Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00025 and DDA3937_RS00030 are separated by 396 nucleotides DDA3937_RS00030 and DDA3937_RS00035 are separated by 7 nucleotides
DDA3937_RS00025: DDA3937_RS00025 - low affinity potassium transporter Kup, at 4,431 to 6,299
_RS00025
DDA3937_RS00030: DDA3937_RS00030 - D-ribose pyranase, at 6,696 to 7,115
_RS00030
DDA3937_RS00035: DDA3937_RS00035 - ribose ABC transporter ATP-binding protein RbsA, at 7,123 to 8,628
_RS00035
Position (kb) 6
7
8 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5.732 kb on + strand, within DDA3937_RS00025 at 5.732 kb on + strand, within DDA3937_RS00025 at 5.733 kb on - strand, within DDA3937_RS00025 at 5.733 kb on - strand, within DDA3937_RS00025 at 5.733 kb on - strand, within DDA3937_RS00025 at 5.733 kb on - strand, within DDA3937_RS00025 at 5.816 kb on + strand, within DDA3937_RS00025 at 5.816 kb on + strand, within DDA3937_RS00025 at 5.816 kb on + strand, within DDA3937_RS00025 at 5.817 kb on - strand, within DDA3937_RS00025 at 5.817 kb on - strand, within DDA3937_RS00025 at 5.817 kb on - strand, within DDA3937_RS00025 at 5.817 kb on - strand, within DDA3937_RS00025 at 5.817 kb on - strand, within DDA3937_RS00025 at 5.865 kb on + strand, within DDA3937_RS00025 at 5.866 kb on - strand, within DDA3937_RS00025 at 5.866 kb on - strand, within DDA3937_RS00025 at 5.915 kb on + strand, within DDA3937_RS00025 at 5.915 kb on + strand, within DDA3937_RS00025 at 5.915 kb on + strand at 5.915 kb on + strand, within DDA3937_RS00025 at 5.929 kb on + strand, within DDA3937_RS00025 at 5.929 kb on + strand, within DDA3937_RS00025 at 5.930 kb on - strand, within DDA3937_RS00025 at 5.979 kb on + strand, within DDA3937_RS00025 at 5.979 kb on + strand, within DDA3937_RS00025 at 5.979 kb on + strand, within DDA3937_RS00025 at 5.979 kb on + strand, within DDA3937_RS00025 at 5.979 kb on + strand, within DDA3937_RS00025 at 5.979 kb on + strand, within DDA3937_RS00025 at 5.980 kb on - strand, within DDA3937_RS00025 at 5.980 kb on - strand, within DDA3937_RS00025 at 5.980 kb on - strand, within DDA3937_RS00025 at 5.980 kb on - strand, within DDA3937_RS00025 at 5.980 kb on - strand at 5.980 kb on - strand at 6.048 kb on + strand, within DDA3937_RS00025 at 6.049 kb on - strand, within DDA3937_RS00025 at 6.049 kb on - strand, within DDA3937_RS00025 at 6.069 kb on - strand, within DDA3937_RS00025 at 6.181 kb on - strand at 6.298 kb on - strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.328 kb on + strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.329 kb on - strand at 6.335 kb on + strand at 6.336 kb on - strand at 6.487 kb on + strand at 6.488 kb on - strand at 6.498 kb on + strand at 6.498 kb on + strand at 6.575 kb on + strand at 6.616 kb on + strand at 6.621 kb on + strand at 6.621 kb on + strand at 6.621 kb on + strand at 6.622 kb on - strand at 6.622 kb on - strand at 6.622 kb on - strand at 6.661 kb on - strand at 6.687 kb on + strand at 6.687 kb on + strand at 6.687 kb on + strand at 6.688 kb on - strand at 6.691 kb on + strand at 6.712 kb on + strand at 6.712 kb on + strand at 6.713 kb on - strand at 6.713 kb on - strand at 6.716 kb on + strand at 6.725 kb on + strand at 