,808	+		DDA3937_RS00055	0.27	+1.1
11,809	-		DDA3937_RS00055	0.27	+1.0
11,809	-		DDA3937_RS00055	0.27	+0.2
11,809	-		DDA3937_RS00055	0.27	+1.1
11,809	-		DDA3937_RS00055	0.27	+0.3
11,809	-		DDA3937_RS00055	0.27	-1.2
11,809	-		DDA3937_RS00055	0.27	+1.9
11,809	-		DDA3937_RS00055	0.27	+0.5
11,821	+				+2.1
11,821	+		DDA3937_RS00055	0.29	+0.2
11,821	+		DDA3937_RS00055	0.29	+1.6
11,865	+		DDA3937_RS00055	0.33	+0.9
11,865	+		DDA3937_RS00055	0.33	+2.3
11,865	+		DDA3937_RS00055	0.33	+2.3
11,865	+		DDA3937_RS00055	0.33	+2.2
11,865	+		DDA3937_RS00055	0.33	+1.4
11,865	+		DDA3937_RS00055	0.33	+1.1
11,866	-		DDA3937_RS00055	0.33	+1.7
11,866	-		DDA3937_RS00055	0.33	+1.3
11,866	-		DDA3937_RS00055	0.33	+1.8
11,866	-		DDA3937_RS00055	0.33	+0.7
11,866	-		DDA3937_RS00055	0.33	+1.2
11,902	+		DDA3937_RS00055	0.37	+1.3
11,902	+		DDA3937_RS00055	0.37	+3.7
11,902	+		DDA3937_RS00055	0.37	+0.4
11,903	-		DDA3937_RS00055	0.37	+0.3
11,903	-		DDA3937_RS00055	0.37	-0.7
11,914	+		DDA3937_RS00055	0.38	+1.0
11,914	+		DDA3937_RS00055	0.38	+1.6
11,914	+		DDA3937_RS00055	0.38	+1.8
11,914	+		DDA3937_RS00055	0.38	+1.1
11,915	-		DDA3937_RS00055	0.38	+2.9
11,915	-		DDA3937_RS00055	0.38	+0.6
11,932	+		DDA3937_RS00055	0.40	+1.0
11,932	+		DDA3937_RS00055	0.40	+1.0
11,932	+		DDA3937_RS00055	0.40	+1.3
11,933	-		DDA3937_RS00055	0.40	+1.3
11,933	-		DDA3937_RS00055	0.40	+0.2
11,933	-		DDA3937_RS00055	0.40	+2.9
11,933	-		DDA3937_RS00055	0.40	+0.1
11,950	+		DDA3937_RS00055	0.41	-0.0
11,950	+		DDA3937_RS00055	0.41	+1.7
11,950	+		DDA3937_RS00055	0.41	+2.2
11,950	+		DDA3937_RS00055	0.41	+1.0
11,950	+		DDA3937_RS00055	0.41	+1.7
11,950	+		DDA3937_RS00055	0.41	+0.5
11,950	+		DDA3937_RS00055	0.41	+0.4
11,950	+		DDA3937_RS00055	0.41	-1.2
11,950	+		DDA3937_RS00055	0.41	-0.3
11,950	+		DDA3937_RS00055	0.41	-0.2
11,950	+		DDA3937_RS00055	0.41	+1.0
11,950	+		DDA3937_RS00055	0.41	+1.1
11,951	-		DDA3937_RS00055	0.41	-0.5
11,951	-		DDA3937_RS00055	0.41	+1.1
11,951	-		DDA3937_RS00055	0.41	+0.1
11,951	-		DDA3937_RS00055	0.41	+1.3
11,951	-		DDA3937_RS00055	0.41	+1.3
11,951	-		DDA3937_RS00055	0.41	+1.2
11,951	-		DDA3937_RS00055	0.41	+1.1
11,951	-		DDA3937_RS00055	0.41	+0.7
11,951	-		DDA3937_RS00055	0.41	+2.2
11,951	-		DDA3937_RS00055	0.41	+0.6
11,951	-		DDA3937_RS00055	0.41	+0.6
12,001	+		DDA3937_RS00055	0.46	+1.2
12,002	-		DDA3937_RS00055	0.47	+2.7
12,002	-		DDA3937_RS00055	0.47	+0.8
12,044	+		DDA3937_RS00055	0.51	+1.1
12,044	+		DDA3937_RS00055	0.51	+1.3
12,045	-		DDA3937_RS00055	0.51	+1.9
12,079	+		DDA3937_RS00055	0.54	-0.1
12,079	+		DDA3937_RS00055	0.54	+1.0
12,080	-		DDA3937_RS00055	0.54	+1.5
12,133	+		DDA3937_RS00055	0.60	+5.6
12,134	-		DDA3937_RS00055	0.60	-1.7
12,143	+		DDA3937_RS00055	0.61	+1.6
12,143	+		DDA3937_RS00055	0.61	+1.4
12,143	+		DDA3937_RS00055	0.61	-0.2
12,143	+		DDA3937_RS00055	0.61	+0.8
12,143	+		DDA3937_RS00055	0.61	+0.9
12,143	+		DDA3937_RS00055	0.61	+0.2
12,143	+		DDA3937_RS00055	0.61	+0.9
12,143	+		DDA3937_RS00055	0.61	+1.6
12,143	+		DDA3937_RS00055	0.61	+0.3
12,144	-		DDA3937_RS00055	0.61	+2.2
12,144	-		DDA3937_RS00055	0.61	+1.6
12,144	-		DDA3937_RS00055	0.61	+0.7
12,144	-		DDA3937_RS00055	0.61	-1.2
12,144	-		DDA3937_RS00055	0.61	+1.2
12,144	-		DDA3937_RS00055	0.61	+1.0
12,144	-		DDA3937_RS00055	0.61	+1.8
12,144	-		DDA3937_RS00055	0.61	+1.5
12,144	-		DDA3937_RS00055	0.61	+1.7
12,144	-		DDA3937_RS00055	0.61	+1.5
12,144	-		DDA3937_RS00055	0.61	+2.0
12,144	-		DDA3937_RS00055	0.61	+0.1
12,174	-		DDA3937_RS00055	0.64	+2.2
12,263	-		DDA3937_RS00055	0.73	+2.5
12,269	-		DDA3937_RS00055	0.73	+1.3
12,277	+		DDA3937_RS00055	0.74	+1.3
12,278	-		DDA3937_RS00055	0.74	+0.5
12,294	-		DDA3937_RS00055	0.76	+0.4
12,322	+		DDA3937_RS00055	0.78	-1.0
12,322	+		DDA3937_RS00055	0.78	+0.7
12,322	+		DDA3937_RS00055	0.78	-0.1
12,322	+		DDA3937_RS00055	0.78	+1.1
12,322	+		DDA3937_RS00055	0.78	+1.0
12,322	+		DDA3937_RS00055	0.78	+1.5
12,334	+		DDA3937_RS00055	0.80	+2.1
12,350	+		DDA3937_RS00055	0.81	+0.8
12,374	+				-0.7
12,374	+		DDA3937_RS00055	0.84	+2.4
12,374	+		DDA3937_RS00055	0.84	+1.3
12,374	+		DDA3937_RS00055	0.84	+0.8
12,375	-		DDA3937_RS00055	0.84	-2.1
12,409	+		DDA3937_RS00055	0.87	+0.8
12,410	-		DDA3937_RS00055	0.87	+0.7
12,410	-		DDA3937_RS00055	0.87	-0.5
12,410	-		DDA3937_RS00055	0.87	+1.5
12,439	+				+2.2
12,440	-				+0.7
12,483	+				-2.1
12,483	+				+0.6
12,483	+				-0.1
12,483	+				+1.9
12,483	+				+2.0
12,483	+				-0.1
12,483	+				+0.2
12,484	-				+0.8
12,484	-				+0.5
12,484	-				+0.9
12,484	-				+1.1
12,484	-				+1.2
12,504	+				+2.2
12,504	+				+0.6
12,504	+				+0.3
12,537	-				-0.2
12,571	-				+0.7
12,598	+				-1.5
12,598	+				+0.7
12,598	+				+0.3
12,598	+				+1.7
12,599	-				+0.9
12,599	-				-1.5
12,599	-				-1.7
12,599	-				-1.0
12,681	-				+0.7
12,681	-				-1.8
12,681	-				+0.4
12,782	-				-0.7