6.725 kb on + strand at 6.755 kb on + strand, within DDA3937_RS00030 at 6.755 kb on + strand, within DDA3937_RS00030 at 6.756 kb on - strand, within DDA3937_RS00030 at 6.756 kb on - strand, within DDA3937_RS00030 at 6.756 kb on - strand at 6.756 kb on - strand, within DDA3937_RS00030 at 6.756 kb on - strand, within DDA3937_RS00030 at 6.756 kb on - strand, within DDA3937_RS00030 at 6.756 kb on - strand, within DDA3937_RS00030 at 6.926 kb on + strand, within DDA3937_RS00030 at 6.926 kb on + strand, within DDA3937_RS00030 at 6.926 kb on + strand, within DDA3937_RS00030 at 6.927 kb on - strand, within DDA3937_RS00030 at 6.927 kb on - strand, within DDA3937_RS00030 at 6.958 kb on + strand, within DDA3937_RS00030 at 6.958 kb on + strand, within DDA3937_RS00030 at 6.959 kb on - strand, within DDA3937_RS00030 at 6.959 kb on - strand, within DDA3937_RS00030 at 6.959 kb on - strand, within DDA3937_RS00030 at 6.959 kb on - strand, within DDA3937_RS00030 at 6.986 kb on + strand, within DDA3937_RS00030 at 6.986 kb on + strand, within DDA3937_RS00030 at 6.987 kb on - strand, within DDA3937_RS00030 at 6.989 kb on + strand, within DDA3937_RS00030 at 6.989 kb on + strand, within DDA3937_RS00030 at 6.989 kb on + strand, within DDA3937_RS00030 at 6.989 kb on + strand, within DDA3937_RS00030 at 6.989 kb on + strand, within DDA3937_RS00030 at 6.990 kb on - strand, within DDA3937_RS00030 at 6.990 kb on - strand, within DDA3937_RS00030 at 7.002 kb on + strand, within DDA3937_RS00030 at 7.002 kb on + strand, within DDA3937_RS00030 at 7.002 kb on + strand, within DDA3937_RS00030 at 7.002 kb on + strand, within DDA3937_RS00030 at 7.002 kb on + strand, within DDA3937_RS00030 at 7.002 kb on + strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.003 kb on - strand, within DDA3937_RS00030 at 7.053 kb on - strand, within DDA3937_RS00030 at 7.119 kb on - strand at 7.133 kb on + strand at 7.133 kb on + strand at 7.204 kb on + strand at 7.205 kb on - strand at 7.269 kb on - strand at 7.269 kb on - strand at 7.269 kb on - strand at 7.269 kb on - strand at 7.269 kb on - strand at 7.272 kb on + strand at 7.273 kb on - strand at 7.273 kb on - strand at 7.273 kb on - strand at 7.282 kb on + strand, within DDA3937_RS00035 at 7.440 kb on + strand, within DDA3937_RS00035 at 7.440 kb on + strand, within DDA3937_RS00035 at 7.440 kb on + strand, within DDA3937_RS00035 at 7.441 kb on - strand, within DDA3937_RS00035 at 7.441 kb on - strand, within DDA3937_RS00035 at 7.477 kb on + strand, within DDA3937_RS00035 at 7.477 kb on + strand, within DDA3937_RS00035 at 7.477 kb on + strand, within DDA3937_RS00035 at 7.477 kb on + strand, within DDA3937_RS00035 at 7.478 kb on - strand at 7.520 kb on - strand, within DDA3937_RS00035 at 7.614 kb on + strand, within DDA3937_RS00035 at 7.614 kb on + strand, within DDA3937_RS00035 at 7.615 kb on - strand, within DDA3937_RS00035 at 7.675 kb on - strand, within DDA3937_RS00035 at 7.675 kb on - strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.708 kb on + strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.709 kb on - strand, within DDA3937_RS00035 at 7.710 kb on + strand, within DDA3937_RS00035 at 7.710 kb on + strand, within DDA3937_RS00035 at 7.710 kb on + strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.711 kb on - strand, within DDA3937_RS00035 at 7.842 kb on + strand, within DDA3937_RS00035 at 7.843 kb on - strand, within DDA3937_RS00035 at 8.017 kb on + strand, within DDA3937_RS00035 at 8.043 kb on + strand, within DDA3937_RS00035 at 8.043 kb on + strand, within DDA3937_RS00035 at 8.113 kb on + strand, within DDA3937_RS00035 at 8.113 kb on + strand, within DDA3937_RS00035 at 8.114 kb on - strand, within DDA3937_RS00035 at 8.114 kb on - strand, within DDA3937_RS00035 at 8.115 kb on + strand, within DDA3937_RS00035 at 8.115 kb on + strand, within DDA3937_RS00035 at 8.115 kb on + strand, within DDA3937_RS00035
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 5,732 + DDA3937_RS00025 0.70 +0.0 5,732 + DDA3937_RS00025 0.70 +0.1 5,733 - DDA3937_RS00025 0.70 +0.6 5,733 - DDA3937_RS00025 0.70 +0.5 5,733 - DDA3937_RS00025 0.70 -0.8 5,733 - DDA3937_RS00025 0.70 -2.6 5,816 + DDA3937_RS00025 0.74 +0.0 5,816 + DDA3937_RS00025 0.74 -0.3 5,816 + DDA3937_RS00025 0.74 +0.0 5,817 - DDA3937_RS00025 0.74 +0.6 5,817 - DDA3937_RS00025 0.74 +0.1 5,817 - DDA3937_RS00025 0.74 -0.4 5,817 - DDA3937_RS00025 0.74 -1.2 5,817 - DDA3937_RS00025 0.74 -1.6 5,865 + DDA3937_RS00025 0.77 -0.1 5,866 - DDA3937_RS00025 0.77 -1.1 5,866 - DDA3937_RS00025 0.77 +0.1 5,915 + DDA3937_RS00025 0.79 +1.3 5,915 + DDA3937_RS00025 0.79 +0.1 5,915 + -0.2 5,915 + DDA3937_RS00025 0.79 -1.0 5,929 + DDA3937_RS00025 0.80 +1.5 5,929 + DDA3937_RS00025 0.80 +0.8 5,930 - DDA3937_RS00025 0.80 +0.0 5,979 + DDA3937_RS00025 0.83 -1.0 5,979 + DDA3937_RS00025 0.83 +1.1 5,979 + DDA3937_RS00025 0.83 -0.9 5,979 + DDA3937_RS00025 0.83 -0.1 5,979 + DDA3937_RS00025 0.83 -0.1 5,979 + DDA3937_RS00025 0.83 -0.4 5,980 - DDA3937_RS00025 0.83 -2.7 5,980 - DDA3937_RS00025 0.83 -1.7 5,980 - DDA3937_RS00025 0.83 -1.2 5,980 - DDA3937_RS00025 0.83 -1.7 5,980 - +1.9 5,980 - -1.0 6,048 + DDA3937_RS00025 0.87 -0.4 6,049 - DDA3937_RS00025 0.87 -1.8 6,049 - DDA3937_RS00025 0.87 -1.7 6,069 - DDA3937_RS00025 0.88 -0.1 6,181 - -1.0 6,298 - -1.0 6,328 + +0.2 6,328 + -0.4 6,328 + -0.8 6,328 + +0.5 6,328 + +0.3 6,328 + -0.7 6,328 + -0.2 6,328 + +0.5 6,328 + +0.4 6,328 + -1.3 6,328 + +1.7 6,328 + -2.6 6,328 + +1.1 6,329 - +0.8 6,329 - +0.4 6,329 - -0.7 6,329 - -1.0 6,329 - -0.1 6,329 - +0.5 6,329 - -2.4 6,329 - +0.3 6,329 - +0.3 6,329 - +1.2 6,329 - -0.7 6,329 - -2.5 6,329 - -0.0 6,329 - -0.0 6,329 - -1.2 6,329 - +1.1 6,329 - +0.7 6,329 - -0.6 6,329 - -1.5 6,335 + -1.2 6,336 - -1.2 6,487 + -1.6 6,488 - -2.9 6,498 + -1.8 6,498 + -0.8 6,575 + +0.2 6,616 + +2.3 6,621 + +1.0 6,621 + +0.9 6,621 + -0.1 6,622 - -0.7 6,622 - -2.0 6,622 - -0.6 6,661 - +0.1 6,687 + +1.5 6,687 + +0.1 6,687 + +1.3 6,688 - +1.1 6,691 + +1.2 6,712 + +0.8 6,712 + +2.2 6,713 - -0.4 6,713 - -0.1 6,716 + -0.6 6,725 + +0.5 6,725 + +0.3 6,755 + DDA3937_RS00030 0.14 +0.6 6,755 + DDA3937_RS00030 0.14 +1.7 6,756 - DDA3937_RS00030 0.14 +0.3 6,756 - DDA3937_RS00030 0.14 -0.6 6,756 - -1.0 6,756 - DDA3937_RS00030 0.14 +0.6 6,756 - DDA3937_RS00030 0.14 -2.2 6,756 - DDA3937_RS00030 0.14 -1.5 6,756 - DDA3937_RS00030 0.14 -0.6 6,926 + DDA3937_RS00030 0.55 -1.1 6,926 + DDA3937_RS00030 0.55 +0.8 6,926 + DDA3937_RS00030 0.55 +0.2 6,927 - DDA3937_RS00030 0.55 +0.8 6,927 - DDA3937_RS00030 0.55 -0.7 6,958 + DDA3937_RS00030 0.62 +0.1 6,958 + DDA3937_RS00030 0.62 +0.5 6,959 - DDA3937_RS00030 0.63 -0.5 6,959 - DDA3937_RS00030 0.63 -1.2 6,959 - DDA3937_RS00030 0.63 -0.8 6,959 - DDA3937_RS00030 0.63 +0.1 6,986 + DDA3937_RS00030 0.69 +1.5 6,986 + DDA3937_RS00030 0.69 +0.1 6,987 - DDA3937_RS00030 0.69 -1.7 6,989 + DDA3937_RS00030 0.70 -0.2 6,989 + DDA3937_RS00030 0.70 +0.7 6,989 + DDA3937_RS00030 0.70 +0.2 6,989 + DDA3937_RS00030 0.70 -1.3 6,989 + DDA3937_RS00030 0.70 -0.7 6,990 - DDA3937_RS00030 0.70 +0.1 6,990 - DDA3937_RS00030 0.70 -3.0 7,002 + DDA3937_RS00030 0.73 -0.2 7,002 + DDA3937_RS00030 0.73 +3.4 7,002 + DDA3937_RS00030 0.73 +0.4 7,002 + DDA3937_RS00030 0.73 -0.7 7,002 + DDA3937_RS00030 0.73 -1.7 7,002 + DDA3937_RS00030 0.73 -0.5 7,003 - DDA3937_RS00030 0.73 -1.0 7,003 - DDA3937_RS00030 0.73 +0.8 7,003 - DDA3937_RS00030 0.73 -0.7 7,003 - DDA3937_RS00030 0.73 -0.1 7,003 - DDA3937_RS00030 0.73 -1.0 7,003 - DDA3937_RS00030 0.73 +0.4 7,003 - DDA3937_RS00030 0.73 +2.2 7,053 - DDA3937_RS00030 0.85 -0.2 7,119 - +0.2 7,133 + -0.5 7,133 + +0.9 7,204 + +0.1 7,205 - -1.0 7,269 - -1.4 7,269 - -1.1 7,269 - +0.8 7,269 - +0.5 7,269 - +2.7 7,272 + +0.3 7,273 - +2.2 7,273 - +0.0 7,273 - -2.0 7,282 + DDA3937_RS00035 0.11 +1.3 7,440 + DDA3937_RS00035 0.21 -1.5 7,440 + DDA3937_RS00035 0.21 -0.4 7,440 + DDA3937_RS00035 0.21 -1.3 7,441 - DDA3937_RS00035 0.21 -0.3 7,441 - DDA3937_RS00035 0.21 +0.3 7,477 + DDA3937_RS00035 0.24 +2.3 7,477 + DDA3937_RS00035 0.24 +1.0 7,477 + DDA3937_RS00035 0.24 -0.7 7,477 + DDA3937_RS00035 0.24 -0.7 7,478 - +2.3 7,520 - DDA3937_RS00035 0.26 -1.3 7,614 + DDA3937_RS00035 0.33 -0.6 7,614 + DDA3937_RS00035 0.33 -0.9 7,615 - DDA3937_RS00035 0.33 -0.3 7,675 - DDA3937_RS00035 0.37 -0.1 7,675 - DDA3937_RS00035 0.37 +1.0 7,708 + DDA3937_RS00035 0.39 -0.2 7,708 + DDA3937_RS00035 0.39 -1.1 7,708 + DDA3937_RS00035 0.39 -1.5 7,708 + DDA3937_RS00035 0.39 +0.2 7,708 + DDA3937_RS00035 0.39 -2.6 7,708 + DDA3937_RS00035 0.39 -1.1 7,708 + DDA3937_RS00035 0.39 -0.1 7,709 - DDA3937_RS00035 0.39 -3.0 7,709 - DDA3937_RS00035 0.39 +0.2 7,709 - DDA3937_RS00035 0.39 -0.6 7,709 - DDA3937_RS00035 0.39 -1.4 7,709 - DDA3937_RS00035 0.39 +0.0 7,709 - DDA3937_RS00035 0.39 +1.3 7,709 - DDA3937_RS00035 0.39 -1.7 7,709 - DDA3937_RS00035 0.39 -2.9 7,709 - DDA3937_RS00035 0.39 -0.4 7,709 - DDA3937_RS00035 0.39 +3.1 7,710 + DDA3937_RS00035 0.39 -1.2 7,710 + DDA3937_RS00035 0.39 -0.6 7,710 + DDA3937_RS00035 0.39 -0.2 7,711 - DDA3937_RS00035 0.39 +0.0 7,711 - DDA3937_RS00035 0.39 +0.9 7,711 - DDA3937_RS00035 0.39 +2.2 7,711 - DDA3937_RS00035 0.39 -0.0 7,711 - DDA3937_RS00035 0.39 +0.1 7,711 - DDA3937_RS00035 0.39 +0.1 7,711 - DDA3937_RS00035 0.39 +0.6 7,842 + DDA3937_RS00035 0.48 -0.2 7,843 - DDA3937_RS00035 0.48 +0.3 8,017 + DDA3937_RS00035 0.59 -1.1 8,043 + DDA3937_RS00035 0.61 -0.1 8,043 + DDA3937_RS00035 0.61 -0.8 8,113 + DDA3937_RS00035 0.66 +0.0 8,113 + DDA3937_RS00035 0.66 -1.1 8,114 - DDA3937_RS00035 0.66 -0.2 8,114 - DDA3937_RS00035 0.66 -2.7 8,115 + DDA3937_RS00035 0.66 -2.0 8,115 + DDA3937_RS00035 0.66 -0.8 8,115 + DDA3937_RS00035 0.66 -2.2
Or see this region's nucleotide sequence